Gcaud198.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud198.t1
Unique Name	Gcaud198.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	622

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1898_length_7812_cov_5.919700	contig	NODE_1898_length_7812_cov_5.919700:1322..3187 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud198	Gcaud198	Gracilaria caudata M_176_S67 male	gene	NODE_1898_length_7812_cov_5.919700 1322..3187 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud198.t1.stop1	Gcaud198.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1898_length_7812_cov_5.919700 1322..1324 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud198.t1.CDS1	Gcaud198.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1898_length_7812_cov_5.919700 1322..3187 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud198.t1.exon1	Gcaud198.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1898_length_7812_cov_5.919700 1322..3187 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud198.t1.start1	Gcaud198.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1898_length_7812_cov_5.919700 3185..3187 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud198.t1	Gcaud198.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1898_length_7812_cov_5.919700 1322..3187 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1898_length_7812_cov_5.919700:1322..3187-
coding sequence from alignment at NODE_1898_length_7812_cov_5.919700:1322..3187-

mRNA sequence

>Gcaud198.t1 ID=Gcaud198.t1|Name=Gcaud198.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=622bp
MSSSDIDPFKEALALETEVKLNNDIDAMIRLGNLLITDRRLGSQQARGFQ
MLERAVKQGHHPCAMNCLAYHLLTSGMTECYSRAVSLLERSVKLQENPLF
INMLGLCYRIGKGVAKDGDIARQLFQRALRLKQDPRIMGNLAIQLLETPK
LHAQTERAIALYEKAVQLSSHPEMMNNLALMYHTGNGNLKRCTKKAEKWY
SRAIRKHSYAPSIRKLAILLLENSPSCADIRRAVQLLEDAMDQEQEQHIE
TILRLADTYRGYRIDPDRALLLYEIAAIRFDSPDARCVLLGSWIGGVVGL
RPDHVRILDFCLDDARKTGNYCSVVTAATMIWTGAEHIRRDRTVALKFLS
SHGLSDHAFFTLLLRRDLSCFPGGRRSAQRLTKSYEKKIDRSNCGRVDAI
ILSENGGAEDKAVAMSHFRAQRANESLIAWLAPLLRMGRYRIPFDGHLDC
ITDPVTKFARGEHIASLNLASLLLEIEGMQQEAVTILEELMNSDLKLIAS
LNLAYVLMSDVEGVKQDRKRGMKLLEEVVKDTNDVSARAMLANALSERSD
SDRGAIERGWELWQGVIRALEDEEELRKVGRLVSEISKERWREYFRQQPE
EMRETCSSSATGLNCNEGFKH*

spliced messenger RNA

>Gcaud198.t1 ID=Gcaud198.t1|Name=Gcaud198.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at NODE_1898_length_7812_cov_5.919700:1322..3187- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCCAGCGACATAGACCCGTTCAAGGAAGCGCTAGCCTTAGAGAC
AGAGGTGAAGCTCAACAACGATATCGACGCCATGATTAGGTTGGGTAACC
TGTTGATCACAGACCGCAGACTTGGCTCACAGCAAGCACGAGGCTTCCAA
ATGTTAGAGCGCGCCGTGAAGCAGGGGCATCATCCGTGTGCCATGAACTG
CCTAGCATACCATTTGCTGACCAGTGGCATGACCGAATGTTACTCGCGCG
CCGTTTCACTCCTCGAGCGCTCGGTGAAGCTGCAAGAGAATCCGCTTTTT
ATCAACATGTTGGGGTTGTGTTATCGCATCGGCAAAGGAGTTGCCAAAGA
TGGTGACATTGCGAGACAACTGTTTCAACGAGCTTTGCGACTAAAGCAAG
ATCCTCGGATTATGGGTAACTTGGCGATACAGCTGCTCGAGACGCCCAAG
CTTCATGCACAGACGGAACGCGCCATCGCACTGTATGAGAAGGCTGTTCA
GCTTTCTTCGCACCCCGAAATGATGAACAATTTGGCTCTTATGTATCATA
CTGGAAATGGAAATCTTAAGAGATGTACCAAGAAAGCGGAAAAGTGGTAT
TCGCGCGCCATCAGAAAGCACAGCTATGCGCCATCAATCCGAAAGCTAGC
TATTCTGCTTTTAGAAAATAGTCCCAGTTGCGCAGACATCAGACGAGCCG
TTCAGTTGCTAGAAGATGCGATGGATCAAGAACAGGAACAACACATAGAA
ACGATTTTACGGTTGGCAGATACTTATCGCGGATACCGCATTGATCCTGA
CCGCGCTCTGCTACTTTATGAAATTGCTGCAATTCGTTTTGATTCACCTG
ATGCGAGGTGTGTGCTGCTTGGTTCTTGGATTGGGGGTGTGGTAGGCTTG
CGACCTGACCATGTGCGTATTCTCGATTTCTGCTTGGATGATGCTCGAAA
GACAGGTAACTATTGCTCCGTTGTTACTGCGGCAACAATGATATGGACTG
GGGCAGAACATATACGGAGGGACAGGACGGTCGCCCTTAAGTTTTTGTCT
TCTCATGGACTAAGTGACCATGCCTTTTTTACGTTGTTGTTGAGACGTGA
TTTGAGCTGCTTTCCTGGTGGCCGAAGAAGTGCTCAAAGACTTACAAAGA
GCTATGAGAAGAAAATAGACCGATCTAATTGTGGTCGCGTGGACGCAATC
ATTCTCAGTGAAAACGGTGGTGCGGAAGATAAGGCAGTAGCGATGTCCCA
CTTCCGAGCTCAAAGGGCTAATGAGAGTCTAATCGCTTGGTTGGCTCCTT
TGCTTCGAATGGGCCGTTACAGGATACCCTTCGATGGACATCTAGACTGT
ATCACGGATCCGGTGACAAAATTTGCACGAGGGGAACACATTGCCTCACT
AAATCTCGCTAGCCTCCTACTCGAGATTGAAGGAATGCAACAAGAGGCTG
TGACAATACTGGAAGAATTGATGAACAGCGACTTGAAGTTGATCGCTTCA
CTGAATCTGGCGTATGTTCTGATGAGCGATGTCGAAGGAGTGAAGCAGGA
TCGGAAAAGGGGAATGAAACTTCTGGAAGAGGTAGTGAAGGATACGAATG
ACGTTTCGGCTCGAGCGATGCTAGCTAACGCGTTGTCAGAAAGATCGGAT
TCTGATCGTGGCGCCATTGAGAGGGGATGGGAATTATGGCAAGGCGTAAT
CCGCGCGTTGGAGGATGAGGAGGAGCTACGAAAAGTTGGAAGACTTGTGT
CGGAAATCAGCAAGGAGAGGTGGAGGGAATATTTTCGCCAACAGCCCGAA
GAGATGAGGGAGACTTGCTCATCGAGTGCAACTGGTCTTAATTGCAATGA
AGGATTCAAGCACTAG

protein sequence of Gcaud198.t1

>Gcaud198.t1 ID=Gcaud198.t1|Name=Gcaud198.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=622bp
MSSSDIDPFKEALALETEVKLNNDIDAMIRLGNLLITDRRLGSQQARGFQ
MLERAVKQGHHPCAMNCLAYHLLTSGMTECYSRAVSLLERSVKLQENPLF
INMLGLCYRIGKGVAKDGDIARQLFQRALRLKQDPRIMGNLAIQLLETPK
LHAQTERAIALYEKAVQLSSHPEMMNNLALMYHTGNGNLKRCTKKAEKWY
SRAIRKHSYAPSIRKLAILLLENSPSCADIRRAVQLLEDAMDQEQEQHIE
TILRLADTYRGYRIDPDRALLLYEIAAIRFDSPDARCVLLGSWIGGVVGL
RPDHVRILDFCLDDARKTGNYCSVVTAATMIWTGAEHIRRDRTVALKFLS
SHGLSDHAFFTLLLRRDLSCFPGGRRSAQRLTKSYEKKIDRSNCGRVDAI
ILSENGGAEDKAVAMSHFRAQRANESLIAWLAPLLRMGRYRIPFDGHLDC
ITDPVTKFARGEHIASLNLASLLLEIEGMQQEAVTILEELMNSDLKLIAS
LNLAYVLMSDVEGVKQDRKRGMKLLEEVVKDTNDVSARAMLANALSERSD
SDRGAIERGWELWQGVIRALEDEEELRKVGRLVSEISKERWREYFRQQPE
EMRETCSSSATGLNCNEGFKH*

mRNA from alignment at NODE_1898_length_7812_cov_5.919700:1322..3187-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud198.t1 ID=Gcaud198.t1|Name=Gcaud198.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at NODE_1898_length_7812_cov_5.919700:1322..3187- (Gracilaria caudata M_176_S67 male)
ATGTCCTCCAGCGACATAGACCCGTTCAAGGAAGCGCTAGCCTTAGAGAC
AGAGGTGAAGCTCAACAACGATATCGACGCCATGATTAGGTTGGGTAACC
TGTTGATCACAGACCGCAGACTTGGCTCACAGCAAGCACGAGGCTTCCAA
ATGTTAGAGCGCGCCGTGAAGCAGGGGCATCATCCGTGTGCCATGAACTG
CCTAGCATACCATTTGCTGACCAGTGGCATGACCGAATGTTACTCGCGCG
CCGTTTCACTCCTCGAGCGCTCGGTGAAGCTGCAAGAGAATCCGCTTTTT
ATCAACATGTTGGGGTTGTGTTATCGCATCGGCAAAGGAGTTGCCAAAGA
TGGTGACATTGCGAGACAACTGTTTCAACGAGCTTTGCGACTAAAGCAAG
ATCCTCGGATTATGGGTAACTTGGCGATACAGCTGCTCGAGACGCCCAAG
CTTCATGCACAGACGGAACGCGCCATCGCACTGTATGAGAAGGCTGTTCA
GCTTTCTTCGCACCCCGAAATGATGAACAATTTGGCTCTTATGTATCATA
CTGGAAATGGAAATCTTAAGAGATGTACCAAGAAAGCGGAAAAGTGGTAT
TCGCGCGCCATCAGAAAGCACAGCTATGCGCCATCAATCCGAAAGCTAGC
TATTCTGCTTTTAGAAAATAGTCCCAGTTGCGCAGACATCAGACGAGCCG
TTCAGTTGCTAGAAGATGCGATGGATCAAGAACAGGAACAACACATAGAA
ACGATTTTACGGTTGGCAGATACTTATCGCGGATACCGCATTGATCCTGA
CCGCGCTCTGCTACTTTATGAAATTGCTGCAATTCGTTTTGATTCACCTG
ATGCGAGGTGTGTGCTGCTTGGTTCTTGGATTGGGGGTGTGGTAGGCTTG
CGACCTGACCATGTGCGTATTCTCGATTTCTGCTTGGATGATGCTCGAAA
GACAGGTAACTATTGCTCCGTTGTTACTGCGGCAACAATGATATGGACTG
GGGCAGAACATATACGGAGGGACAGGACGGTCGCCCTTAAGTTTTTGTCT
TCTCATGGACTAAGTGACCATGCCTTTTTTACGTTGTTGTTGAGACGTGA
TTTGAGCTGCTTTCCTGGTGGCCGAAGAAGTGCTCAAAGACTTACAAAGA
GCTATGAGAAGAAAATAGACCGATCTAATTGTGGTCGCGTGGACGCAATC
ATTCTCAGTGAAAACGGTGGTGCGGAAGATAAGGCAGTAGCGATGTCCCA
CTTCCGAGCTCAAAGGGCTAATGAGAGTCTAATCGCTTGGTTGGCTCCTT
TGCTTCGAATGGGCCGTTACAGGATACCCTTCGATGGACATCTAGACTGT
ATCACGGATCCGGTGACAAAATTTGCACGAGGGGAACACATTGCCTCACT
AAATCTCGCTAGCCTCCTACTCGAGATTGAAGGAATGCAACAAGAGGCTG
TGACAATACTGGAAGAATTGATGAACAGCGACTTGAAGTTGATCGCTTCA
CTGAATCTGGCGTATGTTCTGATGAGCGATGTCGAAGGAGTGAAGCAGGA
TCGGAAAAGGGGAATGAAACTTCTGGAAGAGGTAGTGAAGGATACGAATG
ACGTTTCGGCTCGAGCGATGCTAGCTAACGCGTTGTCAGAAAGATCGGAT
TCTGATCGTGGCGCCATTGAGAGGGGATGGGAATTATGGCAAGGCGTAAT
CCGCGCGTTGGAGGATGAGGAGGAGCTACGAAAAGTTGGAAGACTTGTGT
CGGAAATCAGCAAGGAGAGGTGGAGGGAATATTTTCGCCAACAGCCCGAA
GAGATGAGGGAGACTTGCTCATCGAGTGCAACTGGTCTTAATTGCAATGA
AGGATTCAAGCACTAG

Coding sequence (CDS) from alignment at NODE_1898_length_7812_cov_5.919700:1322..3187-

>Gcaud198.t1 ID=Gcaud198.t1|Name=Gcaud198.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1866bp|location=Sequence derived from alignment at NODE_1898_length_7812_cov_5.919700:1322..3187- (Gracilaria caudata M_176_S67 male)
ATGTCCTCCAGCGACATAGACCCGTTCAAGGAAGCGCTAGCCTTAGAGAC
AGAGGTGAAGCTCAACAACGATATCGACGCCATGATTAGGTTGGGTAACC
TGTTGATCACAGACCGCAGACTTGGCTCACAGCAAGCACGAGGCTTCCAA
ATGTTAGAGCGCGCCGTGAAGCAGGGGCATCATCCGTGTGCCATGAACTG
CCTAGCATACCATTTGCTGACCAGTGGCATGACCGAATGTTACTCGCGCG
CCGTTTCACTCCTCGAGCGCTCGGTGAAGCTGCAAGAGAATCCGCTTTTT
ATCAACATGTTGGGGTTGTGTTATCGCATCGGCAAAGGAGTTGCCAAAGA
TGGTGACATTGCGAGACAACTGTTTCAACGAGCTTTGCGACTAAAGCAAG
ATCCTCGGATTATGGGTAACTTGGCGATACAGCTGCTCGAGACGCCCAAG
CTTCATGCACAGACGGAACGCGCCATCGCACTGTATGAGAAGGCTGTTCA
GCTTTCTTCGCACCCCGAAATGATGAACAATTTGGCTCTTATGTATCATA
CTGGAAATGGAAATCTTAAGAGATGTACCAAGAAAGCGGAAAAGTGGTAT
TCGCGCGCCATCAGAAAGCACAGCTATGCGCCATCAATCCGAAAGCTAGC
TATTCTGCTTTTAGAAAATAGTCCCAGTTGCGCAGACATCAGACGAGCCG
TTCAGTTGCTAGAAGATGCGATGGATCAAGAACAGGAACAACACATAGAA
ACGATTTTACGGTTGGCAGATACTTATCGCGGATACCGCATTGATCCTGA
CCGCGCTCTGCTACTTTATGAAATTGCTGCAATTCGTTTTGATTCACCTG
ATGCGAGGTGTGTGCTGCTTGGTTCTTGGATTGGGGGTGTGGTAGGCTTG
CGACCTGACCATGTGCGTATTCTCGATTTCTGCTTGGATGATGCTCGAAA
GACAGGTAACTATTGCTCCGTTGTTACTGCGGCAACAATGATATGGACTG
GGGCAGAACATATACGGAGGGACAGGACGGTCGCCCTTAAGTTTTTGTCT
TCTCATGGACTAAGTGACCATGCCTTTTTTACGTTGTTGTTGAGACGTGA
TTTGAGCTGCTTTCCTGGTGGCCGAAGAAGTGCTCAAAGACTTACAAAGA
GCTATGAGAAGAAAATAGACCGATCTAATTGTGGTCGCGTGGACGCAATC
ATTCTCAGTGAAAACGGTGGTGCGGAAGATAAGGCAGTAGCGATGTCCCA
CTTCCGAGCTCAAAGGGCTAATGAGAGTCTAATCGCTTGGTTGGCTCCTT
TGCTTCGAATGGGCCGTTACAGGATACCCTTCGATGGACATCTAGACTGT
ATCACGGATCCGGTGACAAAATTTGCACGAGGGGAACACATTGCCTCACT
AAATCTCGCTAGCCTCCTACTCGAGATTGAAGGAATGCAACAAGAGGCTG
TGACAATACTGGAAGAATTGATGAACAGCGACTTGAAGTTGATCGCTTCA
CTGAATCTGGCGTATGTTCTGATGAGCGATGTCGAAGGAGTGAAGCAGGA
TCGGAAAAGGGGAATGAAACTTCTGGAAGAGGTAGTGAAGGATACGAATG
ACGTTTCGGCTCGAGCGATGCTAGCTAACGCGTTGTCAGAAAGATCGGAT
TCTGATCGTGGCGCCATTGAGAGGGGATGGGAATTATGGCAAGGCGTAAT
CCGCGCGTTGGAGGATGAGGAGGAGCTACGAAAAGTTGGAAGACTTGTGT
CGGAAATCAGCAAGGAGAGGTGGAGGGAATATTTTCGCCAACAGCCCGAA
GAGATGAGGGAGACTTGCTCATCGAGTGCAACTGGTCTTAATTGCAATGA
AGGATTCAAGCACTAG