Gcaud2111.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2111.t1
Unique Name	Gcaud2111.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	189

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_112_length_49450_cov_4.312142	contig	NODE_112_length_49450_cov_4.312142:46323..46889 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703958.1
Preferred name	srk1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08286,ko:K08794
KEGG Pathway	ko04921,ko04925,map04921,map04925
GOs	GO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue	5.48e-06
EggNOG OGs	KOG0032@1\|root,KOG0032@2759\|Eukaryota
EC	2.7.11.17
Description	protein serine/threonine kinase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2111	Gcaud2111	Gracilaria caudata M_176_S67 male	gene	NODE_112_length_49450_cov_4.312142 46323..46889 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2111.t1.stop1	Gcaud2111.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_112_length_49450_cov_4.312142 46323..46325 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2111.t1.CDS1	Gcaud2111.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_112_length_49450_cov_4.312142 46323..46889 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2111.t1.exon1	Gcaud2111.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_112_length_49450_cov_4.312142 46323..46889 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2111.t1.start1	Gcaud2111.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_112_length_49450_cov_4.312142 46887..46889 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2111.t1	Gcaud2111.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_112_length_49450_cov_4.312142 46323..46889 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_112_length_49450_cov_4.312142:46323..46889-
coding sequence from alignment at NODE_112_length_49450_cov_4.312142:46323..46889-

mRNA sequence

>Gcaud2111.t1 ID=Gcaud2111.t1|Name=Gcaud2111.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=189bp
MEGFLSKRGKRIGSRVKRYMRLQGAYLSNHHAPSEAPTWRVNIKDASISC
NLHKHRIMLELYANKLELFADSAADCQLWYDALCSVQQHAAEKENQRPTG
SSQQHPKLFNLQSDSAPSQQAPQQAPVTRTSDLGKNFKVVKPKPSASREQ
SNESDEPHPSQQPLAVNGQPYEETPASMIFKQFNFPPK*

spliced messenger RNA

>Gcaud2111.t1 ID=Gcaud2111.t1|Name=Gcaud2111.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=567bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:46323..46889- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGCTTTTTGTCGAAGCGCGGCAAGAGAATTGGCAGTCGCGTCAA
GCGATACATGCGCTTGCAGGGCGCGTATCTCAGCAATCATCATGCGCCGT
CGGAAGCTCCCACATGGCGCGTCAACATCAAGGACGCGTCTATCTCGTGC
AATCTTCACAAGCACCGAATCATGCTGGAGTTGTATGCCAACAAGCTGGA
GTTGTTTGCCGATAGCGCCGCAGATTGTCAGCTTTGGTATGACGCGCTGT
GCAGTGTGCAGCAACACGCCGCGGAAAAGGAGAACCAACGGCCCACGGGC
AGTTCGCAACAGCACCCAAAACTGTTCAACCTGCAGAGCGATAGCGCGCC
GTCACAACAAGCGCCGCAACAAGCGCCTGTCACAAGAACGTCCGATCTGG
GAAAGAACTTTAAGGTCGTCAAGCCGAAGCCGTCCGCGTCGAGAGAACAG
TCCAATGAGTCGGATGAACCTCACCCGTCGCAACAACCGCTTGCTGTCAA
TGGGCAGCCGTACGAAGAAACTCCGGCGTCAATGATCTTCAAGCAGTTCA
ACTTTCCGCCAAAGTAG

protein sequence of Gcaud2111.t1

>Gcaud2111.t1 ID=Gcaud2111.t1|Name=Gcaud2111.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=189bp
MEGFLSKRGKRIGSRVKRYMRLQGAYLSNHHAPSEAPTWRVNIKDASISC
NLHKHRIMLELYANKLELFADSAADCQLWYDALCSVQQHAAEKENQRPTG
SSQQHPKLFNLQSDSAPSQQAPQQAPVTRTSDLGKNFKVVKPKPSASREQ
SNESDEPHPSQQPLAVNGQPYEETPASMIFKQFNFPPK*

mRNA from alignment at NODE_112_length_49450_cov_4.312142:46323..46889-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2111.t1 ID=Gcaud2111.t1|Name=Gcaud2111.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=567bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:46323..46889- (Gracilaria caudata M_176_S67 male)
ATGGAGGGCTTTTTGTCGAAGCGCGGCAAGAGAATTGGCAGTCGCGTCAA
GCGATACATGCGCTTGCAGGGCGCGTATCTCAGCAATCATCATGCGCCGT
CGGAAGCTCCCACATGGCGCGTCAACATCAAGGACGCGTCTATCTCGTGC
AATCTTCACAAGCACCGAATCATGCTGGAGTTGTATGCCAACAAGCTGGA
GTTGTTTGCCGATAGCGCCGCAGATTGTCAGCTTTGGTATGACGCGCTGT
GCAGTGTGCAGCAACACGCCGCGGAAAAGGAGAACCAACGGCCCACGGGC
AGTTCGCAACAGCACCCAAAACTGTTCAACCTGCAGAGCGATAGCGCGCC
GTCACAACAAGCGCCGCAACAAGCGCCTGTCACAAGAACGTCCGATCTGG
GAAAGAACTTTAAGGTCGTCAAGCCGAAGCCGTCCGCGTCGAGAGAACAG
TCCAATGAGTCGGATGAACCTCACCCGTCGCAACAACCGCTTGCTGTCAA
TGGGCAGCCGTACGAAGAAACTCCGGCGTCAATGATCTTCAAGCAGTTCA
ACTTTCCGCCAAAGTAG

Coding sequence (CDS) from alignment at NODE_112_length_49450_cov_4.312142:46323..46889-

>Gcaud2111.t1 ID=Gcaud2111.t1|Name=Gcaud2111.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=567bp|location=Sequence derived from alignment at NODE_112_length_49450_cov_4.312142:46323..46889- (Gracilaria caudata M_176_S67 male)
ATGGAGGGCTTTTTGTCGAAGCGCGGCAAGAGAATTGGCAGTCGCGTCAA
GCGATACATGCGCTTGCAGGGCGCGTATCTCAGCAATCATCATGCGCCGT
CGGAAGCTCCCACATGGCGCGTCAACATCAAGGACGCGTCTATCTCGTGC
AATCTTCACAAGCACCGAATCATGCTGGAGTTGTATGCCAACAAGCTGGA
GTTGTTTGCCGATAGCGCCGCAGATTGTCAGCTTTGGTATGACGCGCTGT
GCAGTGTGCAGCAACACGCCGCGGAAAAGGAGAACCAACGGCCCACGGGC
AGTTCGCAACAGCACCCAAAACTGTTCAACCTGCAGAGCGATAGCGCGCC
GTCACAACAAGCGCCGCAACAAGCGCCTGTCACAAGAACGTCCGATCTGG
GAAAGAACTTTAAGGTCGTCAAGCCGAAGCCGTCCGCGTCGAGAGAACAG
TCCAATGAGTCGGATGAACCTCACCCGTCGCAACAACCGCTTGCTGTCAA
TGGGCAGCCGTACGAAGAAACTCCGGCGTCAATGATCTTCAAGCAGTTCA
ACTTTCCGCCAAAGTAG