Gcaud191.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud191.t1
Unique Name	Gcaud191.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	212

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_658_length_20183_cov_5.262493	contig	NODE_658_length_20183_cov_5.262493:12337..14945 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36331.EPrPI00000024717
Max annot lvl	121069\|Pythiales
Evalue	4.68e-10
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,1ME2R@121069\|Pythiales
Description	function. Source PGD
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud191	Gcaud191	Gracilaria caudata M_176_S67 male	gene	NODE_658_length_20183_cov_5.262493 12337..14945 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud191.t1	Gcaud191.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_658_length_20183_cov_5.262493 12337..14945 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud191.t1.start1	Gcaud191.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_658_length_20183_cov_5.262493 12337..12339 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud191.t1.CDS1	Gcaud191.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_658_length_20183_cov_5.262493 12337..12940 +
Gcaud191.t1.CDS2	Gcaud191.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_658_length_20183_cov_5.262493 14914..14945 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud191.t1.exon1	Gcaud191.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_658_length_20183_cov_5.262493 12337..12940 +
Gcaud191.t1.exon2	Gcaud191.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_658_length_20183_cov_5.262493 14914..14945 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud191.t1.intron1	Gcaud191.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_658_length_20183_cov_5.262493 12941..14913 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud191.t1.stop1	Gcaud191.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_658_length_20183_cov_5.262493 14943..14945 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_658_length_20183_cov_5.262493:12337..14945+
coding sequence from alignment at NODE_658_length_20183_cov_5.262493:12337..14945+

mRNA sequence

>Gcaud191.t1 ID=Gcaud191.t1|Name=Gcaud191.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=212bp
MNCRGPCDLRPVRARPRWANYWSPDHPAATYRRGQRALIKYARNNHGPGG
FIRLSLVPPGRIMHRHTHDRNAFHYSCWGAYPVVAKPWERVRGKFGFSFV
GSDGGLHRFAKGYYQVSVTIPTVVPDGDYVLGWAWYGGTGGKLRSSWRPQ
YPKSMGYFGDYYSCAFVRIRGGPLTRSYAPRFINDMAQFSKIGCMSSTDE
LGIGMEVDSFP*

spliced messenger RNA

>Gcaud191.t1 ID=Gcaud191.t1|Name=Gcaud191.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=636bp|location=Sequence derived from alignment at NODE_658_length_20183_cov_5.262493:12337..14945+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGCCGAGGTCCGTGTGACCTTCGTCCCGTGCGTGCGCGACCTCG
TTGGGCTAACTACTGGTCTCCGGATCATCCGGCCGCCACGTATCGTCGCG
GCCAGCGTGCGCTCATCAAGTATGCGCGCAACAATCATGGACCCGGTGGC
TTTATTCGTCTGAGTTTGGTGCCGCCTGGTCGTATCATGCATCGGCACAC
TCACGATCGCAACGCATTTCATTATAGCTGCTGGGGCGCGTATCCGGTGG
TTGCGAAACCTTGGGAACGGGTTCGTGGTAAGTTTGGCTTCTCGTTTGTG
GGGTCTGATGGAGGTCTGCATCGCTTTGCAAAGGGCTATTACCAGGTGTC
TGTGACCATTCCTACCGTGGTGCCGGACGGTGATTACGTGCTGGGGTGGG
CGTGGTATGGAGGCACGGGTGGTAAGCTACGCAGCTCGTGGCGCCCGCAG
TATCCGAAATCCATGGGGTACTTTGGAGACTACTACTCGTGCGCGTTTGT
GCGAATTCGCGGTGGCCCGCTCACTCGCTCGTACGCGCCACGCTTCATCA
ATGACATGGCGCAGTTCTCGAAGATTGGGTGCATGTCGTCCACGGATGAG
CTGGGCATTGGAATGGAGGTCGACTCTTTCCCCTGA

protein sequence of Gcaud191.t1

>Gcaud191.t1 ID=Gcaud191.t1|Name=Gcaud191.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=212bp
MNCRGPCDLRPVRARPRWANYWSPDHPAATYRRGQRALIKYARNNHGPGG
FIRLSLVPPGRIMHRHTHDRNAFHYSCWGAYPVVAKPWERVRGKFGFSFV
GSDGGLHRFAKGYYQVSVTIPTVVPDGDYVLGWAWYGGTGGKLRSSWRPQ
YPKSMGYFGDYYSCAFVRIRGGPLTRSYAPRFINDMAQFSKIGCMSSTDE
LGIGMEVDSFP*

mRNA from alignment at NODE_658_length_20183_cov_5.262493:12337..14945+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud191.t1 ID=Gcaud191.t1|Name=Gcaud191.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2609bp|location=Sequence derived from alignment at NODE_658_length_20183_cov_5.262493:12337..14945+ (Gracilaria caudata M_176_S67 male)
ATGAACTGCCGAGGTCCGTGTGACCTTCGTCCCGTGCGTGCGCGACCTCG
TTGGGCTAACTACTGGTCTCCGGATCATCCGGCCGCCACGTATCGTCGCG
GCCAGCGTGCGCTCATCAAGTATGCGCGCAACAATCATGGACCCGGTGGC
TTTATTCGTCTGAGTTTGGTGCCGCCTGGTCGTATCATGCATCGGCACAC
TCACGATCGCAACGCATTTCATTATAGCTGCTGGGGCGCGTATCCGGTGG
TTGCGAAACCTTGGGAACGGGTTCGTGGTAAGTTTGGCTTCTCGTTTGTG
GGGTCTGATGGAGGTCTGCATCGCTTTGCAAAGGGCTATTACCAGGTGTC
TGTGACCATTCCTACCGTGGTGCCGGACGGTGATTACGTGCTGGGGTGGG
CGTGGTATGGAGGCACGGGTGGTAAGCTACGCAGCTCGTGGCGCCCGCAG
TATCCGAAATCCATGGGGTACTTTGGAGACTACTACTCGTGCGCGTTTGT
GCGAATTCGCGGTGGCCCGCTCACTCGCTCGTACGCGCCACGCTTCATCA
ATGACATGGCGCAGTTCTCGAAGATTGGGTGCATGTCGTCCACGGATGAG
CTGGGTGAGTGTGCGCGAGAGCCGTGTATTAAGAAGGCGTGGTTCCGTCG
TCCCAAGCCGTTCAGTGGCGGCAAACGGCCGCCGCCACTCACGCGTAGCT
TGTTTGTGGAACGTAGCGCGAAATCAAGTCGGAAGACTTCGCAGTTTTGG
CGCCGGACGTTGGGCGCGTGCAAGTGCCTGGCGCGTGGTCGGAAGTGCCG
ACTGCCGTTGGTGAGGGACACCAACTGGAAATGTCGCCCGTGGACGCGCC
CCACGGCGCAGCCGGCCAAGTGTAAGAGCATGTGTTGCGGCATGTGCAAG
AACCACCGTCATGTGCGAGACGTGTGCTGGGGGCAGAGCGTTCGGAGGTT
GTGCGGGTACTAGACCACATCCTCGTCGTGTTCGCTTCTTTTTTGTTAGT
TTTGTGAGCTCCACCCGCGAGAAGTTCGAGCTCGTGGAATGCGTGCTAGA
TGGAGAATGTACACAAAAGTGTTGTACCGAACACTCAACATGTTGTAAAA
GTCCACCGCAATCCGGGGGTAGTCGGCGAACACGAAGCTTCAGCCGTAAC
TACCGTAGATACTCGCCCGTGAAGCGCAGCGCTCAAGCTCATGGCGCGCT
GTTGCCGTCGGTGCGGCACGCTGCTGACACCACTTCCGAAGCAACACAGC
TTGCTCGGTGGTGTGCGTGGCTGCCGATTGCAAGTTACCAACCAACTCGT
CTCTGGTCAGGGTTAAAAGCTCAAGCGATGCACTGTTAACCCTTTTCTCC
CACGCCCATGTAACACATCATTGACTGAATGCCCTCAACCTCTCAGAAGC
CATCCGTTCATTCCCCATGCGCACGCAACCGCACATAGCAATCCCGCACC
TTCCACGCACAATAATGTGCTGCTCTTGCGCACGTCATCATCTTTACCTG
TAAACCATGCATTCCGAAAAAGCACCTTTGCGAAAACCTCAGCCATCTAA
TTCTGCGAGAATGGCAACAACCTCGCCAAGCACTTTACACTTTGACGAAA
GGGTTAAGCTGTTGAGCAGTTGAGCAGTTGAGGGGTTGCTCGGCCGGCTG
CTGGCCATTTGCACACCCATCCAGAATTTCCGCAACCATCCGAAGTCTGA
GCCCCCCTCATCTAGAGCAATTCAACACGTGCACCAAAGCAATCTTCAAG
GCCACCAATCACTTCTGCTTCTCCTCATCTCTGTAAGCGAGACATCCAAT
CAGCCGTTGACAATATCTACTCATCCACCAGCTCTTCTTCCTCTCCCGAA
AAATCTGTGAACGCCCTACGCTTGCAATGCTATTCTGATTCTCATACCAT
TCCTTTCCGCCATTTGATGACTCGTTGTTGCCAGCACGCGTTTGTGCGCG
TGAAGTGCGCCGGTTGTTTTCCCCACAACACAATATCCATCCACTGAAGT
GTTTGCTTGTCCTAAACTCAACACGCGCATCATTGTTGGTCGTCGGAGCC
ATAACGACCCTTTGCTCTTGCTCTACGTTTTTACATTCGGGCAATTTACT
CGCACCGCCCGCACCTCGAGCTGCGCATTGGACGCCCTTCGTCGATTCCC
CATCGCCACTACCAATGGCCTCTCTCTTCATCAGAGAAGGTCGCCCTCGT
GACACCTCTCGGTCTCCATCATACTGCCTTGACAACCTCGGCACACCACT
ATGATGTTCGTCCGTTTTGCATTGGCCGACTGCTTCGTTCTCGATATGTT
TGTGATTGCGTCTCGTGAAGCCTTTGAGCCGACTCATCGAGTTGAAACAC
ATCACGCGAAGGCGTTCTCGTCTTCGCCACGTACCTGACGGTGATTCTCC
GTCTGAAAACCTCAGGCTGCGAAAGTCGTCTCCCTCTATGAACGACCCAC
TTGAGAGAGAAGTTCTGTAGTAAACGGTGCTCATGCGTGGTGTGCTTTGT
TCGAGCAGATGTGATAGCGTGCGAAGCAGGTGGGAGAAGTGAACACACTT
GAGAATGTGTTGCTGTTTTATTTATAGGCATTGGAATGGAGGTCGACTCT
TTCCCCTGA

Coding sequence (CDS) from alignment at NODE_658_length_20183_cov_5.262493:12337..14945+

>Gcaud191.t1 ID=Gcaud191.t1|Name=Gcaud191.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=636bp|location=Sequence derived from alignment at NODE_658_length_20183_cov_5.262493:12337..14945+ (Gracilaria caudata M_176_S67 male)
ATGAACTGCCGAGGTCCGTGTGACCTTCGTCCCGTGCGTGCGCGACCTCG
TTGGGCTAACTACTGGTCTCCGGATCATCCGGCCGCCACGTATCGTCGCG
GCCAGCGTGCGCTCATCAAGTATGCGCGCAACAATCATGGACCCGGTGGC
TTTATTCGTCTGAGTTTGGTGCCGCCTGGTCGTATCATGCATCGGCACAC
TCACGATCGCAACGCATTTCATTATAGCTGCTGGGGCGCGTATCCGGTGG
TTGCGAAACCTTGGGAACGGGTTCGTGGTAAGTTTGGCTTCTCGTTTGTG
GGGTCTGATGGAGGTCTGCATCGCTTTGCAAAGGGCTATTACCAGGTGTC
TGTGACCATTCCTACCGTGGTGCCGGACGGTGATTACGTGCTGGGGTGGG
CGTGGTATGGAGGCACGGGTGGTAAGCTACGCAGCTCGTGGCGCCCGCAG
TATCCGAAATCCATGGGGTACTTTGGAGACTACTACTCGTGCGCGTTTGT
GCGAATTCGCGGTGGCCCGCTCACTCGCTCGTACGCGCCACGCTTCATCA
ATGACATGGCGCAGTTCTCGAAGATTGGGTGCATGTCGTCCACGGATGAG
CTGGGCATTGGAATGGAGGTCGACTCTTTCCCCTGA