Gcaud1583.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1583.t1
Unique NameGcaud1583.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length99
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_993_length_15395_cov_3.930345contigNODE_993_length_15395_cov_3.930345:8897..9193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704648.1
Preferred namePSAO
Max annot lvl2759|Eukaryota
KEGG koko:K14332
KEGG Pathwayko00195,map00195
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009521,GO:0009522,GO:0009536,GO:0009579,GO:0009765,GO:0009767,GO:0009768,GO:0009987,GO:0015979,GO:0016020,GO:0019684,GO:0022900,GO:0032991,GO:0034357,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044425,GO:0044436,GO:0044444,GO:0044464,GO:0055114,GO:0098796
Evalue1.02e-41
EggNOG OGs2B139@1|root,2S09E@2759|Eukaryota
Descriptionphotosystem I subunit
COG categoryS
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1583Gcaud1583Gracilaria caudata M_176_S67 malegeneNODE_993_length_15395_cov_3.930345 8897..9193 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1583.t1.stop1Gcaud1583.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_993_length_15395_cov_3.930345 8897..8899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1583.t1.CDS1Gcaud1583.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_993_length_15395_cov_3.930345 8897..9193 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1583.t1.exon1Gcaud1583.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_993_length_15395_cov_3.930345 8897..9193 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1583.t1.start1Gcaud1583.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_993_length_15395_cov_3.930345 9191..9193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1583.t1Gcaud1583.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_993_length_15395_cov_3.930345 8897..9193 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1583.t1 ID=Gcaud1583.t1|Name=Gcaud1583.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=99bp
MEFEISEGVEFELNPIVFALAFFGWVIPSSIPAGIPLTNGTGLSQAFFAS
IQENLAHWPKGPAIDDPFWLLFALWHVGMFATLIFGTIGYNLRKNPSA*
back to top

spliced messenger RNA

>Gcaud1583.t1 ID=Gcaud1583.t1|Name=Gcaud1583.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=297bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:8897..9193- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTCGAGATCTCGGAGGGCGTTGAATTCGAGCTCAACCCGATTGT
GTTCGCGCTCGCCTTCTTCGGCTGGGTGATTCCGTCCTCTATCCCGGCCG
GCATCCCGCTCACCAACGGTACGGGACTCAGCCAGGCCTTCTTCGCCTCC
ATCCAGGAGAACTTGGCGCACTGGCCGAAGGGCCCCGCCATTGACGACCC
GTTCTGGCTGTTGTTCGCTCTCTGGCACGTGGGAATGTTTGCCACGCTCA
TTTTTGGCACCATTGGCTACAACCTTCGCAAGAACCCCTCCGCCTGA
back to top

protein sequence of Gcaud1583.t1

>Gcaud1583.t1 ID=Gcaud1583.t1|Name=Gcaud1583.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=99bp
MEFEISEGVEFELNPIVFALAFFGWVIPSSIPAGIPLTNGTGLSQAFFAS
IQENLAHWPKGPAIDDPFWLLFALWHVGMFATLIFGTIGYNLRKNPSA*
back to top

mRNA from alignment at NODE_993_length_15395_cov_3.930345:8897..9193-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1583.t1 ID=Gcaud1583.t1|Name=Gcaud1583.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=297bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:8897..9193- (Gracilaria caudata M_176_S67 male)
ATGGAGTTCGAGATCTCGGAGGGCGTTGAATTCGAGCTCAACCCGATTGT
GTTCGCGCTCGCCTTCTTCGGCTGGGTGATTCCGTCCTCTATCCCGGCCG
GCATCCCGCTCACCAACGGTACGGGACTCAGCCAGGCCTTCTTCGCCTCC
ATCCAGGAGAACTTGGCGCACTGGCCGAAGGGCCCCGCCATTGACGACCC
GTTCTGGCTGTTGTTCGCTCTCTGGCACGTGGGAATGTTTGCCACGCTCA
TTTTTGGCACCATTGGCTACAACCTTCGCAAGAACCCCTCCGCCTGA
back to top

Coding sequence (CDS) from alignment at NODE_993_length_15395_cov_3.930345:8897..9193-

>Gcaud1583.t1 ID=Gcaud1583.t1|Name=Gcaud1583.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=297bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:8897..9193- (Gracilaria caudata M_176_S67 male)
ATGGAGTTCGAGATCTCGGAGGGCGTTGAATTCGAGCTCAACCCGATTGT
GTTCGCGCTCGCCTTCTTCGGCTGGGTGATTCCGTCCTCTATCCCGGCCG
GCATCCCGCTCACCAACGGTACGGGACTCAGCCAGGCCTTCTTCGCCTCC
ATCCAGGAGAACTTGGCGCACTGGCCGAAGGGCCCCGCCATTGACGACCC
GTTCTGGCTGTTGTTCGCTCTCTGGCACGTGGGAATGTTTGCCACGCTCA
TTTTTGGCACCATTGGCTACAACCTTCGCAAGAACCCCTCCGCCTGA
back to top