Gcaud2308.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2308.t1
Unique NameGcaud2308.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:11351..12610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707823.1
Preferred nameGTF2H2
PFAMsC1_4,Ssl1
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K01177,ko:K03142,ko:K14766
KEGG ReactionR02112,R03469,R11262
KEGG Pathwayko00500,ko00562,ko01100,ko03022,ko03420,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05203,ko05231,map00500,map00562,map01100,map03022,map03420,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05203,map05231
KEGG ModuleM00130,M00290
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000438,GO:0000439,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0002029,GO:0002031,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006412,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016310,GO:0016567,GO:0016591,GO:0016604,GO:0016607,GO:0016740,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0022401,GO:0022607,GO:0023051,GO:0023057,GO:0023058,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031623,GO:0031974,GO:0031981,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0043043,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045744,GO:0046483,GO:0047485,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061630,GO:0061659,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070816,GO:0070911,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0098657,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
Evalue6.53e-109
EggNOG OGsCOG5151@1|root,KOG2807@2759|Eukaryota
EC2.7.1.68,3.2.1.2
Descriptionnucleotide-excision repair
COG categoryKL
CAZyGH14
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03021,ko03400,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2308Gcaud2308Gracilaria caudata M_176_S67 malegeneNODE_838_length_17196_cov_5.011166 11351..12610 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2308.t1.stop1Gcaud2308.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_838_length_17196_cov_5.011166 11351..11353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2308.t1.CDS1Gcaud2308.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_838_length_17196_cov_5.011166 11351..12610 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2308.t1.exon1Gcaud2308.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_838_length_17196_cov_5.011166 11351..12610 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2308.t1.start1Gcaud2308.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_838_length_17196_cov_5.011166 12608..12610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2308.t1Gcaud2308.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_838_length_17196_cov_5.011166 11351..12610 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2308.t1 ID=Gcaud2308.t1|Name=Gcaud2308.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=420bp
MLVDVDKDDEDIKRIREGYAWESSKIRSWEQIEEDPETGRLKSYQIDHQR
AKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQS
FIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPG
GNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLV
SEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPP
TVNRQVSASLIRMGFPMLERLEQPTLYCNNPNLKGRFGYHCPRCSAWISE
IPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPND
AHSERVTELLNNDSVRCTGCKTMLRKEKALRLLCPKCLNVFCIDCDSFIH
DSLHHCPGCGNQTIRNQSK*
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spliced messenger RNA

>Gcaud2308.t1 ID=Gcaud2308.t1|Name=Gcaud2308.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:11351..12610- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTGGATGTCGACAAAGATGACGAGGACATCAAACGCATTCGCGA
AGGATATGCCTGGGAATCCAGCAAGATTCGTTCATGGGAGCAAATCGAAG
AAGACCCGGAAACAGGCCGTCTCAAGTCTTACCAAATTGACCACCAAAGA
GCCAAGAAAAAGATCAGAGATGACGGACCCAGCGGTGTGCGGAGAGGGAT
TATCCGCTTTTGTGTCATCATCGTTGATATGTCGCAGTCATTGCGTTCAA
CTGATCTTAAGCCATCGAGAGCAGATCTTGTCATCGACTCTGTCCAGTCG
TTTATCAAGGAATTTTTCGATCAGAATCCCATTTCGCAGCTGAGTGTGAT
CATGACCAGAGATGGGAAGGCTCTCAGACTCTCAACTTTCTCTTCTAATG
AAAAGCATCATATCGAAGCGGTACAGAAGGCTTCCAGAATGGGGCCCGGT
GGAAACGCTTCCCTTCAAAACTCTCTCACTGTGGCAAAGAACAATCTGGC
GTCTGTACCACCATATGGCATGAAAGAGATCATCATCGCGTACGGCTCTC
TTTCGACGTGCGATCCCGGTGACATTCATCAAACGATTGAATCTCTAGTT
TCTGAGAAGATTCGTTGCTCTGCAATTGGGCTCGGGGCTGAGCTCTACAT
ATTACGGTGTCTCACGAAGAAGGCCGGTGGTACTTACGTTATAGCTCGTA
ACGAAGAACACTTCCGAGATTCATGGACTGGTCATGTCATTCCGCCACCT
ACTGTGAACAGACAAGTTAGCGCATCATTGATTCGAATGGGTTTCCCAAT
GCTTGAACGTCTTGAACAACCAACCCTTTACTGCAATAATCCAAACTTAA
AGGGACGCTTCGGATATCACTGTCCGCGTTGCTCAGCATGGATAAGCGAA
ATACCTTCTGAATGTGCTCTATGTGGCCTGACTTTGGTTTCAAGTCCACA
TCTGGCAAGGTCGTACCACCATTTGTTCCCTGTACCGAGGTTTGTTACTG
TGGATGAGCGGGAACCGGACACTCTACAGTCAAACGGAGCTCCGAACGAT
GCTCACAGTGAGCGTGTCACCGAATTGTTAAACAACGACTCTGTTCGGTG
CACCGGATGCAAAACTATGTTGCGTAAAGAAAAGGCTCTGCGACTGCTTT
GCCCCAAGTGTCTCAATGTTTTCTGTATTGATTGTGATTCGTTCATACAC
GATTCATTACATCATTGTCCAGGCTGTGGAAATCAAACTATACGCAACCA
GTCAAAATGA
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protein sequence of Gcaud2308.t1

>Gcaud2308.t1 ID=Gcaud2308.t1|Name=Gcaud2308.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=420bp
MLVDVDKDDEDIKRIREGYAWESSKIRSWEQIEEDPETGRLKSYQIDHQR
AKKKIRDDGPSGVRRGIIRFCVIIVDMSQSLRSTDLKPSRADLVIDSVQS
FIKEFFDQNPISQLSVIMTRDGKALRLSTFSSNEKHHIEAVQKASRMGPG
GNASLQNSLTVAKNNLASVPPYGMKEIIIAYGSLSTCDPGDIHQTIESLV
SEKIRCSAIGLGAELYILRCLTKKAGGTYVIARNEEHFRDSWTGHVIPPP
TVNRQVSASLIRMGFPMLERLEQPTLYCNNPNLKGRFGYHCPRCSAWISE
IPSECALCGLTLVSSPHLARSYHHLFPVPRFVTVDEREPDTLQSNGAPND
AHSERVTELLNNDSVRCTGCKTMLRKEKALRLLCPKCLNVFCIDCDSFIH
DSLHHCPGCGNQTIRNQSK*
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mRNA from alignment at NODE_838_length_17196_cov_5.011166:11351..12610-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2308.t1 ID=Gcaud2308.t1|Name=Gcaud2308.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:11351..12610- (Gracilaria caudata M_176_S67 male)
ATGCTCGTGGATGTCGACAAAGATGACGAGGACATCAAACGCATTCGCGA
AGGATATGCCTGGGAATCCAGCAAGATTCGTTCATGGGAGCAAATCGAAG
AAGACCCGGAAACAGGCCGTCTCAAGTCTTACCAAATTGACCACCAAAGA
GCCAAGAAAAAGATCAGAGATGACGGACCCAGCGGTGTGCGGAGAGGGAT
TATCCGCTTTTGTGTCATCATCGTTGATATGTCGCAGTCATTGCGTTCAA
CTGATCTTAAGCCATCGAGAGCAGATCTTGTCATCGACTCTGTCCAGTCG
TTTATCAAGGAATTTTTCGATCAGAATCCCATTTCGCAGCTGAGTGTGAT
CATGACCAGAGATGGGAAGGCTCTCAGACTCTCAACTTTCTCTTCTAATG
AAAAGCATCATATCGAAGCGGTACAGAAGGCTTCCAGAATGGGGCCCGGT
GGAAACGCTTCCCTTCAAAACTCTCTCACTGTGGCAAAGAACAATCTGGC
GTCTGTACCACCATATGGCATGAAAGAGATCATCATCGCGTACGGCTCTC
TTTCGACGTGCGATCCCGGTGACATTCATCAAACGATTGAATCTCTAGTT
TCTGAGAAGATTCGTTGCTCTGCAATTGGGCTCGGGGCTGAGCTCTACAT
ATTACGGTGTCTCACGAAGAAGGCCGGTGGTACTTACGTTATAGCTCGTA
ACGAAGAACACTTCCGAGATTCATGGACTGGTCATGTCATTCCGCCACCT
ACTGTGAACAGACAAGTTAGCGCATCATTGATTCGAATGGGTTTCCCAAT
GCTTGAACGTCTTGAACAACCAACCCTTTACTGCAATAATCCAAACTTAA
AGGGACGCTTCGGATATCACTGTCCGCGTTGCTCAGCATGGATAAGCGAA
ATACCTTCTGAATGTGCTCTATGTGGCCTGACTTTGGTTTCAAGTCCACA
TCTGGCAAGGTCGTACCACCATTTGTTCCCTGTACCGAGGTTTGTTACTG
TGGATGAGCGGGAACCGGACACTCTACAGTCAAACGGAGCTCCGAACGAT
GCTCACAGTGAGCGTGTCACCGAATTGTTAAACAACGACTCTGTTCGGTG
CACCGGATGCAAAACTATGTTGCGTAAAGAAAAGGCTCTGCGACTGCTTT
GCCCCAAGTGTCTCAATGTTTTCTGTATTGATTGTGATTCGTTCATACAC
GATTCATTACATCATTGTCCAGGCTGTGGAAATCAAACTATACGCAACCA
GTCAAAATGA
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Coding sequence (CDS) from alignment at NODE_838_length_17196_cov_5.011166:11351..12610-

>Gcaud2308.t1 ID=Gcaud2308.t1|Name=Gcaud2308.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1260bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:11351..12610- (Gracilaria caudata M_176_S67 male)
ATGCTCGTGGATGTCGACAAAGATGACGAGGACATCAAACGCATTCGCGA
AGGATATGCCTGGGAATCCAGCAAGATTCGTTCATGGGAGCAAATCGAAG
AAGACCCGGAAACAGGCCGTCTCAAGTCTTACCAAATTGACCACCAAAGA
GCCAAGAAAAAGATCAGAGATGACGGACCCAGCGGTGTGCGGAGAGGGAT
TATCCGCTTTTGTGTCATCATCGTTGATATGTCGCAGTCATTGCGTTCAA
CTGATCTTAAGCCATCGAGAGCAGATCTTGTCATCGACTCTGTCCAGTCG
TTTATCAAGGAATTTTTCGATCAGAATCCCATTTCGCAGCTGAGTGTGAT
CATGACCAGAGATGGGAAGGCTCTCAGACTCTCAACTTTCTCTTCTAATG
AAAAGCATCATATCGAAGCGGTACAGAAGGCTTCCAGAATGGGGCCCGGT
GGAAACGCTTCCCTTCAAAACTCTCTCACTGTGGCAAAGAACAATCTGGC
GTCTGTACCACCATATGGCATGAAAGAGATCATCATCGCGTACGGCTCTC
TTTCGACGTGCGATCCCGGTGACATTCATCAAACGATTGAATCTCTAGTT
TCTGAGAAGATTCGTTGCTCTGCAATTGGGCTCGGGGCTGAGCTCTACAT
ATTACGGTGTCTCACGAAGAAGGCCGGTGGTACTTACGTTATAGCTCGTA
ACGAAGAACACTTCCGAGATTCATGGACTGGTCATGTCATTCCGCCACCT
ACTGTGAACAGACAAGTTAGCGCATCATTGATTCGAATGGGTTTCCCAAT
GCTTGAACGTCTTGAACAACCAACCCTTTACTGCAATAATCCAAACTTAA
AGGGACGCTTCGGATATCACTGTCCGCGTTGCTCAGCATGGATAAGCGAA
ATACCTTCTGAATGTGCTCTATGTGGCCTGACTTTGGTTTCAAGTCCACA
TCTGGCAAGGTCGTACCACCATTTGTTCCCTGTACCGAGGTTTGTTACTG
TGGATGAGCGGGAACCGGACACTCTACAGTCAAACGGAGCTCCGAACGAT
GCTCACAGTGAGCGTGTCACCGAATTGTTAAACAACGACTCTGTTCGGTG
CACCGGATGCAAAACTATGTTGCGTAAAGAAAAGGCTCTGCGACTGCTTT
GCCCCAAGTGTCTCAATGTTTTCTGTATTGATTGTGATTCGTTCATACAC
GATTCATTACATCATTGTCCAGGCTGTGGAAATCAAACTATACGCAACCA
GTCAAAATGA
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