Gcaud2316.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2316.t1
Unique NameGcaud2316.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_845_length_17097_cov_4.330472contigNODE_845_length_17097_cov_4.330472:11538..12200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog379066.GAU_1903
PFAMsCMD
Max annot lvl142182|Gemmatimonadetes
KEGG rclassRC00938
KEGG koko:K01607
KEGG ReactionR03470
KEGG Pathwayko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220
Evalue4.13e-13
EggNOG OGsCOG0599@1|root,COG0599@2|Bacteria,1ZTPF@142182|Gemmatimonadetes
EC4.1.1.44
DescriptionCarboxymuconolactone decarboxylase family
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2316Gcaud2316Gracilaria caudata M_176_S67 malegeneNODE_845_length_17097_cov_4.330472 11538..12200 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2316.t1.stop1Gcaud2316.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_845_length_17097_cov_4.330472 11538..11540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2316.t1.CDS1Gcaud2316.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_845_length_17097_cov_4.330472 11538..12200 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2316.t1.exon1Gcaud2316.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_845_length_17097_cov_4.330472 11538..12200 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2316.t1.start1Gcaud2316.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_845_length_17097_cov_4.330472 12198..12200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2316.t1Gcaud2316.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_845_length_17097_cov_4.330472 11538..12200 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2316.t1 ID=Gcaud2316.t1|Name=Gcaud2316.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=221bp
MTNLYPLLAKLPKAPPTICTQFRTILLAVGHVARGDVHGVTSAFRFIDQQ
HHKKAYELSVVQAMPFIGIPRALHAAAALQILGVVGDPEQSTLASIADLE
QKGEHTFNQIYGRNAYRVRKRLKQFHPFVEQWVMTCNYGAMLSRDDATLR
ERELAAVAALSIDRYASVQLASHIRGAFKVGASYDEIRMTVEHARVLADD
DDWRSAEAVLQTWDRARYAL*
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spliced messenger RNA

>Gcaud2316.t1 ID=Gcaud2316.t1|Name=Gcaud2316.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=663bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:11538..12200- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAACCTCTACCCTCTGCTCGCCAAACTGCCGAAAGCACCGCCGAC
CATCTGTACGCAGTTTCGAACAATTCTGTTAGCTGTAGGCCATGTGGCGA
GGGGAGACGTACACGGTGTGACAAGCGCCTTTCGCTTTATTGATCAACAA
CATCACAAAAAGGCATACGAGCTCTCTGTAGTACAAGCGATGCCGTTTAT
CGGAATTCCTCGCGCACTTCATGCAGCCGCAGCACTACAGATTTTGGGAG
TGGTTGGTGATCCAGAGCAGTCCACACTGGCCTCCATAGCAGACCTTGAA
CAAAAGGGTGAGCATACGTTCAATCAGATTTATGGGCGCAATGCATACCG
CGTGAGAAAGCGATTGAAACAGTTTCATCCTTTTGTGGAACAGTGGGTGA
TGACTTGTAATTACGGTGCAATGCTTTCCCGAGACGACGCGACTCTTCGA
GAGCGCGAGTTGGCGGCAGTGGCAGCGTTGTCCATCGATAGATATGCCTC
AGTGCAACTGGCGAGTCACATTCGCGGTGCGTTCAAAGTTGGAGCCAGCT
ATGATGAGATAAGGATGACGGTGGAGCATGCACGCGTTCTAGCAGACGAC
GACGACTGGAGGAGCGCGGAGGCGGTGTTGCAGACTTGGGATCGCGCTAG
ATATGCTCTCTAA
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protein sequence of Gcaud2316.t1

>Gcaud2316.t1 ID=Gcaud2316.t1|Name=Gcaud2316.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=221bp
MTNLYPLLAKLPKAPPTICTQFRTILLAVGHVARGDVHGVTSAFRFIDQQ
HHKKAYELSVVQAMPFIGIPRALHAAAALQILGVVGDPEQSTLASIADLE
QKGEHTFNQIYGRNAYRVRKRLKQFHPFVEQWVMTCNYGAMLSRDDATLR
ERELAAVAALSIDRYASVQLASHIRGAFKVGASYDEIRMTVEHARVLADD
DDWRSAEAVLQTWDRARYAL*
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mRNA from alignment at NODE_845_length_17097_cov_4.330472:11538..12200-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2316.t1 ID=Gcaud2316.t1|Name=Gcaud2316.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=663bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:11538..12200- (Gracilaria caudata M_176_S67 male)
ATGACGAACCTCTACCCTCTGCTCGCCAAACTGCCGAAAGCACCGCCGAC
CATCTGTACGCAGTTTCGAACAATTCTGTTAGCTGTAGGCCATGTGGCGA
GGGGAGACGTACACGGTGTGACAAGCGCCTTTCGCTTTATTGATCAACAA
CATCACAAAAAGGCATACGAGCTCTCTGTAGTACAAGCGATGCCGTTTAT
CGGAATTCCTCGCGCACTTCATGCAGCCGCAGCACTACAGATTTTGGGAG
TGGTTGGTGATCCAGAGCAGTCCACACTGGCCTCCATAGCAGACCTTGAA
CAAAAGGGTGAGCATACGTTCAATCAGATTTATGGGCGCAATGCATACCG
CGTGAGAAAGCGATTGAAACAGTTTCATCCTTTTGTGGAACAGTGGGTGA
TGACTTGTAATTACGGTGCAATGCTTTCCCGAGACGACGCGACTCTTCGA
GAGCGCGAGTTGGCGGCAGTGGCAGCGTTGTCCATCGATAGATATGCCTC
AGTGCAACTGGCGAGTCACATTCGCGGTGCGTTCAAAGTTGGAGCCAGCT
ATGATGAGATAAGGATGACGGTGGAGCATGCACGCGTTCTAGCAGACGAC
GACGACTGGAGGAGCGCGGAGGCGGTGTTGCAGACTTGGGATCGCGCTAG
ATATGCTCTCTAA
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Coding sequence (CDS) from alignment at NODE_845_length_17097_cov_4.330472:11538..12200-

>Gcaud2316.t1 ID=Gcaud2316.t1|Name=Gcaud2316.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=663bp|location=Sequence derived from alignment at NODE_845_length_17097_cov_4.330472:11538..12200- (Gracilaria caudata M_176_S67 male)
ATGACGAACCTCTACCCTCTGCTCGCCAAACTGCCGAAAGCACCGCCGAC
CATCTGTACGCAGTTTCGAACAATTCTGTTAGCTGTAGGCCATGTGGCGA
GGGGAGACGTACACGGTGTGACAAGCGCCTTTCGCTTTATTGATCAACAA
CATCACAAAAAGGCATACGAGCTCTCTGTAGTACAAGCGATGCCGTTTAT
CGGAATTCCTCGCGCACTTCATGCAGCCGCAGCACTACAGATTTTGGGAG
TGGTTGGTGATCCAGAGCAGTCCACACTGGCCTCCATAGCAGACCTTGAA
CAAAAGGGTGAGCATACGTTCAATCAGATTTATGGGCGCAATGCATACCG
CGTGAGAAAGCGATTGAAACAGTTTCATCCTTTTGTGGAACAGTGGGTGA
TGACTTGTAATTACGGTGCAATGCTTTCCCGAGACGACGCGACTCTTCGA
GAGCGCGAGTTGGCGGCAGTGGCAGCGTTGTCCATCGATAGATATGCCTC
AGTGCAACTGGCGAGTCACATTCGCGGTGCGTTCAAAGTTGGAGCCAGCT
ATGATGAGATAAGGATGACGGTGGAGCATGCACGCGTTCTAGCAGACGAC
GACGACTGGAGGAGCGCGGAGGCGGTGTTGCAGACTTGGGATCGCGCTAG
ATATGCTCTCTAA
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