Gcaud1714.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1714.t1
Unique NameGcaud1714.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_850_length_17024_cov_4.708026contigNODE_850_length_17024_cov_4.708026:13056..13490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1714Gcaud1714Gracilaria caudata M_176_S67 malegeneNODE_850_length_17024_cov_4.708026 13056..13490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1714.t1.stop1Gcaud1714.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_850_length_17024_cov_4.708026 13056..13058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1714.t1.CDS1Gcaud1714.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_850_length_17024_cov_4.708026 13056..13490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1714.t1.exon1Gcaud1714.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_850_length_17024_cov_4.708026 13056..13490 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1714.t1.start1Gcaud1714.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_850_length_17024_cov_4.708026 13488..13490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1714.t1Gcaud1714.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_850_length_17024_cov_4.708026 13056..13490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1714.t1 ID=Gcaud1714.t1|Name=Gcaud1714.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=145bp
MVPSKPEEHASDDKIPNGSIVNPTATPLPHQWSTLESFQETWEDIKDAVT
ETQAYISISSKFESFSKAANSAWKLSKKVAWVLGTTSLVLVVPLLYEIDK
ELGPDASVSATPPAPASDSAAADATTTDASTQSSSAATTTSQQS*
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spliced messenger RNA

>Gcaud1714.t1 ID=Gcaud1714.t1|Name=Gcaud1714.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp|location=Sequence derived from alignment at NODE_850_length_17024_cov_4.708026:13056..13490- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCGTCTAAGCCGGAAGAACATGCGTCCGATGACAAGATTCCGAA
CGGATCCATTGTCAATCCTACCGCAACCCCGCTCCCACATCAGTGGTCCA
CGTTGGAGTCGTTTCAAGAGACCTGGGAAGACATCAAGGACGCCGTAACA
GAGACTCAAGCTTACATTTCTATCTCCTCAAAGTTCGAGTCCTTTTCCAA
GGCTGCAAATTCCGCATGGAAGCTTTCCAAGAAAGTCGCCTGGGTACTGG
GTACCACCTCACTCGTTCTTGTCGTGCCACTGCTCTATGAAATCGACAAG
GAGTTGGGGCCAGATGCATCTGTCAGCGCCACCCCACCTGCGCCTGCATC
CGATTCTGCCGCTGCCGATGCGACTACCACCGACGCCTCTACGCAGTCTT
CGTCCGCCGCAACCACCACTTCACAGCAGTCGTAA
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protein sequence of Gcaud1714.t1

>Gcaud1714.t1 ID=Gcaud1714.t1|Name=Gcaud1714.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=145bp
MVPSKPEEHASDDKIPNGSIVNPTATPLPHQWSTLESFQETWEDIKDAVT
ETQAYISISSKFESFSKAANSAWKLSKKVAWVLGTTSLVLVVPLLYEIDK
ELGPDASVSATPPAPASDSAAADATTTDASTQSSSAATTTSQQS*
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mRNA from alignment at NODE_850_length_17024_cov_4.708026:13056..13490-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1714.t1 ID=Gcaud1714.t1|Name=Gcaud1714.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp|location=Sequence derived from alignment at NODE_850_length_17024_cov_4.708026:13056..13490- (Gracilaria caudata M_176_S67 male)
ATGGTGCCGTCTAAGCCGGAAGAACATGCGTCCGATGACAAGATTCCGAA
CGGATCCATTGTCAATCCTACCGCAACCCCGCTCCCACATCAGTGGTCCA
CGTTGGAGTCGTTTCAAGAGACCTGGGAAGACATCAAGGACGCCGTAACA
GAGACTCAAGCTTACATTTCTATCTCCTCAAAGTTCGAGTCCTTTTCCAA
GGCTGCAAATTCCGCATGGAAGCTTTCCAAGAAAGTCGCCTGGGTACTGG
GTACCACCTCACTCGTTCTTGTCGTGCCACTGCTCTATGAAATCGACAAG
GAGTTGGGGCCAGATGCATCTGTCAGCGCCACCCCACCTGCGCCTGCATC
CGATTCTGCCGCTGCCGATGCGACTACCACCGACGCCTCTACGCAGTCTT
CGTCCGCCGCAACCACCACTTCACAGCAGTCGTAA
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Coding sequence (CDS) from alignment at NODE_850_length_17024_cov_4.708026:13056..13490-

>Gcaud1714.t1 ID=Gcaud1714.t1|Name=Gcaud1714.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=435bp|location=Sequence derived from alignment at NODE_850_length_17024_cov_4.708026:13056..13490- (Gracilaria caudata M_176_S67 male)
ATGGTGCCGTCTAAGCCGGAAGAACATGCGTCCGATGACAAGATTCCGAA
CGGATCCATTGTCAATCCTACCGCAACCCCGCTCCCACATCAGTGGTCCA
CGTTGGAGTCGTTTCAAGAGACCTGGGAAGACATCAAGGACGCCGTAACA
GAGACTCAAGCTTACATTTCTATCTCCTCAAAGTTCGAGTCCTTTTCCAA
GGCTGCAAATTCCGCATGGAAGCTTTCCAAGAAAGTCGCCTGGGTACTGG
GTACCACCTCACTCGTTCTTGTCGTGCCACTGCTCTATGAAATCGACAAG
GAGTTGGGGCCAGATGCATCTGTCAGCGCCACCCCACCTGCGCCTGCATC
CGATTCTGCCGCTGCCGATGCGACTACCACCGACGCCTCTACGCAGTCTT
CGTCCGCCGCAACCACCACTTCACAGCAGTCGTAA
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