Gcaud1739.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1739.t1
Unique NameGcaud1739.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length498
Homology
BLAST of Gcaud1739.t1 vs. uniprot
Match: A0A2V3IWN5_9FLOR (ELL domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWN5_9FLOR)

HSP 1 Score: 415 bits (1066), Expect = 1.760e-137
Identity = 247/511 (48.34%), Postives = 338/511 (66.14%), Query Frame = 0
Query:    1 MPNARQ--SDLPNRPTYLPPLSPSARSHPHHAADVPPLQSYPVKLSADIVNALLNAEG-ATIEFTHDEQGKIYIPNRPDVTFTTRAITAHNADTSRAALFSRRGSNLRLVGPINHEMEIDRFPNQRSHHAKKRAVN-----SRNTTKREVKPLDDTADAPAPKPRARKSTE-KRPRAPTRRPAAAAAN-------GNSGIPVLRSVPITAPALRSAPASPTENGRQPPAKRPATTSRNAIGSLGARRISPPSNTQLPKPVARQTPTKTRLSPHSNSRGPSPGVHSPSSPRVSTRAKMDNLEDIRRHVVHSLALGDMTMAAILRRHDACNMESNVLGDALGEVAEKTGKTYRLKKRSWREVYDDYTDYSDMERKTMAQNRHKA-GTVDGKLAMEVMNDDLLNHEVRDLAKLMSRSVQEAKHEEDDDRLRKNYEQVHRLYSEVIERVSAVGVKLRRLGDRLETCSDSE-RGQVCALIDSANKTHGERYSRFKRVLPKMHGYLKQVRRAVEKYE 493
            MP A Q  SDLP+ PTYLPPLSPSA+ HPHHA+  P  Q+Y +KLS+D+ NA+L  +  ATIEFT  +QG I++PN  DV+F TR   A++ +T+RAAL+SRRG+N+RLV P+++EM+I +      H   +R VN      R  TKR+ KP +D+   P  +PR+R   +  R  +PTR   A  A          S I V RS PI AP   ++ + PT+NG+Q   +R   +S ++IG+L  +R SPPS TQLP P+ R  PTK+R +P + SRG SP   + S   +  + K+ + E+IRRHVVHSLALGDMT+ A+ RRH++ NM+S VL + L +VA+ TG  YRLKKR+WREVYD Y++YSDM RK M QNR +  G VDGKL  E MNDD L  E+ +L+K  S+ V E +++ED+   R+NYE+VH LY EVI+R+S V  K   L +RLETC++S  + +V   I S ++ +GE + RF+RVLPKMHG+LK ++ AV  YE
Sbjct:    1 MPTAHQPQSDLPHSPTYLPPLSPSAKCHPHHASGTPVPQTYQLKLSSDVFNAILKGQDQATIEFTELDQGTIHLPNHADVSFNTRPTPANDDETARAALYSRRGNNMRLVAPVHYEMDIHK------HTTPRRKVNIGPLPKRGKTKRDSKPNEDS-QRPPKRPRSRIPVQCPRGESPTRNSTALPATPSQSHKANGSVIQVPRSGPINAPLRSTSRSPPTQNGKQSGTQRSMKSSISSIGAL-RQRFSPPSTTQLPGPIGRAAPTKSRQAPQTISRGGSPNTQTGSGAGLGAKPKLKDSEEIRRHVVHSLALGDMTLNAMRRRHESRNMDSAVLDEVLKDVADVTGDNYRLKKRAWREVYDSYSEYSDMNRKLMRQNRVQVCGLVDGKLRAEFMNDDALQEEINELSKQFSKGVYEVENDEDERLARRNYERVHVLYGEVIDRMSMVNGKFVELRERLETCTESSGKEEVKNTIRSCDRRYGESFKRFERVLPKMHGFLKGIQEAVCNYE 503          
BLAST of Gcaud1739.t1 vs. uniprot
Match: R7QEU7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEU7_CHOCR)

HSP 1 Score: 145 bits (367), Expect = 8.580e-34
Identity = 159/532 (29.89%), Postives = 243/532 (45.68%), Query Frame = 0
Query:    3 NARQSDLPN-RPTYLPPLSPSARSHPHHAADVPPLQSYPVKLSADIVNALLNAEGATIEFTH--DEQGKIYIPNRPDVTFTTRAITAHNADTSRAALFSRRGSNLRLVGPINHEMEIDRFPN-QRSHHAKKRAVNSRNTTK-REVKPLDDTADAPAPKPRARKSTEKRPRAPTRRPAAAAANGNSGIPVLRSVPITAP----ALRSAPASPTENGRQPPAKRPATTSRNAIGSLGARRISPPSNTQ---------LPKPVARQ-----------TPTKTRLSPHSNSR-GPSP-GVHSPSSPRVST-RAKMDNLEDIRRHVVHSLALGDMTMAAILRR---HDACNMESNVLGDALGEVAEKTGKTYRLKKRSWREVYDDYTDYSDMERKTMAQNRHKAGTVDG-----KLAMEVMNDDLLNHEVRDLAKLMSR-SVQEAKHEEDDDRLRKNYEQVHRLYSEVIERVSAVGVKLRRLGDRL-ETCSDSERGQVCALIDSANKTHGERYSRFKRVLPKMHGYLKQVRRAVEKY 492
            +A  S +P  R  YLPP+S SA       +D      + VKL+ ++V+ L+          H  +    + +PN     FT R I     D+ RA  +SR  ++LR VGPI  +++++R  +   S  AK RA + R+ +K R +K  DD A  P  + R RK+ EKRPR   + P              +S PI +P    +  + P     NGR        T S     S   RRISP +N+Q         LP+   R            TP K R SP+ + R  P P   HSPSSP+    RAK ++++++R +V+H LA       ++  R    DA       L   L EVA      Y L+   W ++ +DY +Y+  ER  M   R +  +V+G      +   VM D  L+ E+R   K  +  +V +   E ++   RK +E+ + LY+EVI R+  +    + L  R  E  S  ER  +   I +A + H +R      VLP +HG L+ +R A++K+
Sbjct:  202 SASASTIPEGRSLYLPPISTSANIKDGSPSDSAQPVVFAVKLTEEMVSTLVAGAATDDASIHLAESHAVLNMPNHDPFKFTLRPI-GEGDDSRRAVCYSRNATDLRAVGPIVADLDLERANSVDASSVAKIRAADERDKSKKRGMKLADDIA--PTARKR-RKTVEKRPRPAPKMP--------------KSSPIVSPGRGHSANNTPPRARPNGRX---XXTPTASAAVPPSSAPRRISPQTNSQMSGLFGNGNLPEMTERVRPGASTTRRSVTPPKFRSSPYGSRRTSPLPTSAHSPSSPKTGNLRAKSEDIDELRVNVMHILASHPRAFHSLSSRVIESDAPPEVKEDLKSVLQEVATCKDGIYTLRGHCWAKISEDYQEYTHAERTQMRIARSEWDSVNGTNDVRSITDGVMTDAQLDSEIRSFQKAKTDDNVGKISSEREEKEFRKTFEKWYPLYAEVINRLEKMSKMFKSLDSRFKERRSAEERDSIVKRITTAYEKHKKRREELITVLPLLHGNLRSIRSALDKW 712          
The following BLAST results are available for this feature:
BLAST of Gcaud1739.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IWN5_9FLOR1.760e-13748.34ELL domain-containing protein n=1 Tax=Gracilariops... [more]
R7QEU7_CHOCR8.580e-3429.89Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042065E3 ubiquitin-protein ligase ELL-likeGENE3D1.10.10.2670coord: 279..368
e-value: 1.7E-10
score: 42.7
IPR019464RNA polymerase II elongation factor ELL, N-terminalPFAMPF10390ELLcoord: 53..364
e-value: 1.1E-10
score: 41.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..279
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..159
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 286..361

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1608_length_9502_cov_3.964935contigNODE_1608_length_9502_cov_3.964935:357..1850 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1739.t1Gcaud1739.t1Gracilaria caudata M_176_S67 malemRNANODE_1608_length_9502_cov_3.964935 357..1850 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1739.t1 ID=Gcaud1739.t1|Name=Gcaud1739.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=498bp
MPNARQSDLPNRPTYLPPLSPSARSHPHHAADVPPLQSYPVKLSADIVNA
LLNAEGATIEFTHDEQGKIYIPNRPDVTFTTRAITAHNADTSRAALFSRR
GSNLRLVGPINHEMEIDRFPNQRSHHAKKRAVNSRNTTKREVKPLDDTAD
APAPKPRARKSTEKRPRAPTRRPAAAAANGNSGIPVLRSVPITAPALRSA
PASPTENGRQPPAKRPATTSRNAIGSLGARRISPPSNTQLPKPVARQTPT
KTRLSPHSNSRGPSPGVHSPSSPRVSTRAKMDNLEDIRRHVVHSLALGDM
TMAAILRRHDACNMESNVLGDALGEVAEKTGKTYRLKKRSWREVYDDYTD
YSDMERKTMAQNRHKAGTVDGKLAMEVMNDDLLNHEVRDLAKLMSRSVQE
AKHEEDDDRLRKNYEQVHRLYSEVIERVSAVGVKLRRLGDRLETCSDSER
GQVCALIDSANKTHGERYSRFKRVLPKMHGYLKQVRRAVEKYEQWDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042065E3_ELL-like
IPR019464ELL_N
IPR036390WH_DNA-bd_sf