Gcaud2275.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2275.t1
Unique Name	Gcaud2275.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	381

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2244_length_6318_cov_4.442749	contig	NODE_2244_length_6318_cov_4.442749:398..1540 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42345.XP_008783759.1
PFAMs	ADK,PPR,PPR_2
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00002
KEGG ko	ko:K13800
KEGG Reaction	R00158,R00512,R01665,R11891,R11892
KEGG Pathway	ko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG Module	M00052
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Evalue	2.29e-09
EggNOG OGs	KOG4197@1\|root,KOG4197@2759\|Eukaryota,37JQ9@33090\|Viridiplantae,3GE4M@35493\|Streptophyta,3KYDN@4447\|Liliopsida
EC	2.7.4.14
Description	Pentatricopeptide repeat domain
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2275	Gcaud2275	Gracilaria caudata M_176_S67 male	gene	NODE_2244_length_6318_cov_4.442749 398..1540 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2275.t1.start1	Gcaud2275.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2244_length_6318_cov_4.442749 398..400 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2275.t1.CDS1	Gcaud2275.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2244_length_6318_cov_4.442749 398..1540 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2275.t1.exon1	Gcaud2275.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2244_length_6318_cov_4.442749 398..1540 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2275.t1.stop1	Gcaud2275.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2244_length_6318_cov_4.442749 1538..1540 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2275.t1	Gcaud2275.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2244_length_6318_cov_4.442749 398..1540 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2244_length_6318_cov_4.442749:398..1540+
coding sequence from alignment at NODE_2244_length_6318_cov_4.442749:398..1540+

mRNA sequence

>Gcaud2275.t1 ID=Gcaud2275.t1|Name=Gcaud2275.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp
MLVRQKHNFNRCLWLYQQLNNHGIKPDKYTFSLLLTACAGVRDTQHAMQL
FHELRHYRVPLDNYLRANLLTVVARSKQPDMAFAMWVFASSPKPTTLLCN
IVIDLFARTHNISGAESVQRYMNAAQIGADAYTVSALIRAHVATAGAHAA
LRALRDMWRAGLSVHASAFGQVIVAFGQQGLVDEAVALFDEMTVFGVAPQ
QSTFNALISACIGRDVHKAFEIFEEMNASTSFHGDRYTFHALIKCCLAAR
QPHRVAALYDAIARRGFQRNQVSYRYALVAAGMMMDVELVERVARDMRAN
ACEARLDTAATLVAAAIRCSDLQAALSHFSRFVSGGDAARNARFFEEIRA
ALRAFDARGVLDSRHTQRVVDELERSCMRE*

spliced messenger RNA

>Gcaud2275.t1 ID=Gcaud2275.t1|Name=Gcaud2275.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_2244_length_6318_cov_4.442749:398..1540+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTTCGTCAGAAGCACAACTTCAACCGCTGTTTGTGGCTGTACCA
ACAGCTCAACAACCACGGCATCAAGCCGGACAAGTACACGTTCAGCTTGC
TGCTCACCGCGTGCGCCGGCGTGAGAGACACGCAACATGCCATGCAGCTG
TTCCACGAGCTGCGTCACTACCGTGTGCCACTGGACAATTATCTTCGAGC
CAACCTGCTCACGGTGGTGGCACGCTCCAAACAGCCGGACATGGCGTTTG
CCATGTGGGTGTTCGCGTCCTCTCCAAAGCCCACAACGCTGCTGTGTAAC
ATTGTGATCGACCTCTTCGCGCGCACGCACAACATCAGCGGCGCCGAATC
GGTGCAGCGCTACATGAACGCGGCGCAAATCGGCGCCGATGCATACACGG
TGTCGGCGCTGATCCGCGCGCATGTGGCCACAGCCGGCGCGCACGCGGCG
CTGCGCGCGCTGCGTGACATGTGGCGCGCGGGGCTCAGCGTGCATGCGTC
GGCGTTTGGTCAGGTGATTGTGGCGTTTGGACAGCAGGGGCTGGTGGATG
AGGCGGTGGCTCTTTTCGATGAGATGACCGTGTTCGGCGTGGCGCCGCAA
CAAAGCACGTTCAACGCGTTGATCTCGGCGTGCATCGGACGTGACGTGCA
CAAGGCGTTTGAAATCTTCGAGGAAATGAACGCAAGCACGTCGTTCCACG
GCGACCGATACACGTTCCACGCGCTCATCAAGTGCTGTCTGGCCGCGCGC
CAACCGCACCGCGTCGCAGCGCTGTACGACGCAATCGCACGGCGCGGCTT
TCAGCGCAACCAGGTGAGTTACCGGTACGCGCTGGTGGCGGCGGGCATGA
TGATGGACGTGGAGCTTGTGGAGCGCGTGGCGCGCGACATGCGCGCCAAC
GCGTGCGAGGCGCGGCTGGACACGGCGGCCACGCTGGTGGCGGCGGCGAT
CCGATGCTCGGACCTGCAGGCGGCGCTGAGCCACTTCTCGCGCTTTGTGA
GCGGCGGCGATGCGGCGCGCAACGCGCGCTTCTTTGAGGAGATTCGCGCG
GCGCTGCGCGCGTTTGACGCGCGCGGGGTGCTGGACTCGAGACACACGCA
GCGCGTGGTGGACGAGTTGGAGCGCAGCTGCATGCGCGAGTGA

protein sequence of Gcaud2275.t1

>Gcaud2275.t1 ID=Gcaud2275.t1|Name=Gcaud2275.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=381bp
MLVRQKHNFNRCLWLYQQLNNHGIKPDKYTFSLLLTACAGVRDTQHAMQL
FHELRHYRVPLDNYLRANLLTVVARSKQPDMAFAMWVFASSPKPTTLLCN
IVIDLFARTHNISGAESVQRYMNAAQIGADAYTVSALIRAHVATAGAHAA
LRALRDMWRAGLSVHASAFGQVIVAFGQQGLVDEAVALFDEMTVFGVAPQ
QSTFNALISACIGRDVHKAFEIFEEMNASTSFHGDRYTFHALIKCCLAAR
QPHRVAALYDAIARRGFQRNQVSYRYALVAAGMMMDVELVERVARDMRAN
ACEARLDTAATLVAAAIRCSDLQAALSHFSRFVSGGDAARNARFFEEIRA
ALRAFDARGVLDSRHTQRVVDELERSCMRE*

mRNA from alignment at NODE_2244_length_6318_cov_4.442749:398..1540+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2275.t1 ID=Gcaud2275.t1|Name=Gcaud2275.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_2244_length_6318_cov_4.442749:398..1540+ (Gracilaria caudata M_176_S67 male)
ATGCTGGTTCGTCAGAAGCACAACTTCAACCGCTGTTTGTGGCTGTACCA
ACAGCTCAACAACCACGGCATCAAGCCGGACAAGTACACGTTCAGCTTGC
TGCTCACCGCGTGCGCCGGCGTGAGAGACACGCAACATGCCATGCAGCTG
TTCCACGAGCTGCGTCACTACCGTGTGCCACTGGACAATTATCTTCGAGC
CAACCTGCTCACGGTGGTGGCACGCTCCAAACAGCCGGACATGGCGTTTG
CCATGTGGGTGTTCGCGTCCTCTCCAAAGCCCACAACGCTGCTGTGTAAC
ATTGTGATCGACCTCTTCGCGCGCACGCACAACATCAGCGGCGCCGAATC
GGTGCAGCGCTACATGAACGCGGCGCAAATCGGCGCCGATGCATACACGG
TGTCGGCGCTGATCCGCGCGCATGTGGCCACAGCCGGCGCGCACGCGGCG
CTGCGCGCGCTGCGTGACATGTGGCGCGCGGGGCTCAGCGTGCATGCGTC
GGCGTTTGGTCAGGTGATTGTGGCGTTTGGACAGCAGGGGCTGGTGGATG
AGGCGGTGGCTCTTTTCGATGAGATGACCGTGTTCGGCGTGGCGCCGCAA
CAAAGCACGTTCAACGCGTTGATCTCGGCGTGCATCGGACGTGACGTGCA
CAAGGCGTTTGAAATCTTCGAGGAAATGAACGCAAGCACGTCGTTCCACG
GCGACCGATACACGTTCCACGCGCTCATCAAGTGCTGTCTGGCCGCGCGC
CAACCGCACCGCGTCGCAGCGCTGTACGACGCAATCGCACGGCGCGGCTT
TCAGCGCAACCAGGTGAGTTACCGGTACGCGCTGGTGGCGGCGGGCATGA
TGATGGACGTGGAGCTTGTGGAGCGCGTGGCGCGCGACATGCGCGCCAAC
GCGTGCGAGGCGCGGCTGGACACGGCGGCCACGCTGGTGGCGGCGGCGAT
CCGATGCTCGGACCTGCAGGCGGCGCTGAGCCACTTCTCGCGCTTTGTGA
GCGGCGGCGATGCGGCGCGCAACGCGCGCTTCTTTGAGGAGATTCGCGCG
GCGCTGCGCGCGTTTGACGCGCGCGGGGTGCTGGACTCGAGACACACGCA
GCGCGTGGTGGACGAGTTGGAGCGCAGCTGCATGCGCGAGTGA

Coding sequence (CDS) from alignment at NODE_2244_length_6318_cov_4.442749:398..1540+

>Gcaud2275.t1 ID=Gcaud2275.t1|Name=Gcaud2275.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1143bp|location=Sequence derived from alignment at NODE_2244_length_6318_cov_4.442749:398..1540+ (Gracilaria caudata M_176_S67 male)
ATGCTGGTTCGTCAGAAGCACAACTTCAACCGCTGTTTGTGGCTGTACCA
ACAGCTCAACAACCACGGCATCAAGCCGGACAAGTACACGTTCAGCTTGC
TGCTCACCGCGTGCGCCGGCGTGAGAGACACGCAACATGCCATGCAGCTG
TTCCACGAGCTGCGTCACTACCGTGTGCCACTGGACAATTATCTTCGAGC
CAACCTGCTCACGGTGGTGGCACGCTCCAAACAGCCGGACATGGCGTTTG
CCATGTGGGTGTTCGCGTCCTCTCCAAAGCCCACAACGCTGCTGTGTAAC
ATTGTGATCGACCTCTTCGCGCGCACGCACAACATCAGCGGCGCCGAATC
GGTGCAGCGCTACATGAACGCGGCGCAAATCGGCGCCGATGCATACACGG
TGTCGGCGCTGATCCGCGCGCATGTGGCCACAGCCGGCGCGCACGCGGCG
CTGCGCGCGCTGCGTGACATGTGGCGCGCGGGGCTCAGCGTGCATGCGTC
GGCGTTTGGTCAGGTGATTGTGGCGTTTGGACAGCAGGGGCTGGTGGATG
AGGCGGTGGCTCTTTTCGATGAGATGACCGTGTTCGGCGTGGCGCCGCAA
CAAAGCACGTTCAACGCGTTGATCTCGGCGTGCATCGGACGTGACGTGCA
CAAGGCGTTTGAAATCTTCGAGGAAATGAACGCAAGCACGTCGTTCCACG
GCGACCGATACACGTTCCACGCGCTCATCAAGTGCTGTCTGGCCGCGCGC
CAACCGCACCGCGTCGCAGCGCTGTACGACGCAATCGCACGGCGCGGCTT
TCAGCGCAACCAGGTGAGTTACCGGTACGCGCTGGTGGCGGCGGGCATGA
TGATGGACGTGGAGCTTGTGGAGCGCGTGGCGCGCGACATGCGCGCCAAC
GCGTGCGAGGCGCGGCTGGACACGGCGGCCACGCTGGTGGCGGCGGCGAT
CCGATGCTCGGACCTGCAGGCGGCGCTGAGCCACTTCTCGCGCTTTGTGA
GCGGCGGCGATGCGGCGCGCAACGCGCGCTTCTTTGAGGAGATTCGCGCG
GCGCTGCGCGCGTTTGACGCGCGCGGGGTGCTGGACTCGAGACACACGCA
GCGCGTGGTGGACGAGTTGGAGCGCAGCTGCATGCGCGAGTGA