Gcaud1878.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1878.t1
Unique Name	Gcaud1878.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	345

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_238_length_34707_cov_4.869829	contig	NODE_238_length_34707_cov_4.869829:9188..10222 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42345.XP_008797003.1
PFAMs	Homeobox_KN,POX
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0003700,GO:0006355,GO:0007275,GO:0008150,GO:0009653,GO:0009889,GO:0009965,GO:0010016,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0099402,GO:0140110,GO:1903506,GO:1905392,GO:2000112,GO:2001141
Evalue	4.18e-12
EggNOG OGs	KOG0773@1\|root,KOG0773@2759\|Eukaryota,37QJV@33090\|Viridiplantae,3GB2T@35493\|Streptophyta,3KR9Z@4447\|Liliopsida
Description	homeodomain protein
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1878	Gcaud1878	Gracilaria caudata M_176_S67 male	gene	NODE_238_length_34707_cov_4.869829 9188..10222 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1878.t1.stop1	Gcaud1878.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_238_length_34707_cov_4.869829 9188..9190 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1878.t1.CDS1	Gcaud1878.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 9188..10222 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1878.t1.exon1	Gcaud1878.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 9188..10222 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1878.t1.start1	Gcaud1878.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_238_length_34707_cov_4.869829 10220..10222 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1878.t1	Gcaud1878.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_238_length_34707_cov_4.869829 9188..10222 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_238_length_34707_cov_4.869829:9188..10222-
coding sequence from alignment at NODE_238_length_34707_cov_4.869829:9188..10222-

mRNA sequence

>Gcaud1878.t1 ID=Gcaud1878.t1|Name=Gcaud1878.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=345bp
MANDCPSEDIERSSRYFRKHGIFFGSSVGDRWERNRAENRNPNQVLNANN
LDQHLRYVRTPPELSKRIFVLEKKVVHSKKIGNCGSSHPICSLSVEAVKS
NLEHESPWLPNGNVIYELGYPKQDNDIHEYFVDCQGLSARSVDVLKTELL
RHLHETRDKVETSAIEMQLILLRQSRFRVVSDDEIMESVAFVVQSFISAR
IQMVEKFRVYVRTWRWIENINNRRRKGFLSNRQNNILRLWLFSNFHDPYP
SSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERICTEGKRKLILSS
ISSGSEQKRRRISLERCQTQAQGAQKLSVSRPHRSIPQEGKQSP*

spliced messenger RNA

>Gcaud1878.t1 ID=Gcaud1878.t1|Name=Gcaud1878.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:9188..10222- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACGATTGTCCGTCTGAGGATATTGAGAGAAGTTCACGGTACTT
CAGAAAGCACGGAATATTCTTTGGAAGTTCTGTTGGGGACCGATGGGAAC
GGAACCGCGCTGAAAATCGCAATCCAAACCAAGTTCTGAATGCTAATAAT
CTCGATCAACACTTGCGCTACGTGAGAACGCCGCCAGAACTTTCGAAACG
CATTTTTGTTCTTGAAAAGAAAGTAGTGCATTCGAAGAAGATTGGCAATT
GTGGTTCTAGTCATCCTATTTGCTCCCTTTCCGTAGAGGCAGTGAAAAGC
AATCTTGAACATGAATCTCCCTGGCTTCCAAATGGGAACGTCATTTATGA
ACTGGGATATCCAAAACAGGACAACGATATCCACGAATACTTTGTTGACT
GTCAGGGGTTGTCAGCGAGAAGCGTTGATGTACTCAAGACTGAGCTTCTC
AGACATCTTCACGAAACGCGAGATAAAGTTGAAACCAGTGCTATTGAAAT
GCAGCTCATTCTACTTCGACAGTCTCGATTTCGAGTGGTGTCCGATGATG
AGATAATGGAAAGTGTTGCTTTCGTTGTTCAAAGTTTTATTTCTGCAAGG
ATCCAGATGGTGGAAAAGTTTCGCGTTTACGTTCGCACTTGGCGATGGAT
TGAAAATATCAACAATCGGCGACGGAAAGGGTTTCTGTCCAATCGACAGA
ATAATATCCTTCGCCTCTGGTTGTTTTCAAACTTTCATGACCCGTATCCA
AGTTCGGAGGACAAGAAGAAGCTTACATTTGAGACGAAGTTAGACATGAA
TCAGATAAACAATTGGCTCATAAATGCGAGAAGTCGCATATGGAAACCAA
CCGTGGAACGTATTTGCACCGAAGGCAAGCGAAAGTTGATACTGTCGTCT
ATTTCTTCTGGTTCGGAGCAGAAACGCCGTAGGATCAGTCTGGAAAGATG
TCAGACTCAAGCGCAGGGTGCCCAAAAGTTATCAGTTTCTCGTCCTCATC
GCTCAATTCCGCAGGAAGGAAAACAATCCCCGTGA

protein sequence of Gcaud1878.t1

>Gcaud1878.t1 ID=Gcaud1878.t1|Name=Gcaud1878.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=345bp
MANDCPSEDIERSSRYFRKHGIFFGSSVGDRWERNRAENRNPNQVLNANN
LDQHLRYVRTPPELSKRIFVLEKKVVHSKKIGNCGSSHPICSLSVEAVKS
NLEHESPWLPNGNVIYELGYPKQDNDIHEYFVDCQGLSARSVDVLKTELL
RHLHETRDKVETSAIEMQLILLRQSRFRVVSDDEIMESVAFVVQSFISAR
IQMVEKFRVYVRTWRWIENINNRRRKGFLSNRQNNILRLWLFSNFHDPYP
SSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERICTEGKRKLILSS
ISSGSEQKRRRISLERCQTQAQGAQKLSVSRPHRSIPQEGKQSP*

mRNA from alignment at NODE_238_length_34707_cov_4.869829:9188..10222-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1878.t1 ID=Gcaud1878.t1|Name=Gcaud1878.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:9188..10222- (Gracilaria caudata M_176_S67 male)
ATGGCAAACGATTGTCCGTCTGAGGATATTGAGAGAAGTTCACGGTACTT
CAGAAAGCACGGAATATTCTTTGGAAGTTCTGTTGGGGACCGATGGGAAC
GGAACCGCGCTGAAAATCGCAATCCAAACCAAGTTCTGAATGCTAATAAT
CTCGATCAACACTTGCGCTACGTGAGAACGCCGCCAGAACTTTCGAAACG
CATTTTTGTTCTTGAAAAGAAAGTAGTGCATTCGAAGAAGATTGGCAATT
GTGGTTCTAGTCATCCTATTTGCTCCCTTTCCGTAGAGGCAGTGAAAAGC
AATCTTGAACATGAATCTCCCTGGCTTCCAAATGGGAACGTCATTTATGA
ACTGGGATATCCAAAACAGGACAACGATATCCACGAATACTTTGTTGACT
GTCAGGGGTTGTCAGCGAGAAGCGTTGATGTACTCAAGACTGAGCTTCTC
AGACATCTTCACGAAACGCGAGATAAAGTTGAAACCAGTGCTATTGAAAT
GCAGCTCATTCTACTTCGACAGTCTCGATTTCGAGTGGTGTCCGATGATG
AGATAATGGAAAGTGTTGCTTTCGTTGTTCAAAGTTTTATTTCTGCAAGG
ATCCAGATGGTGGAAAAGTTTCGCGTTTACGTTCGCACTTGGCGATGGAT
TGAAAATATCAACAATCGGCGACGGAAAGGGTTTCTGTCCAATCGACAGA
ATAATATCCTTCGCCTCTGGTTGTTTTCAAACTTTCATGACCCGTATCCA
AGTTCGGAGGACAAGAAGAAGCTTACATTTGAGACGAAGTTAGACATGAA
TCAGATAAACAATTGGCTCATAAATGCGAGAAGTCGCATATGGAAACCAA
CCGTGGAACGTATTTGCACCGAAGGCAAGCGAAAGTTGATACTGTCGTCT
ATTTCTTCTGGTTCGGAGCAGAAACGCCGTAGGATCAGTCTGGAAAGATG
TCAGACTCAAGCGCAGGGTGCCCAAAAGTTATCAGTTTCTCGTCCTCATC
GCTCAATTCCGCAGGAAGGAAAACAATCCCCGTGA

Coding sequence (CDS) from alignment at NODE_238_length_34707_cov_4.869829:9188..10222-

>Gcaud1878.t1 ID=Gcaud1878.t1|Name=Gcaud1878.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1035bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:9188..10222- (Gracilaria caudata M_176_S67 male)
ATGGCAAACGATTGTCCGTCTGAGGATATTGAGAGAAGTTCACGGTACTT
CAGAAAGCACGGAATATTCTTTGGAAGTTCTGTTGGGGACCGATGGGAAC
GGAACCGCGCTGAAAATCGCAATCCAAACCAAGTTCTGAATGCTAATAAT
CTCGATCAACACTTGCGCTACGTGAGAACGCCGCCAGAACTTTCGAAACG
CATTTTTGTTCTTGAAAAGAAAGTAGTGCATTCGAAGAAGATTGGCAATT
GTGGTTCTAGTCATCCTATTTGCTCCCTTTCCGTAGAGGCAGTGAAAAGC
AATCTTGAACATGAATCTCCCTGGCTTCCAAATGGGAACGTCATTTATGA
ACTGGGATATCCAAAACAGGACAACGATATCCACGAATACTTTGTTGACT
GTCAGGGGTTGTCAGCGAGAAGCGTTGATGTACTCAAGACTGAGCTTCTC
AGACATCTTCACGAAACGCGAGATAAAGTTGAAACCAGTGCTATTGAAAT
GCAGCTCATTCTACTTCGACAGTCTCGATTTCGAGTGGTGTCCGATGATG
AGATAATGGAAAGTGTTGCTTTCGTTGTTCAAAGTTTTATTTCTGCAAGG
ATCCAGATGGTGGAAAAGTTTCGCGTTTACGTTCGCACTTGGCGATGGAT
TGAAAATATCAACAATCGGCGACGGAAAGGGTTTCTGTCCAATCGACAGA
ATAATATCCTTCGCCTCTGGTTGTTTTCAAACTTTCATGACCCGTATCCA
AGTTCGGAGGACAAGAAGAAGCTTACATTTGAGACGAAGTTAGACATGAA
TCAGATAAACAATTGGCTCATAAATGCGAGAAGTCGCATATGGAAACCAA
CCGTGGAACGTATTTGCACCGAAGGCAAGCGAAAGTTGATACTGTCGTCT
ATTTCTTCTGGTTCGGAGCAGAAACGCCGTAGGATCAGTCTGGAAAGATG
TCAGACTCAAGCGCAGGGTGCCCAAAAGTTATCAGTTTCTCGTCCTCATC
GCTCAATTCCGCAGGAAGGAAAACAATCCCCGTGA