Gcaud1924.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1924.t1
Unique NameGcaud1924.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length82
Homology
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BLAST of Gcaud1924.t1 vs. uniprot
Match: A0A2V3IPT4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPT4_9FLOR)

HSP 1 Score: 94.7 bits (234), Expect = 7.390e-24
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 
Query:    1 MTSSELKVAEKWDTALEKGIKRMAYGAIAGGIVAALMFRGVGIRSMIIGV 50
            M+SSELKVAEKWDTALEKGIKRMAYGAIAGG+VAALMFRGVGIRSMIIGV
Sbjct:    1 MSSSELKVAEKWDTALEKGIKRMAYGAIAGGVVAALMFRGVGIRSMIIGV 50
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BLAST of Gcaud1924.t1 vs. uniprot
Match: R7Q6G6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6G6_CHOCR)

HSP 1 Score: 87.4 bits (215), Expect = 5.780e-21
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 0 
Query:    1 MTSSELKVAEKWDTALEKGIKRMAYGAIAGGIVAALMFRGVGIRSMIIGV 50
            MT+SELKVAEKWDTALEKGIKR AYGAIAGG+VAAL+FRGVGIRS I+G+
Sbjct:    1 MTTSELKVAEKWDTALEKGIKRTAYGAIAGGVVAALLFRGVGIRSAILGL 50
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BLAST of Gcaud1924.t1 vs. uniprot
Match: A0A0M0JPL0_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JPL0_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 1.140e-6
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 0 
Query:    5 ELKVAEKWDTALEKGIKRMAYGAIAGGIVAALMFRGVGIRSMIIGV 50
            ELKVAE WD  +E  + ++AYG +AGG+ A ++FR    RS I+G+
Sbjct:   10 ELKVAETWDKCIENTVLKLAYGTLAGGLAAMILFRSPSARSSIVGL 55
The following BLAST results are available for this feature:
BLAST of Gcaud1924.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IPT4_9FLOR7.390e-2496.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q6G6_CHOCR5.780e-2186.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A0M0JPL0_9EUKA1.140e-647.83Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007512MICOS complex subunit Mic10PFAMPF04418DUF543coord: 3..67
e-value: 5.7E-16
score: 58.2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..81
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:17449..17773 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1924.t1Gcaud1924.t1Gracilaria caudata M_176_S67 malemRNANODE_105_length_50300_cov_4.471768 17449..17773 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1924.t1 ID=Gcaud1924.t1|Name=Gcaud1924.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=82bp
MTSSELKVAEKWDTALEKGIKRMAYGAIAGGIVAALMFRGVGIRSMIIGV
GTGTGIGITYAEAKRDFEELSPSPAPAKAEI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007512Mic10