Gcaud1878.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1878.t1
Unique NameGcaud1878.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length345
Homology
BLAST of Gcaud1878.t1 vs. uniprot
Match: R7QSF0_CHOCR (Homeobox domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSF0_CHOCR)

HSP 1 Score: 159 bits (402), Expect = 3.280e-41
Identity = 79/173 (45.66%), Postives = 111/173 (64.16%), Query Frame = 0
Query:  114 VIYELGYPKQDNDIHEYFVDCQGLSARSVDVLKTELLRHLHETRDKVETSAIEMQLILLRQSRFRVVSDDEIMESVAFVVQSFISARIQMVEKFRVYVRTWRWIENINNRRRKGFLSNRQNNILRLWLFSNFHDPYPSSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVE 286
            VIY  G+PK D D+     D  GLS  +   LK  L+  L   R   + +  EM+  L +Q  FR+V  +E+   + ++V  F   R +++ K+R YVR  RWIENI  R+R+G L++RQNNILRLWLF++F +PYP   +K++L  ET+L   Q+NNWLINARSR+WKPTV+
Sbjct:  197 VIY-YGFPKSDEDVEYCLEDTPGLSEHNFVALKNSLMESLANVRHMAQDAVAEMETNLAQQLHFRIVPPEEVHNRLRYIVSRFSKTRKEILHKYRGYVRNRRWIENIATRQRRGCLTHRQNNILRLWLFTHFSNPYPDVHEKRQLMRETELSATQVNNWLINARSRVWKPTVD 368          
BLAST of Gcaud1878.t1 vs. uniprot
Match: A0A5J4YQU0_PORPP (BEL1-like homeodomain protein 8 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQU0_PORPP)

HSP 1 Score: 87.8 bits (216), Expect = 4.710e-16
Identity = 64/206 (31.07%), Postives = 97/206 (47.09%), Query Frame = 0
Query:   96 EAVKSNLEHESPWLPNGNVIYELGYPKQDNDIHEYFVDCQGLSARSVDVL-----------KTELLRHLHETRDKVETSAIEMQLILLRQSRFRVVSDDEIMESVAFVVQSFISARIQMVEKFRVYVRTWR-WIENINNRRRKGFLSNRQNNILRLWLFSNFHDPYPSSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERIC 289
            E V S    E    P  N I  + +P++D+DI     +   L +   D L              L+  L   R + E  +  +   LL QS+FR+V+ +EI+E  A +VQ F+ AR ++VE    Y    R W  N+ +           N +LR+W F N   PYP+  +K++L  +T L   Q+++W IN R R WKP V+  C
Sbjct:   75 ETVGSRTPMEPVSAPTKNNI--ISFPERDDDIIARIEEKAKLQSPQEDTLGLFQKMYGDELMNSLIERLQMMRQRCELLSAGVVEELLLQSKFRLVTPEEILERRARIVQLFLDARNRLVENVLEYANAARAW--NVQSIVSGDNTEIDVNFVLRMWFFDNILKPYPTRSEKRRLAQQTGLSTVQVSHWFINMRMRFWKPLVQVFC 276          
BLAST of Gcaud1878.t1 vs. uniprot
Match: A0A5B8ZR26_NEOYE (TALE homeodomain protein BELL1 (Fragment) n=1 Tax=Neopyropia yezoensis TaxID=2788 RepID=A0A5B8ZR26_NEOYE)

HSP 1 Score: 79.7 bits (195), Expect = 5.390e-15
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 0
Query:  225 RKGFLSNRQNNILRLWLFSNFHDPYPSSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERICTEG 292
            R+G LS R N  LRLWLF +F  PYPS  DK +L     L + Q+NNW INAR R+WKPTV+ + T G
Sbjct:   19 RRGALSARANCYLRLWLFDHFLSPYPSEADKARLAARAGLSLVQVNNWFINARVRLWKPTVDALHTGG 86          
BLAST of Gcaud1878.t1 vs. uniprot
Match: A0A0V0H567_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H567_SOLCH)

HSP 1 Score: 71.6 bits (174), Expect = 2.320e-11
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 0
Query:  219 NINNRRRKGFLSNRQN-------------NILRLWLFSNFHDPYPSSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERI 288
            N NN +R GF+ + Q               +LR WLF +F  PYP+  DK  L  +T L  NQ++NW INAR R+WKP VE I
Sbjct:   33 NCNNFQRTGFVEHHQPVWRPQRGLPERAVTVLRAWLFDHFLHPYPTDSDKVMLAKQTGLSRNQVSNWFINARVRLWKPMVEEI 115          
BLAST of Gcaud1878.t1 vs. uniprot
Match: UPI000B8CA8FA (LOW QUALITY PROTEIN: BEL1-like homeodomain protein 4 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CA8FA)

HSP 1 Score: 75.5 bits (184), Expect = 2.890e-11
Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 0
Query:  229 LSNRQNNILRLWLFSNFHDPYPSSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERICTE 291
            L  R  NILR WLF +F  PYPS  DK  L  +T L  NQ++NW INAR R+WKP VE+  TE
Sbjct:  491 LPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEKCTTE 553          
BLAST of Gcaud1878.t1 vs. uniprot
Match: A0A8B7CDL9_PHODC (BEL1-like homeodomain protein 4 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7CDL9_PHODC)

HSP 1 Score: 75.1 bits (183), Expect = 3.300e-11
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:  229 LSNRQNNILRLWLFSNFHDPYPSSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERI 288
            L  R  NILR WLF +F  PYPS  DK++L  +T L  NQ++NW INAR R+WKP VE I
Sbjct:  360 LPERSVNILRAWLFEHFLHPYPSDADKQQLARQTGLSRNQVSNWFINARVRLWKPMVEEI 419          
BLAST of Gcaud1878.t1 vs. uniprot
Match: A0A6J0PSK8_ELAGV (BEL1-like homeodomain protein 4 n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6J0PSK8_ELAGV)

HSP 1 Score: 74.7 bits (182), Expect = 4.500e-11
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 0
Query:  229 LSNRQNNILRLWLFSNFHDPYPSSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERI 288
            L  R  N+LR WLF +F  PYPS  DK++L  +T L  NQ++NW INAR R+WKP VE I
Sbjct:  377 LPERSVNVLRAWLFEHFLHPYPSDADKQQLAKQTGLSRNQVSNWFINARVRLWKPMVEEI 436          
BLAST of Gcaud1878.t1 vs. uniprot
Match: A0A5A7RF99_STRAF (BEL1-like homeodomain protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7RF99_STRAF)

HSP 1 Score: 73.6 bits (179), Expect = 5.130e-11
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0
Query:  236 ILRLWLFSNFHDPYPSSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERICTEGKRKLILSSISSGSEQ 307
            +LR WLF +F  PYP+  DK  L  +T L  NQ++NW INAR R+WKP VE I T   R+   +S SS SEQ
Sbjct:  122 VLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHTLETRQQGQNSSSSKSEQ 193          
BLAST of Gcaud1878.t1 vs. uniprot
Match: S8C5G7_9LAMI (Homeobox domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C5G7_9LAMI)

HSP 1 Score: 71.2 bits (173), Expect = 5.580e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0
Query:  229 LSNRQNNILRLWLFSNFHDPYPSSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERI 288
            L  R  N+LR WLF +F  PYPS  DK  L+ +T L  NQ++NW INAR R+WKP VE +
Sbjct:  128 LPERSVNLLRSWLFEHFLHPYPSEADKHLLSRQTGLSKNQVSNWFINARVRLWKPMVEEM 187          
BLAST of Gcaud1878.t1 vs. uniprot
Match: A0A164U918_DAUCS (Homeobox domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164U918_DAUCS)

HSP 1 Score: 72.4 bits (176), Expect = 6.130e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 0
Query:  229 LSNRQNNILRLWLFSNFHDPYPSSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVE 286
            L  R  NILR WLF +F  PYPS  DK+ L  +T L  NQ++NW INAR R+WKP VE
Sbjct:   90 LPERSVNILRAWLFEHFLHPYPSDADKQLLARQTGLSRNQVSNWFINARVRLWKPMVE 147          
The following BLAST results are available for this feature:
BLAST of Gcaud1878.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QSF0_CHOCR3.280e-4145.66Homeobox domain-containing protein n=1 Tax=Chondru... [more]
A0A5J4YQU0_PORPP4.710e-1631.07BEL1-like homeodomain protein 8 n=1 Tax=Porphyridi... [more]
A0A5B8ZR26_NEOYE5.390e-1554.41TALE homeodomain protein BELL1 (Fragment) n=1 Tax=... [more]
A0A0V0H567_SOLCH2.320e-1143.37Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
UPI000B8CA8FA2.890e-1155.56LOW QUALITY PROTEIN: BEL1-like homeodomain protein... [more]
A0A8B7CDL9_PHODC3.300e-1156.67BEL1-like homeodomain protein 4 n=1 Tax=Phoenix da... [more]
A0A6J0PSK8_ELAGV4.500e-1155.00BEL1-like homeodomain protein 4 n=1 Tax=Elaeis gui... [more]
A0A5A7RF99_STRAF5.130e-1151.39BEL1-like homeodomain protein n=1 Tax=Striga asiat... [more]
S8C5G7_9LAMI5.580e-1153.33Homeobox domain-containing protein (Fragment) n=1 ... [more]
A0A164U918_DAUCS6.130e-1156.90Homeobox domain-containing protein n=1 Tax=Daucus ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 222..287
e-value: 4.8E-6
score: 36.1
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 220..283
score: 11.272352
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 223..283
e-value: 3.40003E-7
score: 44.9269
NoneNo IPR availableGENE3D1.10.10.60coord: 218..293
e-value: 3.4E-22
score: 79.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 316..344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 309..344
NoneNo IPR availablePANTHERPTHR11850:SF57HOMEOBOX PROTEIN 9coord: 179..306
NoneNo IPR availablePANTHERPTHR11850HOMEOBOX PROTEIN TRANSCRIPTION FACTORScoord: 179..306
IPR008422Homeobox KN domainPFAMPF05920Homeobox_KNcoord: 240..279
e-value: 8.0E-16
score: 57.7
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 222..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_238_length_34707_cov_4.869829contigNODE_238_length_34707_cov_4.869829:9188..10222 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1878.t1Gcaud1878.t1Gracilaria caudata M_176_S67 malemRNANODE_238_length_34707_cov_4.869829 9188..10222 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1878.t1 ID=Gcaud1878.t1|Name=Gcaud1878.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=345bp
MANDCPSEDIERSSRYFRKHGIFFGSSVGDRWERNRAENRNPNQVLNANN
LDQHLRYVRTPPELSKRIFVLEKKVVHSKKIGNCGSSHPICSLSVEAVKS
NLEHESPWLPNGNVIYELGYPKQDNDIHEYFVDCQGLSARSVDVLKTELL
RHLHETRDKVETSAIEMQLILLRQSRFRVVSDDEIMESVAFVVQSFISAR
IQMVEKFRVYVRTWRWIENINNRRRKGFLSNRQNNILRLWLFSNFHDPYP
SSEDKKKLTFETKLDMNQINNWLINARSRIWKPTVERICTEGKRKLILSS
ISSGSEQKRRRISLERCQTQAQGAQKLSVSRPHRSIPQEGKQSP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR008422Homeobox_KN_domain
IPR009057Homeobox-like_sf