Gcaud1789.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1789.t1
Unique NameGcaud1789.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length175
Homology
BLAST of Gcaud1789.t1 vs. uniprot
Match: A0A2V3IRR8_9FLOR (Histone H1-II n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRR8_9FLOR)

HSP 1 Score: 132 bits (331), Expect = 6.520e-36
Identity = 72/85 (84.71%), Postives = 76/85 (89.41%), Query Frame = 0
Query:    1 MPATKKTVVSKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNIDINKPALIKAIKKGVEMGDFVQIRASYKLAKKGSTVPKK 85
            MPA  +  V KPTYAVMVTESIKELGDRTGSSVQAI+KQLRAKYNIDINKPALIKAIKKGV+ GDFVQI+ASYKLAKK   VPKK
Sbjct:    1 MPAAARKAVVKPTYAVMVTESIKELGDRTGSSVQAISKQLRAKYNIDINKPALIKAIKKGVQTGDFVQIKASYKLAKK-VPVPKK 84          
BLAST of Gcaud1789.t1 vs. uniprot
Match: R7Q4J4_CHOCR (H15 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4J4_CHOCR)

HSP 1 Score: 112 bits (280), Expect = 2.060e-28
Identity = 63/94 (67.02%), Postives = 70/94 (74.47%), Query Frame = 0
Query:    1 MPATKKTVVSKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNIDINKPALIKAIKKGVEMGDFVQIRASYKLAKKGSTVPKKKTTVAVKPK 94
            MPA K     KPTYAVMV ESIK L DRTGSSVQAI+K ++A+Y+IDINKPAL+KAIKKGVE GD VQI+ASYKL K       KK   A KPK
Sbjct:    1 MPAKKAAAPPKPTYAVMVAESIKALNDRTGSSVQAISKHVKAQYHIDINKPALVKAIKKGVEAGDLVQIKASYKLNKL------KKAPAAAKPK 88          
BLAST of Gcaud1789.t1 vs. uniprot
Match: A0A5J4Z4T4_PORPP (Histone H1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4T4_PORPP)

HSP 1 Score: 84.3 bits (207), Expect = 1.380e-17
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 0
Query:    6 KTVVSKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNIDINKPALIKAIKKGVEMGDFVQIRASYKLAKKGSTVPKKKTTVAVKPK 94
            KTV S P YA MV+ +IK++GDRTGSS QAI K +  +Y I++NK AL +++K GV+ G   +++ASYK+  K    PKKKT    KPK
Sbjct:   26 KTVPSHPPYATMVSAAIKKIGDRTGSSQQAIAKCIGEEYKIEVNKVALSRSLKSGVDAGSLAKVKASYKVVAKEKPAPKKKTA---KPK 111          
BLAST of Gcaud1789.t1 vs. uniprot
Match: A0A7S1ET73_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ET73_9RHOD)

HSP 1 Score: 80.5 bits (197), Expect = 4.780e-16
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 0
Query:   10 SKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNIDINKPALIKAIKKGVEMGDFVQIRASYKLAKKG---STVPKKKT 87
            S P Y  MV ++IKE+GDRTGSS+ AITK +   Y +++NK AL KAIKKGVE G  V+++ASYKL+ K    ++ PKK T
Sbjct:    9 SHPPYTSMVAKAIKEIGDRTGSSMPAITKFIGEHYKVEVNKVALSKAIKKGVEDGSLVRVKASYKLSPKAVAKASKPKKPT 89          
BLAST of Gcaud1789.t1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.470e-9
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 0
Query:   10 SKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKY-NIDINKPALIKAIKKGVEMGDFVQIRASYKLA 76
            +KPTY  MV ++IK L +R GSS+QAI K + A Y  ++     +  A+KKGVE G F++++ASYKL+
Sbjct:    4 TKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLS 71          
BLAST of Gcaud1789.t1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.120e-8
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 0
Query:   10 SKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKY-NIDINKPALIKAIKKGVEMGDFVQIRASYKLA 76
            +KPTY VMV ++IK L +R GSS+QAI K + A Y  ++     +  A+KKGVE G F++++ASYKL+
Sbjct:   97 AKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLS 164          
BLAST of Gcaud1789.t1 vs. uniprot
Match: A0A5B8MKI8_9CHLO (Histone H1/5 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MKI8_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 3.440e-8
Identity = 41/84 (48.81%), Postives = 48/84 (57.14%), Query Frame = 0
Query:    4 TKKTVVSKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNI-DINKPALIKAIKKGVEMGDFVQIRASYKLAKKGSTVPKKK 86
            TKK   S P YA MV  +I  L DRTGSS  AI K L   Y + D  K +L   +KK VE G  V+++ASYKL     T PKKK
Sbjct:    9 TKKAAPSHPPYADMVKAAIVALKDRTGSSAVAIAKYLDGNYKLPDTYKKSLSLTLKKLVESGKLVKVKASYKLGSL-KTEPKKK 91          
BLAST of Gcaud1789.t1 vs. uniprot
Match: A0A7S3E2R7_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E2R7_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 4.340e-8
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 0
Query:    1 MPATKKTVVSKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNIDIN-KPALIKAIKKGVEMGDFVQIRASYKLAK-KGSTVPKKK 86
            MPAT     S P+Y  MV  ++  L DRTGSS  AI K L+A Y++  N   AL + +KK VE G  V+++ASYKL   K    PKKK
Sbjct:   57 MPATS----SHPSYEAMVKAALVALKDRTGSSTHAIAKYLKANYDLPENFGKALSRYLKKMVETGKLVKVKASYKLGSLKNEPKPKKK 140          
BLAST of Gcaud1789.t1 vs. uniprot
Match: A0A835YX75_9STRA (Linker histone H1 and H5 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX75_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.230e-7
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 0
Query:    8 VVSKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNIDINKPALIKAIKKGVEMGDFVQIRASYKLA 76
            V SKPTY  M  ++I +L +R GSS  AI K L A   I      L +A+KKGVE G  V+++ASYKLA
Sbjct:    2 VSSKPTYYEMAADAIAKLKERNGSSPAAIKKYLEANNKITFAPHLLRQALKKGVESGKLVKVKASYKLA 70          
BLAST of Gcaud1789.t1 vs. uniprot
Match: V7BJS9_PHAVU (H15 domain-containing protein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7BJS9_PHAVU)

HSP 1 Score: 58.5 bits (140), Expect = 1.870e-7
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 0
Query:    3 ATKKTVVSKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNI--DINKPALIKAIKKGVEMGDFVQIRASYKLAKKGSTVPKK---KTTVAV--KPKSTAKSTA 101
            ATKK + S PT+AVM+TE+I  L +RTGSS  AITK +  K+       K  ++  +KK V  G  V+++ S+KLA   S        K T+AV  KPKS AK TA
Sbjct:   14 ATKKPL-SHPTFAVMITEAIASLKERTGSSQYAITKFIEGKHKELPPTYKKLVLLHLKKSVAAGKLVKVKNSFKLAPTKSXXXXXXXVKATIAVPKKPKSVAKPTA 118          
The following BLAST results are available for this feature:
BLAST of Gcaud1789.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A2V3IRR8_9FLOR6.520e-3684.71Histone H1-II n=1 Tax=Gracilariopsis chorda TaxID=... [more]
R7Q4J4_CHOCR2.060e-2867.02H15 domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A5J4Z4T4_PORPP1.380e-1750.56Histone H1 n=1 Tax=Porphyridium purpureum TaxID=35... [more]
A0A7S1ET73_9RHOD4.780e-1654.32Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
D8LQ80_ECTSI3.470e-947.06Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE1.120e-848.53H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A5B8MKI8_9CHLO3.440e-848.81Histone H1/5 n=1 Tax=Chloropicon primus TaxID=1764... [more]
A0A7S3E2R7_9CHLO4.340e-846.59Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A835YX75_9STRA1.230e-749.28Linker histone H1 and H5 family-domain-containing ... [more]
V7BJS9_PHAVU1.870e-744.34H15 domain-containing protein n=1 Tax=Phaseolus vu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005818Linker histone H1/H5, domain H15SMARTSM00526h15plus2coord: 8..72
e-value: 4.1E-17
score: 72.8
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 11..75
e-value: 1.1E-16
score: 60.9
IPR005818Linker histone H1/H5, domain H15PROSITEPS51504H15coord: 10..77
score: 24.11297
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 5..89
e-value: 2.7E-18
score: 67.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..149
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 10..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_472_length_24489_cov_3.453562contigNODE_472_length_24489_cov_3.453562:10583..11215 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1789.t1Gcaud1789.t1Gracilaria caudata M_176_S67 malemRNANODE_472_length_24489_cov_3.453562 10583..11215 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1789.t1 ID=Gcaud1789.t1|Name=Gcaud1789.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=175bp
MPATKKTVVSKPTYAVMVTESIKELGDRTGSSVQAITKQLRAKYNIDINK
PALIKAIKKGVEMGDFVQIRASYKLAKKGSTVPKKKTTVAVKPKSTAKST
ATAAPKKKISASAAKKALKPKKTLTKTKTRTRSVTSSTTTTTTATKKRTT
KRSAAARKDASKMAATSKKRAAKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005818Histone_H1/H5_H15
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf