Gcaud1789.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1789.t1
Unique NameGcaud1789.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_472_length_24489_cov_3.453562contigNODE_472_length_24489_cov_3.453562:10583..11215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G189
Preferred nameH1
PFAMsLinker_histone
Max annot lvl2759|Eukaryota
KEGG koko:K11275
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
Evalue2e-10
EggNOG OGs2CYYI@1|root,2S79K@2759|Eukaryota
DescriptionDomain in histone families 1 and 5
COG categoryB
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1789Gcaud1789Gracilaria caudata M_176_S67 malegeneNODE_472_length_24489_cov_3.453562 10583..11215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1789.t1Gcaud1789.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_472_length_24489_cov_3.453562 10583..11215 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1789.t1.stop1Gcaud1789.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_472_length_24489_cov_3.453562 10583..10585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1789.t1.CDS1Gcaud1789.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_472_length_24489_cov_3.453562 10583..10783 -
Gcaud1789.t1.CDS2Gcaud1789.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_472_length_24489_cov_3.453562 10892..11215 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1789.t1.exon1Gcaud1789.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_472_length_24489_cov_3.453562 10583..10783 -
Gcaud1789.t1.exon2Gcaud1789.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_472_length_24489_cov_3.453562 10892..11215 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1789.t1.intron1Gcaud1789.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_472_length_24489_cov_3.453562 10784..10891 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1789.t1.start1Gcaud1789.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_472_length_24489_cov_3.453562 11213..11215 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1789.t1 ID=Gcaud1789.t1|Name=Gcaud1789.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=175bp
MPATKKTVVSKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNIDINK
PALIKAIKKGVEMGDFVQIRASYKLAKKGSTVPKKKTTVAVKPKSTAKST
ATAAPKKKISASAAKKALKPKKTLTKTKTRTRSVTSSTTTTTTATKKRTT
KRSAAARKDASKMAATSKKRAAKK*
back to top

spliced messenger RNA

>Gcaud1789.t1 ID=Gcaud1789.t1|Name=Gcaud1789.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=525bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:10583..11215- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCCACAAAGAAGACGGTGGTGTCCAAGCCCACTTATGCAGTCAT
GGTCACGGAGAGCATAAAGGAGCTGGGCGACCGCACCGGTTCGTCTGTTC
AGGCTATCACCAAGCAGTTGAGGGCAAAGTACAACATTGATATCAACAAG
CCCGCCCTCATCAAGGCCATCAAGAAGGGCGTTGAAATGGGCGACTTTGT
TCAGATAAGGGCCAGCTACAAACTGGCTAAGAAGGGCTCTACCGTCCCCA
AGAAGAAGACTACTGTCGCTGTCAAGCCGAAGAGCACCGCCAAGAGTACT
GCTACCGCTGCCCCCAAGAAGAAGATAAGTGCATCGGCTGCCAAGAAGGC
TCTCAAACCCAAGAAGACTTTGACCAAGACAAAGACTCGCACGCGCAGCG
TGACGAGCTCCACCACCACCACCACCACAGCCACCAAGAAGAGGACTACC
AAGAGGAGCGCCGCCGCCAGGAAGGATGCTTCCAAGATGGCCGCCACCAG
CAAGAAAAGAGCCGCCAAGAAATAA
back to top

protein sequence of Gcaud1789.t1

>Gcaud1789.t1 ID=Gcaud1789.t1|Name=Gcaud1789.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=175bp
MPATKKTVVSKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNIDINK
PALIKAIKKGVEMGDFVQIRASYKLAKKGSTVPKKKTTVAVKPKSTAKST
ATAAPKKKISASAAKKALKPKKTLTKTKTRTRSVTSSTTTTTTATKKRTT
KRSAAARKDASKMAATSKKRAAKK*
back to top

mRNA from alignment at NODE_472_length_24489_cov_3.453562:10583..11215-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1789.t1 ID=Gcaud1789.t1|Name=Gcaud1789.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=633bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:10583..11215- (Gracilaria caudata M_176_S67 male)
ATGCCCGCCACAAAGAAGACGGTGGTGTCCAAGCCCACTTATGCAGTCAT
GGTCACGGAGAGCATAAAGGAGCTGGGCGACCGCACCGGTTCGTCTGTTC
AGGCTATCACCAAGCAGTTGAGGGCAAAGTACAACATTGATATCAACAAG
CCCGCCCTCATCAAGGCCATCAAGAAGGGCGTTGAAATGGGCGACTTTGT
TCAGATAAGGGCCAGCTACAAACTGGCTAAGAAGGGCTCTACCGTCCCCA
AGAAGAAGACTACTGTCGCTGTCAAGCCGAAGAGCACCGCCAAGAGTACT
GCTACCGCTGCCCCCAAGAAGAAGGTTCGTCATCACACACTCCACTGTTT
TTTTTTTATTTTGTCTTCCACTCTTGCTCAAGTCTTCCCCACTAACACTC
TCTCTCGCTGTGTCGTGTGCGCAAATGTGCAGATAAGTGCATCGGCTGCC
AAGAAGGCTCTCAAACCCAAGAAGACTTTGACCAAGACAAAGACTCGCAC
GCGCAGCGTGACGAGCTCCACCACCACCACCACCACAGCCACCAAGAAGA
GGACTACCAAGAGGAGCGCCGCCGCCAGGAAGGATGCTTCCAAGATGGCC
GCCACCAGCAAGAAAAGAGCCGCCAAGAAATAA
back to top

Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:10583..11215-

>Gcaud1789.t1 ID=Gcaud1789.t1|Name=Gcaud1789.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=525bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:10583..11215- (Gracilaria caudata M_176_S67 male)
ATGCCCGCCACAAAGAAGACGGTGGTGTCCAAGCCCACTTATGCAGTCAT
GGTCACGGAGAGCATAAAGGAGCTGGGCGACCGCACCGGTTCGTCTGTTC
AGGCTATCACCAAGCAGTTGAGGGCAAAGTACAACATTGATATCAACAAG
CCCGCCCTCATCAAGGCCATCAAGAAGGGCGTTGAAATGGGCGACTTTGT
TCAGATAAGGGCCAGCTACAAACTGGCTAAGAAGGGCTCTACCGTCCCCA
AGAAGAAGACTACTGTCGCTGTCAAGCCGAAGAGCACCGCCAAGAGTACT
GCTACCGCTGCCCCCAAGAAGAAGATAAGTGCATCGGCTGCCAAGAAGGC
TCTCAAACCCAAGAAGACTTTGACCAAGACAAAGACTCGCACGCGCAGCG
TGACGAGCTCCACCACCACCACCACCACAGCCACCAAGAAGAGGACTACC
AAGAGGAGCGCCGCCGCCAGGAAGGATGCTTCCAAGATGGCCGCCACCAG
CAAGAAAAGAGCCGCCAAGAAATAA
back to top