Gcaud1581.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1581.t1
Unique Name	Gcaud1581.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	373

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_993_length_15395_cov_3.930345	contig	NODE_993_length_15395_cov_3.930345:3681..4799 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	886293.Sinac_7544
PFAMs	HATPase_c,HisKA,Hpt,PAS_4,Response_reg
Max annot lvl	203682\|Planctomycetes
Evalue	1.13e-13
EggNOG OGs	COG0784@1\|root,COG2198@1\|root,COG2202@1\|root,COG2203@1\|root,COG5002@1\|root,COG0784@2\|Bacteria,COG2198@2\|Bacteria,COG2202@2\|Bacteria,COG2203@2\|Bacteria,COG5002@2\|Bacteria,2J4YH@203682\|Planctomycetes
Description	His Kinase A (phosphoacceptor
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1581	Gcaud1581	Gracilaria caudata M_176_S67 male	gene	NODE_993_length_15395_cov_3.930345 3681..4799 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1581.t1.start1	Gcaud1581.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_993_length_15395_cov_3.930345 3681..3683 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1581.t1.CDS1	Gcaud1581.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_993_length_15395_cov_3.930345 3681..4799 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1581.t1.exon1	Gcaud1581.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_993_length_15395_cov_3.930345 3681..4799 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1581.t1.stop1	Gcaud1581.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_993_length_15395_cov_3.930345 4797..4799 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1581.t1	Gcaud1581.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_993_length_15395_cov_3.930345 3681..4799 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_993_length_15395_cov_3.930345:3681..4799+
coding sequence from alignment at NODE_993_length_15395_cov_3.930345:3681..4799+

mRNA sequence

>Gcaud1581.t1 ID=Gcaud1581.t1|Name=Gcaud1581.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=373bp
MDATAQLVLDLPSHFLLFGDECVAQPHQSNSLRLPPPSSQTTDLDLSLQL
PETSTLEPHVVTYHSATDVTPSQLGLPNLEVTDALNVSTLTTADADSHSV
DDTSPQHSLTIVAAPPTPTSPPAKPPARPNVSHTRRCRAKLNSNFERLLQ
VLPPPPTGVEARHKAQILQYAIDYYRSVSQHNRQLEMKLALRSPAAMARW
VQSVVASTPNLKDALKSYMAMVCLTNNWKYAELWSPHMRTGSSSVLLRYV
TGALPPTVQGDTLARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLPLL
HDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAF
NMANEIASVFGKAFSQLQSSRF*

spliced messenger RNA

>Gcaud1581.t1 ID=Gcaud1581.t1|Name=Gcaud1581.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:3681..4799+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCACTGCGCAGCTTGTGCTCGATTTGCCGTCGCACTTTCTGCT
GTTCGGGGACGAATGTGTTGCACAGCCGCACCAGTCCAACTCGCTTCGAT
TGCCGCCGCCGTCGTCGCAAACCACCGACCTCGATCTGTCGCTTCAACTG
CCCGAGACGTCAACGCTTGAGCCACACGTCGTCACATATCACTCCGCCAC
CGATGTGACGCCATCACAACTAGGTCTGCCCAATCTCGAAGTCACCGACG
CGCTCAACGTCAGCACACTCACCACGGCAGACGCCGACAGTCATTCCGTC
GACGACACCTCTCCGCAACACTCGCTCACCATCGTCGCCGCTCCACCCAC
GCCCACATCGCCGCCCGCAAAACCGCCTGCGCGCCCCAATGTGTCTCACA
CGCGTCGCTGTCGCGCAAAGCTCAACTCCAATTTTGAACGTCTGCTACAG
GTGTTACCGCCGCCGCCGACCGGGGTAGAGGCGCGCCACAAGGCGCAGAT
TCTGCAGTACGCCATCGACTACTACCGCAGCGTCAGTCAGCACAACAGAC
AGCTCGAGATGAAACTCGCGCTGCGATCACCGGCAGCCATGGCGCGATGG
GTGCAATCGGTTGTGGCATCCACTCCCAACTTGAAGGATGCGCTCAAGTC
GTACATGGCCATGGTCTGTCTCACCAACAACTGGAAGTACGCCGAACTAT
GGTCGCCGCACATGCGCACCGGGTCGTCGTCTGTGCTGCTGCGCTACGTG
ACCGGCGCGCTGCCTCCCACCGTGCAGGGCGACACGTTGGCAAGACTGAG
GAAATACCGCACCCATTCACGCAAGTTCAAGTTTGCGCCGCGAATCGGAG
TGCCGGGACGAGTGTTTCTTACCAGACGACCGGAGTGGCTGCCGCTTCTT
CACGACCCGGTTGCTTTTCTTCGCGCGCCGCATGCGATGCGACAGGGTGT
GGAGGTCACGTTTGCTGTGCCTGTTATTGTGAATGGTAGTGTACAGATGG
TTGTGGAGTTCTTTGATACAGAGCGCAGGGACTATGATCCCAAGGCGTTT
AATATGGCCAATGAGATTGCCAGCGTGTTTGGAAAGGCGTTTAGTCAGTT
GCAGTCATCCCGTTTCTAG

protein sequence of Gcaud1581.t1

>Gcaud1581.t1 ID=Gcaud1581.t1|Name=Gcaud1581.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=373bp
MDATAQLVLDLPSHFLLFGDECVAQPHQSNSLRLPPPSSQTTDLDLSLQL
PETSTLEPHVVTYHSATDVTPSQLGLPNLEVTDALNVSTLTTADADSHSV
DDTSPQHSLTIVAAPPTPTSPPAKPPARPNVSHTRRCRAKLNSNFERLLQ
VLPPPPTGVEARHKAQILQYAIDYYRSVSQHNRQLEMKLALRSPAAMARW
VQSVVASTPNLKDALKSYMAMVCLTNNWKYAELWSPHMRTGSSSVLLRYV
TGALPPTVQGDTLARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLPLL
HDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAF
NMANEIASVFGKAFSQLQSSRF*

mRNA from alignment at NODE_993_length_15395_cov_3.930345:3681..4799+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1581.t1 ID=Gcaud1581.t1|Name=Gcaud1581.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:3681..4799+ (Gracilaria caudata M_176_S67 male)
ATGGACGCCACTGCGCAGCTTGTGCTCGATTTGCCGTCGCACTTTCTGCT
GTTCGGGGACGAATGTGTTGCACAGCCGCACCAGTCCAACTCGCTTCGAT
TGCCGCCGCCGTCGTCGCAAACCACCGACCTCGATCTGTCGCTTCAACTG
CCCGAGACGTCAACGCTTGAGCCACACGTCGTCACATATCACTCCGCCAC
CGATGTGACGCCATCACAACTAGGTCTGCCCAATCTCGAAGTCACCGACG
CGCTCAACGTCAGCACACTCACCACGGCAGACGCCGACAGTCATTCCGTC
GACGACACCTCTCCGCAACACTCGCTCACCATCGTCGCCGCTCCACCCAC
GCCCACATCGCCGCCCGCAAAACCGCCTGCGCGCCCCAATGTGTCTCACA
CGCGTCGCTGTCGCGCAAAGCTCAACTCCAATTTTGAACGTCTGCTACAG
GTGTTACCGCCGCCGCCGACCGGGGTAGAGGCGCGCCACAAGGCGCAGAT
TCTGCAGTACGCCATCGACTACTACCGCAGCGTCAGTCAGCACAACAGAC
AGCTCGAGATGAAACTCGCGCTGCGATCACCGGCAGCCATGGCGCGATGG
GTGCAATCGGTTGTGGCATCCACTCCCAACTTGAAGGATGCGCTCAAGTC
GTACATGGCCATGGTCTGTCTCACCAACAACTGGAAGTACGCCGAACTAT
GGTCGCCGCACATGCGCACCGGGTCGTCGTCTGTGCTGCTGCGCTACGTG
ACCGGCGCGCTGCCTCCCACCGTGCAGGGCGACACGTTGGCAAGACTGAG
GAAATACCGCACCCATTCACGCAAGTTCAAGTTTGCGCCGCGAATCGGAG
TGCCGGGACGAGTGTTTCTTACCAGACGACCGGAGTGGCTGCCGCTTCTT
CACGACCCGGTTGCTTTTCTTCGCGCGCCGCATGCGATGCGACAGGGTGT
GGAGGTCACGTTTGCTGTGCCTGTTATTGTGAATGGTAGTGTACAGATGG
TTGTGGAGTTCTTTGATACAGAGCGCAGGGACTATGATCCCAAGGCGTTT
AATATGGCCAATGAGATTGCCAGCGTGTTTGGAAAGGCGTTTAGTCAGTT
GCAGTCATCCCGTTTCTAG

Coding sequence (CDS) from alignment at NODE_993_length_15395_cov_3.930345:3681..4799+

>Gcaud1581.t1 ID=Gcaud1581.t1|Name=Gcaud1581.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1119bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:3681..4799+ (Gracilaria caudata M_176_S67 male)
ATGGACGCCACTGCGCAGCTTGTGCTCGATTTGCCGTCGCACTTTCTGCT
GTTCGGGGACGAATGTGTTGCACAGCCGCACCAGTCCAACTCGCTTCGAT
TGCCGCCGCCGTCGTCGCAAACCACCGACCTCGATCTGTCGCTTCAACTG
CCCGAGACGTCAACGCTTGAGCCACACGTCGTCACATATCACTCCGCCAC
CGATGTGACGCCATCACAACTAGGTCTGCCCAATCTCGAAGTCACCGACG
CGCTCAACGTCAGCACACTCACCACGGCAGACGCCGACAGTCATTCCGTC
GACGACACCTCTCCGCAACACTCGCTCACCATCGTCGCCGCTCCACCCAC
GCCCACATCGCCGCCCGCAAAACCGCCTGCGCGCCCCAATGTGTCTCACA
CGCGTCGCTGTCGCGCAAAGCTCAACTCCAATTTTGAACGTCTGCTACAG
GTGTTACCGCCGCCGCCGACCGGGGTAGAGGCGCGCCACAAGGCGCAGAT
TCTGCAGTACGCCATCGACTACTACCGCAGCGTCAGTCAGCACAACAGAC
AGCTCGAGATGAAACTCGCGCTGCGATCACCGGCAGCCATGGCGCGATGG
GTGCAATCGGTTGTGGCATCCACTCCCAACTTGAAGGATGCGCTCAAGTC
GTACATGGCCATGGTCTGTCTCACCAACAACTGGAAGTACGCCGAACTAT
GGTCGCCGCACATGCGCACCGGGTCGTCGTCTGTGCTGCTGCGCTACGTG
ACCGGCGCGCTGCCTCCCACCGTGCAGGGCGACACGTTGGCAAGACTGAG
GAAATACCGCACCCATTCACGCAAGTTCAAGTTTGCGCCGCGAATCGGAG
TGCCGGGACGAGTGTTTCTTACCAGACGACCGGAGTGGCTGCCGCTTCTT
CACGACCCGGTTGCTTTTCTTCGCGCGCCGCATGCGATGCGACAGGGTGT
GGAGGTCACGTTTGCTGTGCCTGTTATTGTGAATGGTAGTGTACAGATGG
TTGTGGAGTTCTTTGATACAGAGCGCAGGGACTATGATCCCAAGGCGTTT
AATATGGCCAATGAGATTGCCAGCGTGTTTGGAAAGGCGTTTAGTCAGTT
GCAGTCATCCCGTTTCTAG