Gcaud2144.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2144.t1
Unique NameGcaud2144.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length119
Homology
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BLAST of Gcaud2144.t1 vs. uniprot
Match: A0A2V3IH52_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH52_9FLOR)

HSP 1 Score: 106 bits (265), Expect = 1.100e-27
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 0 
Query:   10 SAPFVSQKQLNDHINRQVVVAGTVVIVNQNTIVLDSGVDSKITVLRNQPPVMQIDVGSKLLVRGSVKPDLAVVESPTFPPTDVGQNF 96
            ++PFV+QKQLN H+N++VVVAG V+   Q T++LD    + ITV RNQPP M I+ G+KLLVRG VKPDL+V ESP+FP TDVG NF
Sbjct:    8 ASPFVTQKQLNAHMNQEVVVAGKVLNATQTTLLLDGENSTTITVHRNQPPTMMIETGTKLLVRGMVKPDLSVAESPSFPATDVGDNF 94
The following BLAST results are available for this feature:
BLAST of Gcaud2144.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IH52_9FLOR1.100e-2762.07Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 10..111
e-value: 1.4E-7
score: 31.8
NoneNo IPR availableGENE3D2.40.50.140coord: 8..118
e-value: 4.9E-14
score: 54.2
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 10..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_116_length_48691_cov_4.274671contigNODE_116_length_48691_cov_4.274671:38704..39127 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2144.t1Gcaud2144.t1Gracilaria caudata M_176_S67 malemRNANODE_116_length_48691_cov_4.274671 38704..39127 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2144.t1 ID=Gcaud2144.t1|Name=Gcaud2144.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=119bp
MQPTSPQPQSAPFVSQKQLNDHINRQVVVAGTVVIVNQNTIVLDSGVDSK
ITVLRNQPPVMQIDVGSKLLVRGSVKPDLAVVESPTFPPTDVGQNFDLSL
YNQATAVTNHINYSHMFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013970Rfa2
IPR012340NA-bd_OB-fold