Gcaud1989.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1989.t1
Unique NameGcaud1989.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length585
Homology
BLAST of Gcaud1989.t1 vs. uniprot
Match: A0A2V3IZ00_9FLOR (Nijmegen breakage syndrome 1 protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ00_9FLOR)

HSP 1 Score: 616 bits (1589), Expect = 6.340e-214
Identity = 343/579 (59.24%), Postives = 417/579 (72.02%), Query Frame = 0
Query:    1 MWYIQEESRKKGPKYWLGGTQSANRTIGRKMVDIRLKASSVSRIHARLIVKPASYYAPAGSHRQTTVVCVVDSSAYGTFLKYPKNHVASREEPAGHHRRLNKEHPTEVYEGALLAFGAPSAWWQVCWYPILVLPSRLPAAARTRLVEVASTTSLQVTDQMSENVTHLVTTACVSTSQKFLLMLARNGHVVQPAWLEALHMVVLNACTSVAVAESDDIASASTCLPLEENYLPPFSEADAAKYLPDVLQNVLKPPQREKRKNMFDNIVFAFETEDRSCWWAPIVDLLGGVTVLSKVLGRRPELKGKRVLYLGDQALERVKHAHDVSG-PCNREKDVIECILRADLTPIESALDAVREELFRPGNTRVDIGNNLQKSVIPLGVAEVTDVATPGPLDADSDVESDMSGAAEAYRTSSRSNAKNLSPAQG-AGRATGTIAKTVSERVPKWEDQKRNAQTREKDADLQQKRARPGTHQRE---SGNPIPENDRDIGPQIVNDADLEEGIEFDGERDNERVFFPVSSAPSQPSLSGIPV-EGGDVRPFRRRKLPSAPSLPLKRVKVLDETNIYNVGGRRPLISQE 573
            MWYIQEESRK GPKYWLGGTQS  RTIGRK+VDIRL+ASSVSR+HA++ V  AS+YAP G H+QT+ V V D SAYGTFLKYP+NH+ASR+EPAGHHRRLNK+ PT+VYEGALLAFGAPSAWWQVCW+PILVLPSRL  A R RL EV++ TSLQ T+QM+++VTHL+T+ CVSTSQKFL MLARNGHVVQ AWLEAL MVV+NAC S+  AE++D+A A+T LP+EENYLPPFS+ D + Y+PDVLQNVLKP QRE+RKNMF +IVFAF  E+R  WWA I+D LGGVTVLS+ +  RPEL+G RVLYL D A  R  H   VSG     EKDVIE ILRADL PIE ALD VR E  +  N R   G+N Q+S    G A+ TDVATPGPLDA+SD ES  SGAA+AYR   +S A  +S  +  A  A    ++  S + P  ++ ++  Q   KD +L +KR R  + Q E      P   N  D     +   D+     FD    ++R FF V +AP+    +G  V + GDVRPFR+RKLPSA S+PL+RVKV+ E  +YN G +R L+SQ+
Sbjct:    1 MWYIQEESRKHGPKYWLGGTQSHGRTIGRKVVDIRLRASSVSRVHAKICVHTASFYAPPGKHKQTSGVSVTDFSAYGTFLKYPQNHIASRDEPAGHHRRLNKDDPTDVYEGALLAFGAPSAWWQVCWWPILVLPSRLSPAERARLDEVSAWTSLQETEQMTDSVTHLITSTCVSTSQKFLTMLARNGHVVQLAWLEALQMVVVNACKSILSAETEDVAIAATHLPIEENYLPPFSQQDLSNYVPDVLQNVLKPTQRERRKNMFRDIVFAFVREERRAWWASIIDHLGGVTVLSRAIPERPELRGSRVLYLKDIAEGR--HFERVSGFTYMEEKDVIESILRADLIPIEYALDLVRLENPKQCNPRTAQGSNQQRSGQTSGGADTTDVATPGPLDAESDDESYASGAADAYRRCGQSKATVMSAGEERAVEARSVGSRDKSRQNPSVQESEQGTQRLTKDRELHRKRLRSASDQGEHVGKTGPHATNQCDDPSNEITPHDVSL---FDEISHSKREFFSVPAAPNSEHKAGASVGDEGDVRPFRKRKLPSATSVPLRRVKVVRERRVYNTGAKRRLVSQD 574          
BLAST of Gcaud1989.t1 vs. uniprot
Match: R7Q8S1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8S1_CHOCR)

HSP 1 Score: 313 bits (802), Expect = 2.340e-95
Identity = 228/608 (37.50%), Postives = 320/608 (52.63%), Query Frame = 0
Query:    1 MWYIQE-----ESRKK-GPKYWLGGTQSANRTIGRKMVDIRLKASSVSRIHARLIVKPASYYAPAGSH----RQTTVVCVVDSSAYGTFLKYPKNHVASREEPA-GHHRRLNKEHPTEVYEGALLAFGAPSAWWQVCWYPILVLPSRLPAAARTRLVEVASTTSLQVTDQMSENVTHLVTTACVSTSQKFLLMLARNGHVVQPAWLEALHMVVLNACTSVAVAESDDIASASTCL--PLEENYLPPFSEADAAKYLPDVLQNVLKPPQREKRKNMFDNIVFAFETEDRSCWWAPIVDLLGGVTVLSKVLGRRPELKGKRVLYLGDQALERVKHAHDVSGPCNR-EKDVIECILRADLTPIESALDAVREELFRPGNTRVDIGNNLQKSVIPLGVAEVTDVATPGPLDADSDVESDMSGAAEAYRTSSRSNAKNLSP----AQGAGRATGTIAKTVSERVPKWEDQKRNAQTREKDAD------------------LQQKRARPGTHQRESGNPIPENDRDIGPQIVNDADLEEGIE---------FDGERDNERVFFPVSSAPSQPSLSGIPVE-------GGDVRPFRRRKLPSAPSLPLKRVKVLD 556
            MWY+ E     + R K  P+YWLGG +   RTIGRK VDIRL A+SVSR HAR+ V  A +Y+P          +T V + DSSAYGTF+KYP +H ++R + A GHHRRL+K  PTEV++GA LAFGAP  WW++     +++PSRL  A R RL  +A  TS+++ D  +E  THL+T  C S+S KFL +LA   HVV  AW+EAL  VV  +C   A  +S D+ +A+     P E+ ++PPFS AD A +  + L  +L  P +E+RK++F N+ FAF  E+R   W  I++ LGG T L+K +     ++G   +     A ++V    D +G     E  +   I+RA+L P+E A                 +  +   S+I L  AEVTDVATPGPLD++SDV+SD S  A   R ++R     ++P    A G G A+  +AK  S R       +R A + E D                      +KRARP        + +P   R         AD  E ++          +    NER FF V    S   + G  +E       G +VRPFRRRKLP+A ++P+K V+ +D
Sbjct:    1 MWYVVELIKEGDPRPKIRPRYWLGGVEGGGRTIGRKHVDIRLPANSVSRTHARVSVAKAPFYSPPSQSCRRKHHSTCVYIEDSSAYGTFVKYPASHPSNRAQMAVGHHRRLDKSTPTEVWDGAFLAFGAPHDWWRLGRENFVLVPSRLSQAERNRLFVIADITSVEIGDTWTEESTHLITDECSSSSIKFLSVLAEGKHVVTNAWVEALRHVVAESCR--ANTDSTDVEAAAKAAETPDEKRFVPPFSSADQAAFAAEDLAAILDDPVKERRKHLFKNVNFAFSREERRSRWVAILEGLGGSTTLAKAITSPGPVEGVVFVQGEHGASKKVHEPVDTTGRTFLPESALAAAIIRANLMPLELACT---------------VPVSAASSLIKLNAAEVTDVATPGPLDSESDVDSDESDTANERRQATRRPIVPMNPDDSVADGDGNAS--VAKPKSLR-----SSERGALSAEGDRAEGKPATASEPSRTTASNVAAKKRARPVPGSSLDESELPPAKRTAALVSEEPADGVEKVQATSSVVAEQINNSDFNERSFFSVGELTSGAHVVGGSIEAKASAVSGANVRPFRRRKLPNAKAVPVKLVRYVD 584          
The following BLAST results are available for this feature:
BLAST of Gcaud1989.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IZ00_9FLOR6.340e-21459.24Nijmegen breakage syndrome 1 protein n=1 Tax=Graci... [more]
R7Q8S1_CHOCR2.340e-9537.50Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 129..202
e-value: 5.9E-9
score: 38.0
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 137..197
NoneNo IPR availableGENE3D2.60.200.20coord: 9..126
e-value: 2.5E-9
score: 39.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 569..584
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 564..584
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 439..470
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..426
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 387..547
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..277
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 297..584
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 278..296
IPR000253Forkhead-associated (FHA) domainPFAMPF00498FHAcoord: 26..117
e-value: 5.3E-6
score: 26.7
IPR000253Forkhead-associated (FHA) domainPROSITEPS50006FHA_DOMAINcoord: 25..85
score: 7.3175
IPR000253Forkhead-associated (FHA) domainCDDcd00060FHAcoord: 26..120
e-value: 7.8613E-5
score: 40.0622
IPR040227Nibrin-relatedPANTHERPTHR12162NIBRIN-RELATEDcoord: 1..477
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 131..195
score: 8.8884
IPR008984SMAD/FHA domain superfamilySUPERFAMILY49879SMAD/FHA domaincoord: 23..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:30140..31894 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1989.t1Gcaud1989.t1Gracilaria caudata M_176_S67 malemRNANODE_5_length_105932_cov_4.447794 30140..31894 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1989.t1 ID=Gcaud1989.t1|Name=Gcaud1989.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=585bp
MWYIQEESRKKGPKYWLGGTQSANRTIGRKMVDIRLKASSVSRIHARLIV
KPASYYAPAGSHRQTTVVCVVDSSAYGTFLKYPKNHVASREEPAGHHRRL
NKEHPTEVYEGALLAFGAPSAWWQVCWYPILVLPSRLPAAARTRLVEVAS
TTSLQVTDQMSENVTHLVTTACVSTSQKFLLMLARNGHVVQPAWLEALHM
VVLNACTSVAVAESDDIASASTCLPLEENYLPPFSEADAAKYLPDVLQNV
LKPPQREKRKNMFDNIVFAFETEDRSCWWAPIVDLLGGVTVLSKVLGRRP
ELKGKRVLYLGDQALERVKHAHDVSGPCNREKDVIECILRADLTPIESAL
DAVREELFRPGNTRVDIGNNLQKSVIPLGVAEVTDVATPGPLDADSDVES
DMSGAAEAYRTSSRSNAKNLSPAQGAGRATGTIAKTVSERVPKWEDQKRN
AQTREKDADLQQKRARPGTHQRESGNPIPENDRDIGPQIVNDADLEEGIE
FDGERDNERVFFPVSSAPSQPSLSGIPVEGGDVRPFRRRKLPSAPSLPLK
RVKVLDETNIYNVGGRRPLISQEDEDNDTKEVRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR000253FHA_dom
IPR040227Nibrin-rel
IPR001357BRCT_dom
IPR008984SMAD_FHA_dom_sf