Gcaud2144.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2144.t1
Unique NameGcaud2144.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_116_length_48691_cov_4.274671contigNODE_116_length_48691_cov_4.274671:38704..39127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2144Gcaud2144Gracilaria caudata M_176_S67 malegeneNODE_116_length_48691_cov_4.274671 38704..39127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2144.t1Gcaud2144.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_116_length_48691_cov_4.274671 38704..39127 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2144.t1.stop1Gcaud2144.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_116_length_48691_cov_4.274671 38704..38706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2144.t1.CDS1Gcaud2144.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_116_length_48691_cov_4.274671 38704..38771 -
Gcaud2144.t1.CDS2Gcaud2144.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_116_length_48691_cov_4.274671 38839..39127 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2144.t1.exon1Gcaud2144.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_116_length_48691_cov_4.274671 38704..38771 -
Gcaud2144.t1.exon2Gcaud2144.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_116_length_48691_cov_4.274671 38839..39127 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2144.t1.intron1Gcaud2144.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_116_length_48691_cov_4.274671 38772..38838 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2144.t1.start1Gcaud2144.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_116_length_48691_cov_4.274671 39125..39127 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2144.t1 ID=Gcaud2144.t1|Name=Gcaud2144.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=119bp
MQPTSPQPQSAPFVSQKQLNDHINRQVVVAGTVVIVNQNTIVLDSGVDSK
ITVLRNQPPVMQIDVGSKLLVRGSVKPDLAVVESPTFPPTDVGQNFDLSL
YNQATAVTNHINYSHMFA*
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spliced messenger RNA

>Gcaud2144.t1 ID=Gcaud2144.t1|Name=Gcaud2144.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=357bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:38704..39127- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGACGTCGCCACAGCCCCAGTCAGCCCCGTTCGTGTCCCAGAA
GCAGTTGAATGACCACATTAACCGGCAGGTCGTCGTCGCTGGCACCGTCG
TCATAGTGAATCAAAACACTATCGTCCTGGACAGCGGTGTCGATTCAAAG
ATTACCGTGCTTAGAAATCAACCCCCCGTCATGCAGATTGATGTCGGTTC
CAAGCTTCTTGTCAGGGGTTCGGTCAAGCCGGATCTCGCTGTTGTTGAGA
GCCCCACGTTTCCTCCCACTGACGTCGGCCAGAATTTCGATTTATCGTTG
TATAACCAAGCTACTGCCGTCACAAACCATATCAACTACTCTCACATGTT
TGCCTAG
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protein sequence of Gcaud2144.t1

>Gcaud2144.t1 ID=Gcaud2144.t1|Name=Gcaud2144.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=119bp
MQPTSPQPQSAPFVSQKQLNDHINRQVVVAGTVVIVNQNTIVLDSGVDSK
ITVLRNQPPVMQIDVGSKLLVRGSVKPDLAVVESPTFPPTDVGQNFDLSL
YNQATAVTNHINYSHMFA*
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mRNA from alignment at NODE_116_length_48691_cov_4.274671:38704..39127-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2144.t1 ID=Gcaud2144.t1|Name=Gcaud2144.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=424bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:38704..39127- (Gracilaria caudata M_176_S67 male)
ATGCAGCCGACGTCGCCACAGCCCCAGTCAGCCCCGTTCGTGTCCCAGAA
GCAGTTGAATGACCACATTAACCGGCAGGTCGTCGTCGCTGGCACCGTCG
TCATAGTGAATCAAAACACTATCGTCCTGGACAGCGGTGTCGATTCAAAG
ATTACCGTGCTTAGAAATCAACCCCCCGTCATGCAGATTGATGTCGGTTC
CAAGCTTCTTGTCAGGGGTTCGGTCAAGCCGGATCTCGCTGTTGTTGAGA
GCCCCACGTTTCCTCCCACTGACGTCGGCCAGAATTTCGGTACGTGCCGT
GCATGCTTTGTTCTTCTTATTTGCGCTTATTCGCTGCCACCTCTAACAAA
TTGCAGATTTATCGTTGTATAACCAAGCTACTGCCGTCACAAACCATATC
AACTACTCTCACATGTTTGCCTAG
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Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:38704..39127-

>Gcaud2144.t1 ID=Gcaud2144.t1|Name=Gcaud2144.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=357bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:38704..39127- (Gracilaria caudata M_176_S67 male)
ATGCAGCCGACGTCGCCACAGCCCCAGTCAGCCCCGTTCGTGTCCCAGAA
GCAGTTGAATGACCACATTAACCGGCAGGTCGTCGTCGCTGGCACCGTCG
TCATAGTGAATCAAAACACTATCGTCCTGGACAGCGGTGTCGATTCAAAG
ATTACCGTGCTTAGAAATCAACCCCCCGTCATGCAGATTGATGTCGGTTC
CAAGCTTCTTGTCAGGGGTTCGGTCAAGCCGGATCTCGCTGTTGTTGAGA
GCCCCACGTTTCCTCCCACTGACGTCGGCCAGAATTTCGATTTATCGTTG
TATAACCAAGCTACTGCCGTCACAAACCATATCAACTACTCTCACATGTT
TGCCTAG
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