Gcaud1781.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1781.t1
Unique Name	Gcaud1781.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	200

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_338_length_29361_cov_4.567031	contig	NODE_338_length_29361_cov_4.567031:15363..15962 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173264.KI913949_gene470
PFAMs	Polyketide_cyc
Max annot lvl	1117\|Cyanobacteria
Evalue	1.42e-23
EggNOG OGs	COG5637@1\|root,COG5637@2\|Bacteria,1G53E@1117\|Cyanobacteria,1HAJX@1150\|Oscillatoriales
Description	PFAM Polyketide cyclase dehydrase and lipid transport
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1781	Gcaud1781	Gracilaria caudata M_176_S67 male	gene	NODE_338_length_29361_cov_4.567031 15363..15962 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1781.t1.start1	Gcaud1781.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_338_length_29361_cov_4.567031 15363..15365 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1781.t1.CDS1	Gcaud1781.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_338_length_29361_cov_4.567031 15363..15962 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1781.t1.exon1	Gcaud1781.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_338_length_29361_cov_4.567031 15363..15962 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1781.t1.stop1	Gcaud1781.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_338_length_29361_cov_4.567031 15960..15962 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1781.t1	Gcaud1781.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_338_length_29361_cov_4.567031 15363..15962 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_338_length_29361_cov_4.567031:15363..15962+
coding sequence from alignment at NODE_338_length_29361_cov_4.567031:15363..15962+

mRNA sequence

>Gcaud1781.t1 ID=Gcaud1781.t1|Name=Gcaud1781.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=200bp
MHNTTNIAFTTTGVFIPRRRAFRYAPLTHRKAPPIFTAPTAEMVRVSVPL
KIEAPSRYCFQLFSDLSTMSEWSSALEAVERDAEDPSFSEWKFAWNGVRL
SWRAKDVENVQEQSSDIPSIRWRSVSGLVHTGAVQFEDLQQGATNLVMTV
DYDIESLLASIMRSSLVSSFVEGAIESDLSKFRSYALRKYRKARMSGEI*

spliced messenger RNA

>Gcaud1781.t1 ID=Gcaud1781.t1|Name=Gcaud1781.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=600bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:15363..15962+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAACACAACCAATATTGCCTTCACCACCACAGGCGTCTTCATCCC
GCGGCGCAGAGCGTTCCGATATGCCCCACTTACTCACAGAAAAGCGCCGC
CTATTTTCACCGCACCAACAGCAGAGATGGTACGCGTCAGCGTTCCGCTC
AAGATTGAAGCTCCAAGCCGCTATTGCTTTCAACTGTTTTCCGACTTGTC
CACAATGTCGGAGTGGTCATCAGCACTGGAGGCCGTCGAAAGAGATGCTG
AAGACCCGTCTTTCTCAGAGTGGAAGTTTGCGTGGAACGGCGTTCGTCTC
AGTTGGCGAGCTAAAGATGTTGAGAATGTTCAAGAGCAAAGCAGTGACAT
CCCGTCAATTCGATGGAGGAGTGTCTCAGGACTCGTGCATACGGGCGCCG
TGCAGTTTGAGGATTTGCAACAAGGAGCCACAAATCTCGTTATGACTGTA
GATTATGACATCGAAAGTCTCTTGGCGTCGATAATGCGCTCTTCCCTGGT
GTCCAGTTTTGTGGAGGGAGCCATTGAGAGCGACCTATCCAAATTCCGCA
GCTACGCTCTACGCAAGTATCGCAAAGCTAGGATGTCGGGTGAGATATGA

protein sequence of Gcaud1781.t1

>Gcaud1781.t1 ID=Gcaud1781.t1|Name=Gcaud1781.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=200bp
MHNTTNIAFTTTGVFIPRRRAFRYAPLTHRKAPPIFTAPTAEMVRVSVPL
KIEAPSRYCFQLFSDLSTMSEWSSALEAVERDAEDPSFSEWKFAWNGVRL
SWRAKDVENVQEQSSDIPSIRWRSVSGLVHTGAVQFEDLQQGATNLVMTV
DYDIESLLASIMRSSLVSSFVEGAIESDLSKFRSYALRKYRKARMSGEI*

mRNA from alignment at NODE_338_length_29361_cov_4.567031:15363..15962+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1781.t1 ID=Gcaud1781.t1|Name=Gcaud1781.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=600bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:15363..15962+ (Gracilaria caudata M_176_S67 male)
ATGCACAACACAACCAATATTGCCTTCACCACCACAGGCGTCTTCATCCC
GCGGCGCAGAGCGTTCCGATATGCCCCACTTACTCACAGAAAAGCGCCGC
CTATTTTCACCGCACCAACAGCAGAGATGGTACGCGTCAGCGTTCCGCTC
AAGATTGAAGCTCCAAGCCGCTATTGCTTTCAACTGTTTTCCGACTTGTC
CACAATGTCGGAGTGGTCATCAGCACTGGAGGCCGTCGAAAGAGATGCTG
AAGACCCGTCTTTCTCAGAGTGGAAGTTTGCGTGGAACGGCGTTCGTCTC
AGTTGGCGAGCTAAAGATGTTGAGAATGTTCAAGAGCAAAGCAGTGACAT
CCCGTCAATTCGATGGAGGAGTGTCTCAGGACTCGTGCATACGGGCGCCG
TGCAGTTTGAGGATTTGCAACAAGGAGCCACAAATCTCGTTATGACTGTA
GATTATGACATCGAAAGTCTCTTGGCGTCGATAATGCGCTCTTCCCTGGT
GTCCAGTTTTGTGGAGGGAGCCATTGAGAGCGACCTATCCAAATTCCGCA
GCTACGCTCTACGCAAGTATCGCAAAGCTAGGATGTCGGGTGAGATATGA

Coding sequence (CDS) from alignment at NODE_338_length_29361_cov_4.567031:15363..15962+

>Gcaud1781.t1 ID=Gcaud1781.t1|Name=Gcaud1781.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=600bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:15363..15962+ (Gracilaria caudata M_176_S67 male)
ATGCACAACACAACCAATATTGCCTTCACCACCACAGGCGTCTTCATCCC
GCGGCGCAGAGCGTTCCGATATGCCCCACTTACTCACAGAAAAGCGCCGC
CTATTTTCACCGCACCAACAGCAGAGATGGTACGCGTCAGCGTTCCGCTC
AAGATTGAAGCTCCAAGCCGCTATTGCTTTCAACTGTTTTCCGACTTGTC
CACAATGTCGGAGTGGTCATCAGCACTGGAGGCCGTCGAAAGAGATGCTG
AAGACCCGTCTTTCTCAGAGTGGAAGTTTGCGTGGAACGGCGTTCGTCTC
AGTTGGCGAGCTAAAGATGTTGAGAATGTTCAAGAGCAAAGCAGTGACAT
CCCGTCAATTCGATGGAGGAGTGTCTCAGGACTCGTGCATACGGGCGCCG
TGCAGTTTGAGGATTTGCAACAAGGAGCCACAAATCTCGTTATGACTGTA
GATTATGACATCGAAAGTCTCTTGGCGTCGATAATGCGCTCTTCCCTGGT
GTCCAGTTTTGTGGAGGGAGCCATTGAGAGCGACCTATCCAAATTCCGCA
GCTACGCTCTACGCAAGTATCGCAAAGCTAGGATGTCGGGTGAGATATGA