Gcaud2304.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2304.t1
Unique NameGcaud2304.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length131
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:3596..3988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704598.1
Preferred nameSPY
PFAMsGlyco_transf_41,TPR_1,TPR_10,TPR_16,TPR_8
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0008150,GO:0008194,GO:0008375,GO:0009719,GO:0009725,GO:0009735,GO:0009736,GO:0009739,GO:0009740,GO:0009755,GO:0009937,GO:0009938,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010476,GO:0010646,GO:0010648,GO:0016262,GO:0016740,GO:0016757,GO:0016758,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0031323,GO:0032870,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071229,GO:0071310,GO:0071368,GO:0071370,GO:0071396,GO:0071495,GO:0140096,GO:1901700,GO:1901701,GO:2000377
Evalue1.68e-16
EggNOG OGsCOG3914@1|root,KOG4626@2759|Eukaryota
Descriptionprotein N-acetylglucosaminyltransferase activity
COG categoryO
BRITEko00000,ko00001,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2304Gcaud2304Gracilaria caudata M_176_S67 malegeneNODE_838_length_17196_cov_5.011166 3596..3988 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2304.t1.start1Gcaud2304.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_838_length_17196_cov_5.011166 3596..3598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2304.t1.CDS1Gcaud2304.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_838_length_17196_cov_5.011166 3596..3988 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2304.t1.exon1Gcaud2304.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_838_length_17196_cov_5.011166 3596..3988 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2304.t1.stop1Gcaud2304.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_838_length_17196_cov_5.011166 3986..3988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2304.t1Gcaud2304.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_838_length_17196_cov_5.011166 3596..3988 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2304.t1 ID=Gcaud2304.t1|Name=Gcaud2304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=131bp
MQKALECYKRALERDRQHHQTHNEIAVVYTLLGDIDSASEHLCTANAICP
HYAEAYKNIGVLLRDQGDIDLAIKHYERCYEIDPRADMAAQNRLHALNYS
EEWSKAQVYEQHLAWGTAFQKRIDDESASC*
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spliced messenger RNA

>Gcaud2304.t1 ID=Gcaud2304.t1|Name=Gcaud2304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=393bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:3596..3988+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAAGGCGCTGGAATGCTACAAACGTGCTTTGGAACGCGATCGCCA
GCATCATCAAACTCACAATGAAATTGCCGTCGTCTACACTCTATTGGGAG
ACATAGATTCTGCAAGCGAGCATTTGTGCACTGCCAATGCCATATGTCCG
CACTATGCAGAAGCGTACAAAAACATCGGCGTTCTCTTAAGAGATCAAGG
TGATATTGATCTCGCAATCAAACACTACGAGCGATGTTACGAGATCGATC
CACGTGCCGATATGGCTGCCCAAAACCGTTTGCATGCCCTCAACTACAGC
GAAGAATGGAGCAAAGCACAGGTTTACGAGCAACATTTGGCGTGGGGAAC
TGCCTTTCAAAAACGTATTGATGACGAAAGTGCAAGCTGCTAA
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protein sequence of Gcaud2304.t1

>Gcaud2304.t1 ID=Gcaud2304.t1|Name=Gcaud2304.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=131bp
MQKALECYKRALERDRQHHQTHNEIAVVYTLLGDIDSASEHLCTANAICP
HYAEAYKNIGVLLRDQGDIDLAIKHYERCYEIDPRADMAAQNRLHALNYS
EEWSKAQVYEQHLAWGTAFQKRIDDESASC*
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mRNA from alignment at NODE_838_length_17196_cov_5.011166:3596..3988+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2304.t1 ID=Gcaud2304.t1|Name=Gcaud2304.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=393bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:3596..3988+ (Gracilaria caudata M_176_S67 male)
ATGCAAAAGGCGCTGGAATGCTACAAACGTGCTTTGGAACGCGATCGCCA
GCATCATCAAACTCACAATGAAATTGCCGTCGTCTACACTCTATTGGGAG
ACATAGATTCTGCAAGCGAGCATTTGTGCACTGCCAATGCCATATGTCCG
CACTATGCAGAAGCGTACAAAAACATCGGCGTTCTCTTAAGAGATCAAGG
TGATATTGATCTCGCAATCAAACACTACGAGCGATGTTACGAGATCGATC
CACGTGCCGATATGGCTGCCCAAAACCGTTTGCATGCCCTCAACTACAGC
GAAGAATGGAGCAAAGCACAGGTTTACGAGCAACATTTGGCGTGGGGAAC
TGCCTTTCAAAAACGTATTGATGACGAAAGTGCAAGCTGCTAA
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Coding sequence (CDS) from alignment at NODE_838_length_17196_cov_5.011166:3596..3988+

>Gcaud2304.t1 ID=Gcaud2304.t1|Name=Gcaud2304.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=393bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:3596..3988+ (Gracilaria caudata M_176_S67 male)
ATGCAAAAGGCGCTGGAATGCTACAAACGTGCTTTGGAACGCGATCGCCA
GCATCATCAAACTCACAATGAAATTGCCGTCGTCTACACTCTATTGGGAG
ACATAGATTCTGCAAGCGAGCATTTGTGCACTGCCAATGCCATATGTCCG
CACTATGCAGAAGCGTACAAAAACATCGGCGTTCTCTTAAGAGATCAAGG
TGATATTGATCTCGCAATCAAACACTACGAGCGATGTTACGAGATCGATC
CACGTGCCGATATGGCTGCCCAAAACCGTTTGCATGCCCTCAACTACAGC
GAAGAATGGAGCAAAGCACAGGTTTACGAGCAACATTTGGCGTGGGGAAC
TGCCTTTCAAAAACGTATTGATGACGAAAGTGCAAGCTGCTAA
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