Gcaud1714.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1714.t1
Unique NameGcaud1714.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length145
Homology
[Close]
BLAST of Gcaud1714.t1 vs. uniprot
Match: M1V7A6_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V7A6_CYAM1)

HSP 1 Score: 54.3 bits (129), Expect = 1.050e-6
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 0 
Query:   43 EDIKDAVTETQAYISISSKFESFSKAANSAWKLSKKVAWVLGTTSLVLVVPLLYEIDKELGPDAS 107
            ED KD+VTET+ Y  +     S       A+ L  +VAW+  T++LVLVVPL+YEID+EL  +A+
Sbjct:   30 EDWKDSVTETKWYQRVERVASSGYTFVRRAFGLGGRVAWISATSALVLVVPLVYEIDRELDANAA 94
The following BLAST results are available for this feature:
BLAST of Gcaud1714.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
M1V7A6_CYAM11.050e-646.15Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..144
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..96
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 97..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_850_length_17024_cov_4.708026contigNODE_850_length_17024_cov_4.708026:13056..13490 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1714.t1Gcaud1714.t1Gracilaria caudata M_176_S67 malemRNANODE_850_length_17024_cov_4.708026 13056..13490 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1714.t1 ID=Gcaud1714.t1|Name=Gcaud1714.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=145bp
MVPSKPEEHASDDKIPNGSIVNPTATPLPHQWSTLESFQETWEDIKDAVT
ETQAYISISSKFESFSKAANSAWKLSKKVAWVLGTTSLVLVVPLLYEIDK
ELGPDASVSATPPAPASDSAAADATTTDASTQSSSAATTTSQQS*
back to top