Gcaud1739.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1739.t1
Unique Name	Gcaud1739.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	498

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1608_length_9502_cov_3.964935	contig	NODE_1608_length_9502_cov_3.964935:357..1850 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1739	Gcaud1739	Gracilaria caudata M_176_S67 male	gene	NODE_1608_length_9502_cov_3.964935 357..1850 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1739.t1.start1	Gcaud1739.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1608_length_9502_cov_3.964935 357..359 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1739.t1.CDS1	Gcaud1739.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1608_length_9502_cov_3.964935 357..1850 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1739.t1.exon1	Gcaud1739.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1608_length_9502_cov_3.964935 357..1850 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1739.t1.stop1	Gcaud1739.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1608_length_9502_cov_3.964935 1848..1850 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1739.t1	Gcaud1739.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1608_length_9502_cov_3.964935 357..1850 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1608_length_9502_cov_3.964935:357..1850+
coding sequence from alignment at NODE_1608_length_9502_cov_3.964935:357..1850+

mRNA sequence

>Gcaud1739.t1 ID=Gcaud1739.t1|Name=Gcaud1739.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=498bp
MPNARQSDLPNRPTYLPPLSPSARSHPHHAADVPPLQSYPVKLSADIVNA
LLNAEGATIEFTHDEQGKIYIPNRPDVTFTTRAITAHNADTSRAALFSRR
GSNLRLVGPINHEMEIDRFPNQRSHHAKKRAVNSRNTTKREVKPLDDTAD
APAPKPRARKSTEKRPRAPTRRPAAAAANGNSGIPVLRSVPITAPALRSA
PASPTENGRQPPAKRPATTSRNAIGSLGARRISPPSNTQLPKPVARQTPT
KTRLSPHSNSRGPSPGVHSPSSPRVSTRAKMDNLEDIRRHVVHSLALGDM
TMAAILRRHDACNMESNVLGDALGEVAEKTGKTYRLKKRSWREVYDDYTD
YSDMERKTMAQNRHKAGTVDGKLAMEVMNDDLLNHEVRDLAKLMSRSVQE
AKHEEDDDRLRKNYEQVHRLYSEVIERVSAVGVKLRRLGDRLETCSDSER
GQVCALIDSANKTHGERYSRFKRVLPKMHGYLKQVRRAVEKYEQWDE*

spliced messenger RNA

>Gcaud1739.t1 ID=Gcaud1739.t1|Name=Gcaud1739.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:357..1850+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAACGCGCGTCAGTCCGACCTGCCCAATCGGCCCACGTATCTGCC
GCCGCTTTCGCCGTCGGCCAGATCTCATCCGCACCATGCTGCCGATGTGC
CGCCGCTACAGAGCTACCCTGTCAAGCTCTCCGCGGACATTGTCAACGCC
CTGCTCAACGCCGAAGGAGCCACCATCGAGTTTACGCATGATGAGCAGGG
CAAGATTTACATCCCCAACCGCCCGGATGTAACCTTCACCACGCGCGCCA
TCACCGCCCACAACGCCGACACCTCGCGGGCGGCTCTCTTCTCTCGCCGT
GGAAGCAACTTGCGCCTGGTCGGTCCCATCAACCATGAGATGGAAATCGA
CCGCTTCCCTAACCAGCGCTCGCACCACGCCAAGAAGCGCGCCGTCAACT
CGCGCAACACCACCAAGCGTGAGGTGAAGCCGCTTGACGACACCGCCGAC
GCGCCAGCCCCAAAACCTCGTGCGCGAAAAAGCACTGAGAAGCGTCCGCG
TGCTCCGACGCGTCGACCGGCCGCTGCCGCTGCCAACGGAAACTCCGGCA
TACCTGTCCTGCGGAGTGTTCCAATCACCGCGCCGGCGCTGCGATCTGCG
CCTGCCTCGCCCACCGAGAATGGGCGTCAGCCCCCGGCGAAGCGTCCGGC
GACGACATCGCGGAACGCCATCGGGTCGCTGGGGGCGCGTCGCATCTCAC
CGCCGTCGAACACCCAGCTGCCGAAGCCTGTTGCACGGCAGACGCCGACG
AAGACGCGCCTCTCGCCGCACTCTAATTCGAGAGGGCCGTCCCCTGGTGT
GCACTCTCCGAGCAGCCCGCGTGTCAGCACGCGCGCGAAGATGGATAACC
TGGAGGATATCCGTCGGCACGTGGTGCACTCATTGGCGCTGGGTGACATG
ACCATGGCCGCCATCCTTCGTCGTCATGATGCGTGCAACATGGAGAGTAA
CGTGCTTGGCGACGCACTTGGTGAGGTGGCAGAGAAGACCGGCAAGACGT
ACCGGCTGAAGAAGCGGTCGTGGCGGGAGGTGTACGATGACTACACCGAT
TACAGCGACATGGAGAGGAAGACGATGGCTCAGAATCGTCACAAAGCCGG
TACGGTGGACGGGAAGCTGGCGATGGAGGTGATGAACGATGACCTGCTGA
ATCATGAGGTGCGTGATTTAGCTAAGCTCATGAGCAGGTCGGTGCAGGAG
GCGAAGCACGAGGAGGACGATGACAGGCTGCGGAAAAACTACGAGCAGGT
GCACAGGCTCTACAGCGAGGTAATCGAAAGAGTCTCTGCCGTAGGTGTGA
AGCTGCGACGGTTGGGAGACAGGCTGGAAACATGCAGCGACAGCGAGAGG
GGTCAGGTATGCGCTCTAATTGATTCCGCGAACAAAACACACGGCGAACG
GTACTCTCGGTTCAAACGCGTGCTGCCTAAAATGCATGGGTATCTGAAGC
AGGTACGTCGGGCAGTGGAGAAGTATGAGCAATGGGATGAGTAG

protein sequence of Gcaud1739.t1

>Gcaud1739.t1 ID=Gcaud1739.t1|Name=Gcaud1739.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=498bp
MPNARQSDLPNRPTYLPPLSPSARSHPHHAADVPPLQSYPVKLSADIVNA
LLNAEGATIEFTHDEQGKIYIPNRPDVTFTTRAITAHNADTSRAALFSRR
GSNLRLVGPINHEMEIDRFPNQRSHHAKKRAVNSRNTTKREVKPLDDTAD
APAPKPRARKSTEKRPRAPTRRPAAAAANGNSGIPVLRSVPITAPALRSA
PASPTENGRQPPAKRPATTSRNAIGSLGARRISPPSNTQLPKPVARQTPT
KTRLSPHSNSRGPSPGVHSPSSPRVSTRAKMDNLEDIRRHVVHSLALGDM
TMAAILRRHDACNMESNVLGDALGEVAEKTGKTYRLKKRSWREVYDDYTD
YSDMERKTMAQNRHKAGTVDGKLAMEVMNDDLLNHEVRDLAKLMSRSVQE
AKHEEDDDRLRKNYEQVHRLYSEVIERVSAVGVKLRRLGDRLETCSDSER
GQVCALIDSANKTHGERYSRFKRVLPKMHGYLKQVRRAVEKYEQWDE*

mRNA from alignment at NODE_1608_length_9502_cov_3.964935:357..1850+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1739.t1 ID=Gcaud1739.t1|Name=Gcaud1739.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:357..1850+ (Gracilaria caudata M_176_S67 male)
ATGCCTAACGCGCGTCAGTCCGACCTGCCCAATCGGCCCACGTATCTGCC
GCCGCTTTCGCCGTCGGCCAGATCTCATCCGCACCATGCTGCCGATGTGC
CGCCGCTACAGAGCTACCCTGTCAAGCTCTCCGCGGACATTGTCAACGCC
CTGCTCAACGCCGAAGGAGCCACCATCGAGTTTACGCATGATGAGCAGGG
CAAGATTTACATCCCCAACCGCCCGGATGTAACCTTCACCACGCGCGCCA
TCACCGCCCACAACGCCGACACCTCGCGGGCGGCTCTCTTCTCTCGCCGT
GGAAGCAACTTGCGCCTGGTCGGTCCCATCAACCATGAGATGGAAATCGA
CCGCTTCCCTAACCAGCGCTCGCACCACGCCAAGAAGCGCGCCGTCAACT
CGCGCAACACCACCAAGCGTGAGGTGAAGCCGCTTGACGACACCGCCGAC
GCGCCAGCCCCAAAACCTCGTGCGCGAAAAAGCACTGAGAAGCGTCCGCG
TGCTCCGACGCGTCGACCGGCCGCTGCCGCTGCCAACGGAAACTCCGGCA
TACCTGTCCTGCGGAGTGTTCCAATCACCGCGCCGGCGCTGCGATCTGCG
CCTGCCTCGCCCACCGAGAATGGGCGTCAGCCCCCGGCGAAGCGTCCGGC
GACGACATCGCGGAACGCCATCGGGTCGCTGGGGGCGCGTCGCATCTCAC
CGCCGTCGAACACCCAGCTGCCGAAGCCTGTTGCACGGCAGACGCCGACG
AAGACGCGCCTCTCGCCGCACTCTAATTCGAGAGGGCCGTCCCCTGGTGT
GCACTCTCCGAGCAGCCCGCGTGTCAGCACGCGCGCGAAGATGGATAACC
TGGAGGATATCCGTCGGCACGTGGTGCACTCATTGGCGCTGGGTGACATG
ACCATGGCCGCCATCCTTCGTCGTCATGATGCGTGCAACATGGAGAGTAA
CGTGCTTGGCGACGCACTTGGTGAGGTGGCAGAGAAGACCGGCAAGACGT
ACCGGCTGAAGAAGCGGTCGTGGCGGGAGGTGTACGATGACTACACCGAT
TACAGCGACATGGAGAGGAAGACGATGGCTCAGAATCGTCACAAAGCCGG
TACGGTGGACGGGAAGCTGGCGATGGAGGTGATGAACGATGACCTGCTGA
ATCATGAGGTGCGTGATTTAGCTAAGCTCATGAGCAGGTCGGTGCAGGAG
GCGAAGCACGAGGAGGACGATGACAGGCTGCGGAAAAACTACGAGCAGGT
GCACAGGCTCTACAGCGAGGTAATCGAAAGAGTCTCTGCCGTAGGTGTGA
AGCTGCGACGGTTGGGAGACAGGCTGGAAACATGCAGCGACAGCGAGAGG
GGTCAGGTATGCGCTCTAATTGATTCCGCGAACAAAACACACGGCGAACG
GTACTCTCGGTTCAAACGCGTGCTGCCTAAAATGCATGGGTATCTGAAGC
AGGTACGTCGGGCAGTGGAGAAGTATGAGCAATGGGATGAGTAG

Coding sequence (CDS) from alignment at NODE_1608_length_9502_cov_3.964935:357..1850+

>Gcaud1739.t1 ID=Gcaud1739.t1|Name=Gcaud1739.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1494bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:357..1850+ (Gracilaria caudata M_176_S67 male)
ATGCCTAACGCGCGTCAGTCCGACCTGCCCAATCGGCCCACGTATCTGCC
GCCGCTTTCGCCGTCGGCCAGATCTCATCCGCACCATGCTGCCGATGTGC
CGCCGCTACAGAGCTACCCTGTCAAGCTCTCCGCGGACATTGTCAACGCC
CTGCTCAACGCCGAAGGAGCCACCATCGAGTTTACGCATGATGAGCAGGG
CAAGATTTACATCCCCAACCGCCCGGATGTAACCTTCACCACGCGCGCCA
TCACCGCCCACAACGCCGACACCTCGCGGGCGGCTCTCTTCTCTCGCCGT
GGAAGCAACTTGCGCCTGGTCGGTCCCATCAACCATGAGATGGAAATCGA
CCGCTTCCCTAACCAGCGCTCGCACCACGCCAAGAAGCGCGCCGTCAACT
CGCGCAACACCACCAAGCGTGAGGTGAAGCCGCTTGACGACACCGCCGAC
GCGCCAGCCCCAAAACCTCGTGCGCGAAAAAGCACTGAGAAGCGTCCGCG
TGCTCCGACGCGTCGACCGGCCGCTGCCGCTGCCAACGGAAACTCCGGCA
TACCTGTCCTGCGGAGTGTTCCAATCACCGCGCCGGCGCTGCGATCTGCG
CCTGCCTCGCCCACCGAGAATGGGCGTCAGCCCCCGGCGAAGCGTCCGGC
GACGACATCGCGGAACGCCATCGGGTCGCTGGGGGCGCGTCGCATCTCAC
CGCCGTCGAACACCCAGCTGCCGAAGCCTGTTGCACGGCAGACGCCGACG
AAGACGCGCCTCTCGCCGCACTCTAATTCGAGAGGGCCGTCCCCTGGTGT
GCACTCTCCGAGCAGCCCGCGTGTCAGCACGCGCGCGAAGATGGATAACC
TGGAGGATATCCGTCGGCACGTGGTGCACTCATTGGCGCTGGGTGACATG
ACCATGGCCGCCATCCTTCGTCGTCATGATGCGTGCAACATGGAGAGTAA
CGTGCTTGGCGACGCACTTGGTGAGGTGGCAGAGAAGACCGGCAAGACGT
ACCGGCTGAAGAAGCGGTCGTGGCGGGAGGTGTACGATGACTACACCGAT
TACAGCGACATGGAGAGGAAGACGATGGCTCAGAATCGTCACAAAGCCGG
TACGGTGGACGGGAAGCTGGCGATGGAGGTGATGAACGATGACCTGCTGA
ATCATGAGGTGCGTGATTTAGCTAAGCTCATGAGCAGGTCGGTGCAGGAG
GCGAAGCACGAGGAGGACGATGACAGGCTGCGGAAAAACTACGAGCAGGT
GCACAGGCTCTACAGCGAGGTAATCGAAAGAGTCTCTGCCGTAGGTGTGA
AGCTGCGACGGTTGGGAGACAGGCTGGAAACATGCAGCGACAGCGAGAGG
GGTCAGGTATGCGCTCTAATTGATTCCGCGAACAAAACACACGGCGAACG
GTACTCTCGGTTCAAACGCGTGCTGCCTAAAATGCATGGGTATCTGAAGC
AGGTACGTCGGGCAGTGGAGAAGTATGAGCAATGGGATGAGTAG