Gcaud1989.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1989.t1
Unique Name	Gcaud1989.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	585

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:30140..31894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	529818.AMSG_05362T0
PFAMs	DNA_mis_repair,HATPase_c,HATPase_c_3
Max annot lvl	2759\|Eukaryota
GOs	GO:0000003,GO:0000280,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Evalue	1.17e-06
EggNOG OGs	COG0323@1\|root,KOG1978@2759\|Eukaryota
Description	mismatched DNA binding
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1989	Gcaud1989	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 30140..31894 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1989.t1.start1	Gcaud1989.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 30140..30142 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1989.t1.CDS1	Gcaud1989.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 30140..31894 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1989.t1.exon1	Gcaud1989.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 30140..31894 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1989.t1.stop1	Gcaud1989.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 31892..31894 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1989.t1	Gcaud1989.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 30140..31894 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:30140..31894+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:30140..31894+

mRNA sequence

>Gcaud1989.t1 ID=Gcaud1989.t1|Name=Gcaud1989.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp
MWYIQEESRKKGPKYWLGGTQSANRTIGRKMVDIRLKASSVSRIHARLIV
KPASYYAPAGSHRQTTVVCVVDSSAYGTFLKYPKNHVASREEPAGHHRRL
NKEHPTEVYEGALLAFGAPSAWWQVCWYPILVLPSRLPAAARTRLVEVAS
TTSLQVTDQMSENVTHLVTTACVSTSQKFLLMLARNGHVVQPAWLEALHM
VVLNACTSVAVAESDDIASASTCLPLEENYLPPFSEADAAKYLPDVLQNV
LKPPQREKRKNMFDNIVFAFETEDRSCWWAPIVDLLGGVTVLSKVLGRRP
ELKGKRVLYLGDQALERVKHAHDVSGPCNREKDVIECILRADLTPIESAL
DAVREELFRPGNTRVDIGNNLQKSVIPLGVAEVTDVATPGPLDADSDVES
DMSGAAEAYRTSSRSNAKNLSPAQGAGRATGTIAKTVSERVPKWEDQKRN
AQTREKDADLQQKRARPGTHQRESGNPIPENDRDIGPQIVNDADLEEGIE
FDGERDNERVFFPVSSAPSQPSLSGIPVEGGDVRPFRRRKLPSAPSLPLK
RVKVLDETNIYNVGGRRPLISQEDEDNDTKEVRD*

spliced messenger RNA

>Gcaud1989.t1 ID=Gcaud1989.t1|Name=Gcaud1989.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:30140..31894+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTACATTCAAGAAGAGTCTCGAAAGAAGGGACCGAAGTATTGGCT
CGGGGGAACCCAGTCGGCGAATCGCACCATTGGTCGAAAGATGGTTGACA
TTCGCTTGAAGGCGTCGTCCGTGTCGCGGATTCATGCCAGACTCATCGTT
AAGCCAGCCTCGTATTACGCCCCTGCAGGTTCGCACCGCCAAACGACAGT
CGTATGTGTCGTCGACTCGTCTGCATATGGCACCTTTCTCAAGTACCCCA
AGAATCATGTTGCGAGCAGAGAAGAGCCCGCCGGTCATCATCGTCGCCTC
AACAAAGAGCATCCCACGGAGGTTTATGAGGGCGCTCTTCTGGCCTTTGG
AGCTCCAAGTGCGTGGTGGCAAGTGTGTTGGTATCCTATACTTGTGCTTC
CGTCACGGCTACCAGCGGCAGCTCGTACTCGTCTGGTAGAAGTTGCTTCT
ACGACGTCGCTGCAGGTAACAGACCAGATGTCTGAGAATGTAACTCATCT
TGTTACAACCGCATGCGTATCCACGAGTCAAAAATTTCTGCTTATGTTGG
CGAGAAACGGGCACGTCGTGCAACCCGCTTGGCTAGAGGCGCTTCATATG
GTCGTTCTCAACGCTTGTACCTCAGTTGCCGTTGCCGAGTCAGATGACAT
CGCAAGTGCATCCACATGCCTTCCCCTTGAAGAAAACTACCTTCCGCCTT
TCTCCGAAGCAGATGCTGCGAAGTACCTGCCTGATGTTCTTCAGAACGTC
TTGAAGCCACCACAAAGAGAAAAACGGAAGAATATGTTTGACAATATTGT
CTTCGCGTTTGAAACCGAAGATCGAAGCTGTTGGTGGGCACCGATTGTTG
ATTTGCTGGGTGGAGTAACTGTGTTGTCTAAAGTGTTGGGTAGAAGACCT
GAATTGAAGGGAAAGCGAGTTCTATACCTTGGAGATCAGGCACTCGAGAG
AGTCAAGCATGCCCATGATGTCAGTGGCCCCTGCAATAGGGAAAAAGATG
TAATAGAGTGCATTCTTCGAGCCGACCTAACACCCATTGAATCTGCATTA
GATGCTGTGCGCGAAGAACTTTTTAGACCTGGGAATACACGAGTCGACAT
TGGTAACAATCTCCAGAAGTCAGTGATTCCCTTAGGAGTGGCAGAAGTCA
CTGATGTTGCCACTCCGGGTCCACTTGATGCGGACAGCGATGTTGAAAGT
GATATGAGTGGTGCCGCTGAAGCATATCGCACCTCTTCTCGGAGCAACGC
GAAGAACTTATCGCCAGCACAAGGAGCTGGACGAGCGACCGGGACCATTG
CAAAGACAGTTTCCGAAAGGGTTCCGAAGTGGGAAGATCAAAAGAGAAAC
GCCCAAACCCGCGAAAAGGACGCAGACCTGCAACAAAAGAGAGCTCGTCC
TGGCACTCACCAAAGAGAATCTGGCAACCCCATACCTGAAAATGACCGGG
ATATCGGCCCCCAAATTGTGAATGATGCGGATTTGGAAGAAGGGATTGAA
TTTGACGGAGAAAGGGATAACGAAAGAGTCTTTTTTCCGGTTTCATCAGC
ACCATCCCAACCAAGCCTAAGTGGTATCCCAGTTGAAGGCGGTGATGTTC
GCCCTTTTCGAAGGCGAAAGCTGCCGTCAGCCCCTTCTCTTCCGCTGAAG
AGAGTAAAAGTTCTGGACGAGACAAACATATATAATGTTGGGGGTCGAAG
ACCTCTGATTTCCCAAGAAGATGAAGACAATGATACGAAAGAAGTCAGAG
ATTAG

protein sequence of Gcaud1989.t1

>Gcaud1989.t1 ID=Gcaud1989.t1|Name=Gcaud1989.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=585bp
MWYIQEESRKKGPKYWLGGTQSANRTIGRKMVDIRLKASSVSRIHARLIV
KPASYYAPAGSHRQTTVVCVVDSSAYGTFLKYPKNHVASREEPAGHHRRL
NKEHPTEVYEGALLAFGAPSAWWQVCWYPILVLPSRLPAAARTRLVEVAS
TTSLQVTDQMSENVTHLVTTACVSTSQKFLLMLARNGHVVQPAWLEALHM
VVLNACTSVAVAESDDIASASTCLPLEENYLPPFSEADAAKYLPDVLQNV
LKPPQREKRKNMFDNIVFAFETEDRSCWWAPIVDLLGGVTVLSKVLGRRP
ELKGKRVLYLGDQALERVKHAHDVSGPCNREKDVIECILRADLTPIESAL
DAVREELFRPGNTRVDIGNNLQKSVIPLGVAEVTDVATPGPLDADSDVES
DMSGAAEAYRTSSRSNAKNLSPAQGAGRATGTIAKTVSERVPKWEDQKRN
AQTREKDADLQQKRARPGTHQRESGNPIPENDRDIGPQIVNDADLEEGIE
FDGERDNERVFFPVSSAPSQPSLSGIPVEGGDVRPFRRRKLPSAPSLPLK
RVKVLDETNIYNVGGRRPLISQEDEDNDTKEVRD*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:30140..31894+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1989.t1 ID=Gcaud1989.t1|Name=Gcaud1989.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:30140..31894+ (Gracilaria caudata M_176_S67 male)
ATGTGGTACATTCAAGAAGAGTCTCGAAAGAAGGGACCGAAGTATTGGCT
CGGGGGAACCCAGTCGGCGAATCGCACCATTGGTCGAAAGATGGTTGACA
TTCGCTTGAAGGCGTCGTCCGTGTCGCGGATTCATGCCAGACTCATCGTT
AAGCCAGCCTCGTATTACGCCCCTGCAGGTTCGCACCGCCAAACGACAGT
CGTATGTGTCGTCGACTCGTCTGCATATGGCACCTTTCTCAAGTACCCCA
AGAATCATGTTGCGAGCAGAGAAGAGCCCGCCGGTCATCATCGTCGCCTC
AACAAAGAGCATCCCACGGAGGTTTATGAGGGCGCTCTTCTGGCCTTTGG
AGCTCCAAGTGCGTGGTGGCAAGTGTGTTGGTATCCTATACTTGTGCTTC
CGTCACGGCTACCAGCGGCAGCTCGTACTCGTCTGGTAGAAGTTGCTTCT
ACGACGTCGCTGCAGGTAACAGACCAGATGTCTGAGAATGTAACTCATCT
TGTTACAACCGCATGCGTATCCACGAGTCAAAAATTTCTGCTTATGTTGG
CGAGAAACGGGCACGTCGTGCAACCCGCTTGGCTAGAGGCGCTTCATATG
GTCGTTCTCAACGCTTGTACCTCAGTTGCCGTTGCCGAGTCAGATGACAT
CGCAAGTGCATCCACATGCCTTCCCCTTGAAGAAAACTACCTTCCGCCTT
TCTCCGAAGCAGATGCTGCGAAGTACCTGCCTGATGTTCTTCAGAACGTC
TTGAAGCCACCACAAAGAGAAAAACGGAAGAATATGTTTGACAATATTGT
CTTCGCGTTTGAAACCGAAGATCGAAGCTGTTGGTGGGCACCGATTGTTG
ATTTGCTGGGTGGAGTAACTGTGTTGTCTAAAGTGTTGGGTAGAAGACCT
GAATTGAAGGGAAAGCGAGTTCTATACCTTGGAGATCAGGCACTCGAGAG
AGTCAAGCATGCCCATGATGTCAGTGGCCCCTGCAATAGGGAAAAAGATG
TAATAGAGTGCATTCTTCGAGCCGACCTAACACCCATTGAATCTGCATTA
GATGCTGTGCGCGAAGAACTTTTTAGACCTGGGAATACACGAGTCGACAT
TGGTAACAATCTCCAGAAGTCAGTGATTCCCTTAGGAGTGGCAGAAGTCA
CTGATGTTGCCACTCCGGGTCCACTTGATGCGGACAGCGATGTTGAAAGT
GATATGAGTGGTGCCGCTGAAGCATATCGCACCTCTTCTCGGAGCAACGC
GAAGAACTTATCGCCAGCACAAGGAGCTGGACGAGCGACCGGGACCATTG
CAAAGACAGTTTCCGAAAGGGTTCCGAAGTGGGAAGATCAAAAGAGAAAC
GCCCAAACCCGCGAAAAGGACGCAGACCTGCAACAAAAGAGAGCTCGTCC
TGGCACTCACCAAAGAGAATCTGGCAACCCCATACCTGAAAATGACCGGG
ATATCGGCCCCCAAATTGTGAATGATGCGGATTTGGAAGAAGGGATTGAA
TTTGACGGAGAAAGGGATAACGAAAGAGTCTTTTTTCCGGTTTCATCAGC
ACCATCCCAACCAAGCCTAAGTGGTATCCCAGTTGAAGGCGGTGATGTTC
GCCCTTTTCGAAGGCGAAAGCTGCCGTCAGCCCCTTCTCTTCCGCTGAAG
AGAGTAAAAGTTCTGGACGAGACAAACATATATAATGTTGGGGGTCGAAG
ACCTCTGATTTCCCAAGAAGATGAAGACAATGATACGAAAGAAGTCAGAG
ATTAG

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:30140..31894+

>Gcaud1989.t1 ID=Gcaud1989.t1|Name=Gcaud1989.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1755bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:30140..31894+ (Gracilaria caudata M_176_S67 male)
ATGTGGTACATTCAAGAAGAGTCTCGAAAGAAGGGACCGAAGTATTGGCT
CGGGGGAACCCAGTCGGCGAATCGCACCATTGGTCGAAAGATGGTTGACA
TTCGCTTGAAGGCGTCGTCCGTGTCGCGGATTCATGCCAGACTCATCGTT
AAGCCAGCCTCGTATTACGCCCCTGCAGGTTCGCACCGCCAAACGACAGT
CGTATGTGTCGTCGACTCGTCTGCATATGGCACCTTTCTCAAGTACCCCA
AGAATCATGTTGCGAGCAGAGAAGAGCCCGCCGGTCATCATCGTCGCCTC
AACAAAGAGCATCCCACGGAGGTTTATGAGGGCGCTCTTCTGGCCTTTGG
AGCTCCAAGTGCGTGGTGGCAAGTGTGTTGGTATCCTATACTTGTGCTTC
CGTCACGGCTACCAGCGGCAGCTCGTACTCGTCTGGTAGAAGTTGCTTCT
ACGACGTCGCTGCAGGTAACAGACCAGATGTCTGAGAATGTAACTCATCT
TGTTACAACCGCATGCGTATCCACGAGTCAAAAATTTCTGCTTATGTTGG
CGAGAAACGGGCACGTCGTGCAACCCGCTTGGCTAGAGGCGCTTCATATG
GTCGTTCTCAACGCTTGTACCTCAGTTGCCGTTGCCGAGTCAGATGACAT
CGCAAGTGCATCCACATGCCTTCCCCTTGAAGAAAACTACCTTCCGCCTT
TCTCCGAAGCAGATGCTGCGAAGTACCTGCCTGATGTTCTTCAGAACGTC
TTGAAGCCACCACAAAGAGAAAAACGGAAGAATATGTTTGACAATATTGT
CTTCGCGTTTGAAACCGAAGATCGAAGCTGTTGGTGGGCACCGATTGTTG
ATTTGCTGGGTGGAGTAACTGTGTTGTCTAAAGTGTTGGGTAGAAGACCT
GAATTGAAGGGAAAGCGAGTTCTATACCTTGGAGATCAGGCACTCGAGAG
AGTCAAGCATGCCCATGATGTCAGTGGCCCCTGCAATAGGGAAAAAGATG
TAATAGAGTGCATTCTTCGAGCCGACCTAACACCCATTGAATCTGCATTA
GATGCTGTGCGCGAAGAACTTTTTAGACCTGGGAATACACGAGTCGACAT
TGGTAACAATCTCCAGAAGTCAGTGATTCCCTTAGGAGTGGCAGAAGTCA
CTGATGTTGCCACTCCGGGTCCACTTGATGCGGACAGCGATGTTGAAAGT
GATATGAGTGGTGCCGCTGAAGCATATCGCACCTCTTCTCGGAGCAACGC
GAAGAACTTATCGCCAGCACAAGGAGCTGGACGAGCGACCGGGACCATTG
CAAAGACAGTTTCCGAAAGGGTTCCGAAGTGGGAAGATCAAAAGAGAAAC
GCCCAAACCCGCGAAAAGGACGCAGACCTGCAACAAAAGAGAGCTCGTCC
TGGCACTCACCAAAGAGAATCTGGCAACCCCATACCTGAAAATGACCGGG
ATATCGGCCCCCAAATTGTGAATGATGCGGATTTGGAAGAAGGGATTGAA
TTTGACGGAGAAAGGGATAACGAAAGAGTCTTTTTTCCGGTTTCATCAGC
ACCATCCCAACCAAGCCTAAGTGGTATCCCAGTTGAAGGCGGTGATGTTC
GCCCTTTTCGAAGGCGAAAGCTGCCGTCAGCCCCTTCTCTTCCGCTGAAG
AGAGTAAAAGTTCTGGACGAGACAAACATATATAATGTTGGGGGTCGAAG
ACCTCTGATTTCCCAAGAAGATGAAGACAATGATACGAAAGAAGTCAGAG
ATTAG