Gcaud1924.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1924.t1
Unique NameGcaud1924.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length82
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:17449..17773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706865.1
Preferred nameMINOS1
PFAMsDUF1232,DUF543
Max annot lvl2759|Eukaryota
KEGG koko:K15707,ko:K17784,ko:K19558
KEGG Pathwayko04350,map04350
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006950,GO:0006952,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009792,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032592,GO:0032991,GO:0042407,GO:0042742,GO:0043009,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044284,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0048856,GO:0050896,GO:0051704,GO:0051707,GO:0061024,GO:0061617,GO:0071840,GO:0098542,GO:0098573,GO:0098796,GO:0098798,GO:0098800
Evalue3.21e-07
EggNOG OGsKOG4604@1|root,KOG4604@2759|Eukaryota
EC2.3.2.27
Descriptioncristae formation
COG categoryS
BRITEko00000,ko00001,ko01000,ko03029,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1924Gcaud1924Gracilaria caudata M_176_S67 malegeneNODE_105_length_50300_cov_4.471768 17449..17773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1924.t1Gcaud1924.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_105_length_50300_cov_4.471768 17449..17773 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1924.t1.stop1Gcaud1924.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_105_length_50300_cov_4.471768 17449..17451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1924.t1.CDS1Gcaud1924.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 17449..17579 -
Gcaud1924.t1.CDS2Gcaud1924.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 17659..17773 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1924.t1.exon1Gcaud1924.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 17449..17579 -
Gcaud1924.t1.exon2Gcaud1924.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 17659..17773 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1924.t1.intron1Gcaud1924.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 17580..17658 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1924.t1.start1Gcaud1924.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_105_length_50300_cov_4.471768 17771..17773 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1924.t1 ID=Gcaud1924.t1|Name=Gcaud1924.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=82bp
MTSSELKVAEKWDTALEKGIKRMAYGAIAGGIVAALMFRGVGIRSMIIGV
GTGTGIGITYAEAKRDFEELSPSPAPAKAEI*
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spliced messenger RNA

>Gcaud1924.t1 ID=Gcaud1924.t1|Name=Gcaud1924.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=246bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:17449..17773- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCTAGTGAGCTCAAGGTCGCAGAAAAATGGGACACCGCGCTTGA
AAAGGGCATCAAACGCATGGCCTACGGCGCGATCGCCGGCGGAATCGTCG
CCGCGCTAATGTTTCGTGGTGTGGGAATACGATCGATGATCATCGGAGTG
GGTACTGGCACTGGAATCGGAATTACCTACGCAGAAGCGAAGCGCGACTT
TGAAGAATTATCGCCGAGTCCCGCACCTGCAAAAGCCGAGATCTAG
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protein sequence of Gcaud1924.t1

>Gcaud1924.t1 ID=Gcaud1924.t1|Name=Gcaud1924.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=82bp
MTSSELKVAEKWDTALEKGIKRMAYGAIAGGIVAALMFRGVGIRSMIIGV
GTGTGIGITYAEAKRDFEELSPSPAPAKAEI*
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mRNA from alignment at NODE_105_length_50300_cov_4.471768:17449..17773-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1924.t1 ID=Gcaud1924.t1|Name=Gcaud1924.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=325bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:17449..17773- (Gracilaria caudata M_176_S67 male)
ATGACATCTAGTGAGCTCAAGGTCGCAGAAAAATGGGACACCGCGCTTGA
AAAGGGCATCAAACGCATGGCCTACGGCGCGATCGCCGGCGGAATCGTCG
CCGCGCTAATGTTTCGTACGTTTTCAATTACGCCCAACGCGAGCAAGTAT
GGTGCGCCTCTGATTCGTTTCCACTAACGCGCTTTTTTCTGTAGGTGGTG
TGGGAATACGATCGATGATCATCGGAGTGGGTACTGGCACTGGAATCGGA
ATTACCTACGCAGAAGCGAAGCGCGACTTTGAAGAATTATCGCCGAGTCC
CGCACCTGCAAAAGCCGAGATCTAG
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Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:17449..17773-

>Gcaud1924.t1 ID=Gcaud1924.t1|Name=Gcaud1924.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=246bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:17449..17773- (Gracilaria caudata M_176_S67 male)
ATGACATCTAGTGAGCTCAAGGTCGCAGAAAAATGGGACACCGCGCTTGA
AAAGGGCATCAAACGCATGGCCTACGGCGCGATCGCCGGCGGAATCGTCG
CCGCGCTAATGTTTCGTGGTGTGGGAATACGATCGATGATCATCGGAGTG
GGTACTGGCACTGGAATCGGAATTACCTACGCAGAAGCGAAGCGCGACTT
TGAAGAATTATCGCCGAGTCCCGCACCTGCAAAAGCCGAGATCTAG
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