Gcaud1581.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1581.t1
Unique NameGcaud1581.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length373
Homology
BLAST of Gcaud1581.t1 vs. uniprot
Match: A0A2V3J090_9FLOR (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J090_9FLOR)

HSP 1 Score: 367 bits (941), Expect = 3.490e-122
Identity = 177/245 (72.24%), Postives = 205/245 (83.67%), Query Frame = 0
Query:  128 RPNVSHTRRCRAKLNSNFERLLQVLPPPPTGVEARHKAQILQYAIDYYRSVSQHNRQLEMKLALRSPAAMARWVQSVVASTPNLKDALKSYMAMVCLTNNWKYAELWSPHMRTGSSSVLLRYVTGALPPTVQGDTLARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLPLLHDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAFNMANEIASVFGKAFSQLQSSRF 372
            RPNVSHTRRCRAKLN+NF+RLLQVLP PP GVE +HKAQILQYAID+YR V   N +LEM LAL S + M RWVQSVV ++PNL+D+LKS+MAM+CLT NWKYAELWSPH  T SSSV L Y +GALPPTV+G+ L RL+ YR  SRK+ FAPR GVPGRVFLT RPEWLPLL+DPVAF RAPHA+R  VEVTFAVPV+VNGSV+MVV+F+DT RRDY+P   NM NEIA++FGKAF+ + SS F
Sbjct:  137 RPNVSHTRRCRAKLNTNFDRLLQVLPKPPPGVEVKHKAQILQYAIDHYRHVRCKNVKLEMTLALSSRSHMHRWVQSVVHTSPNLRDSLKSFMAMICLTKNWKYAELWSPHTPTDSSSVALTYASGALPPTVEGEELHRLKAYRVKSRKYTFAPRSGVPGRVFLTMRPEWLPLLNDPVAFPRAPHAVRNRVEVTFAVPVVVNGSVKMVVQFYDTYRRDYEPATLNMTNEIAAMFGKAFTAINSSPF 381          
BLAST of Gcaud1581.t1 vs. uniprot
Match: A0A1X6PIG4_PORUM (BHLH domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIG4_PORUM)

HSP 1 Score: 176 bits (445), Expect = 8.390e-46
Identity = 100/311 (32.15%), Postives = 150/311 (48.23%), Query Frame = 0
Query:  132 SHTRRCRAKLNSNFERLLQVLPPPPTGVEARHKAQILQYAIDYYRSVSQHNRQLEMKLALRSPAAMARWVQSVVASTPNLKDALKSYMAMVCLTNNWKYAELWSPH--------------------MRTGSSSVLLRYVTGALPPTV----------------------------------------------------QGDTLARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLPLLHDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAFNMANEIASVFGKAFSQLQSS 370
            SHTR+CRAK+N+ F+ LL +LPP P   + +HKAQIL Y I  Y+ +     QLE +LAL + A +A WV +VVAS+  L +AL+ Y+ ++ +   ++YAELW P                     + +G S VL R +   LP  V                                                    + +T   +  +R  +      PR+G+PGRV+ + RPEWLP+L DP AF+RA +A    + +  AVPV++ G V  V  FFDT +R YD     +A+++A++ G AF   ++S
Sbjct:  345 SHTRKCRAKVNTKFDELLTLLPPHPDSFQVKHKAQILDYTIHMYKRIQARKNQLEAELALSTRANLAAWVDTVVASSRTLPEALRPYLHLIAVQKRFRYAELWLPQPTKAEGMAAAKKAGANASLSLPSGDSIVLTRSMALVLPAPVPTAGQTDELSVGLGAPTGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEENTTRAIEAFRDATASCVVPPRVGMPGRVYCSMRPEWLPMLSDPHAFIRAEYAANSKLSMCLAVPVLLCGRVAAVAAFFDTGKRPYDASVVGLAHDVANLVGNAFGAAKAS 655          
BLAST of Gcaud1581.t1 vs. uniprot
Match: A0A7S1TET1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TET1_9RHOD)

HSP 1 Score: 169 bits (428), Expect = 4.170e-44
Identity = 90/244 (36.89%), Postives = 132/244 (54.10%), Query Frame = 0
Query:  132 SHTRRCRAKLNSNFERLLQVLPPPPTGVEARHKAQILQYAIDYYRSVSQHNRQLEMKLALRSPAAMARWVQSVVASTPNLKDALKSYMAMVCLTNNWKYAELWSP---------HMRTGSSSVLLRYVTGALPPTVQGDTLA--RLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLPLLHDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAFNMANEIASVFGKAF 364
            SHTRRCR K+N  F+ L+  LPPPPTG E +HKAQIL Y+I   + ++     LE +LAL +   +  WV  VV    +  DA+  ++ M+C    WK AELW P          +    +   L+ +  +    ++ D     R+ ++   SR+FKF P  G PGRV+ T RPEWL  L D   F RA  A + G+    ++P ++NG V+ VV  +D E+R+ D    ++A +IA + G AF
Sbjct:  269 SHTRRCREKVNEKFQTLMNELPPPPTGTEIKHKAQILDYSIRVLKDLASRKAALESELALSNRRNLLGWVDRVVNDAEDFPDAINPFLKMMCSKKAWKCAELWVPVEERVMVSCPLPQSETPTRLKLLRASFHENLEQDPPRHHRIHEFIDESRRFKFTPTCGSPGRVYSTMRPEWLHDLSDEQVFPRAELASKAGLVTCLSIPFLINGRVRGVVCLYDDEKRECDMGDLDLAFDIAILIGNAF 512          
BLAST of Gcaud1581.t1 vs. uniprot
Match: A0A2V3IV04_9FLOR (GAF domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV04_9FLOR)

HSP 1 Score: 166 bits (419), Expect = 2.420e-43
Identity = 88/239 (36.82%), Postives = 133/239 (55.65%), Query Frame = 0
Query:  131 VSHTRRCRAKLNSNFERLLQVLPPPPTGVEARHKAQILQYAIDYYRSVSQHNRQLEMKLALRSPAAMARWVQSVVASTPNLKDALKSYMAMVCLTNNWKYAELWSPHMRTGS------SSVLLRYVTGALPPTVQGDTLARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLPLLHDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAFNMANEIASVFGKA 363
            +SHT+ CR +LNS FERL + LPP P+GVE +HKAQ+L YAI   + + +   QLE++LA+ S  A   W+  +V       +A +  M +      WK+AELW+   +T S      +SV LR+ +     T     L  L+ +   S K+ F  + GVPGRV+ + RPEW+  L +   F R+  A + G++V  AVPV + G ++ V+ F+DT+ R YD +   +A  +A   G A
Sbjct:  210 LSHTKMCRDRLNSMFERLKRTLPPAPSGVEVKHKAQVLDYAILVLKGMVERTTQLEIELAVSSNKATMEWISKLVDRVDTFPNAAEEVMQLFSRRRGWKHAELWTTSRKTASPEVDSDNSVTLRFCSSICSETTNERKL-NLQTFSKASEKYAFKAQHGVPGRVWSSMRPEWVTGLDNSKNFHRSSLAKKHGLKVCLAVPVTITGKIEAVMCFYDTKHRPYDTQCLELAMNLAWALGNA 447          
BLAST of Gcaud1581.t1 vs. uniprot
Match: R7QKH2_CHOCR (GAF domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKH2_CHOCR)

HSP 1 Score: 161 bits (408), Expect = 1.440e-40
Identity = 88/239 (36.82%), Postives = 126/239 (52.72%), Query Frame = 0
Query:  131 VSHTRRCRAKLNSNFERLLQVLPPPPTGVEARHKAQILQYAIDYYRSVSQHNRQLEMKLALRSPAAMARWVQSVVASTPNLKDALKSYMAMVCLTNNWKYAELWSPHMRTG------SSSVLLRYVTGALPPTVQGDTLARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLPLLHDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAFNMANEIASVFGKA 363
            +SHT+ CR +LN+ FERL   LPP PTGVE +HKAQ+L YAI     +     QLE++LA+ S  A   W+  +VA T +  +A +  M +     +WK+AELW    R+         S +L   T ++   V G   + L ++   S  + F    GV GRV+   RPEW+  L DP  F R   A   GV+V  AVPV + G ++ V+ F+D + R YD +   +A  +A   G A
Sbjct:  422 LSHTKMCRDRLNNMFERLRHTLPPAPTGVEVKHKAQVLDYAIAVLHGMVDRTAQLEIELAVSSNKATMDWISKLVARTESFPEAAEEVMRLFARRRSWKHAELWVAGKRSMPPDANLEDSTILTLCT-SISNDVYGQGASSLDRFSKQSESYSFKANEGVQGRVWSAMRPEWVTGLTDPKNFKRCSLAREHGVKVCLAVPVTITGKIEAVMCFYDVKHRPYDTQCRELAMRLAWALGNA 659          
BLAST of Gcaud1581.t1 vs. uniprot
Match: A0A2V3J1B9_9FLOR (GAF domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1B9_9FLOR)

HSP 1 Score: 132 bits (332), Expect = 1.600e-30
Identity = 94/275 (34.18%), Postives = 133/275 (48.36%), Query Frame = 0
Query:  106 QHSLTIVAAPPTPTSPPAKPPARPNVSHTRRCRAKLNSNFERLLQVLPPPPTGVEARHKAQILQYAIDYYRSVSQHNRQLEMKLALRSPAAMARWVQSVV------------ASTPNLKDALKSYMAMVCLTNNWKYAELWSPHMRTGSSSVLLRYVTGALPPTVQGDTLARLRKYRTHSR-KFKFAPRI--GVPGRVFLTRRPEWL-PLLHDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAFNMANEIASVFGKAF 364
            Q+S +I  AP +P +     PA P  SHTRRCR K+   FE LL+VLPPP  GVE RHKAQIL Y I+ +RS+      L   +AL S   + +W  S +            A +P++   L  +M   C+ N+W YAE W     T  +++   +V          +    L  + T S+ ++  A  I  GV  R   T+RPEWL  +  D   F RA  A +  V++  AVPV+       V+ F  T      P+ F+ A E+  +FG AF
Sbjct:  206 QNSSSIHVAPNSPGT-----PAEPPKSHTRRCREKVTRQFEHLLEVLPPPSRGVEVRHKAQILDYTINVFRSLLARRTFLHTHIALASNHTLRQWANSTLLRASAAVKSDSFAQSPSIASLLHPFMRFYCVKNSWSYAETWILTPDTKHAALHSCFVNSD-----DSNVSKNLDAFATASKARYGAASEIVSGVVSRARQTKRPEWLVDIADDQCVFDRAALAAQHDVQIALAVPVVAENMCLAVIVFAHTT-----PRTFSAA-EVDQLFGFAF 464          
BLAST of Gcaud1581.t1 vs. uniprot
Match: A0A1X6NUF4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUF4_PORUM)

HSP 1 Score: 96.3 bits (238), Expect = 6.560e-18
Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = 0
Query:  264 ARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLP-LLHDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAFNMANEIASVFGKAFSQLQS 369
            A L ++   SR ++F P++GVPGRV+ T RPEWL  L  D   FLRAP A R G+ V  AVPV V+GSV  VV F+DT  R +DP  +++A ++    G A+   +S
Sbjct:  877 AALERFSIESRAWRFRPKVGVPGRVWSTMRPEWLASLADDRGTFLRAPLARRFGLRVCVAVPVTVSGSVAAVVAFYDTVARPFDPACYDLAVKLTCALGNAYGAKRS 983          
BLAST of Gcaud1581.t1 vs. uniprot
Match: A0A3D1PJE2_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium UBA11049 TaxID=2055787 RepID=A0A3D1PJE2_9CYAN)

HSP 1 Score: 86.7 bits (213), Expect = 9.210e-15
Identity = 55/189 (29.10%), Postives = 94/189 (49.74%), Query Frame = 0
Query:  178 VSQHNRQLEMKLALRSPA-AMARWVQSV---VASTPNLKDALKSYMAMVCLTNNWKYAELWSPHMRTGSSSVLLRYVTGALPPTVQGDTLARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLP-LLHDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAFNMANEIASVFG 361
            +SQ N QL+ K+A R  A   AR++Q++   ++ + +   AL   +  +C    W++ E W P+    S+S  L +     P          + K+R  S +F FAP  G PGRV+L+++PEW+  +  +P A +R   A   G +    +P+I    V  V+ FF  E R  D +   + + +A++ G
Sbjct:  126 LSQANEQLQSKIAERQRADEEARFLQTITQAISESADFHSALDITLQNICEFAGWEFGEAWIPN----SNSQKLEHS----PAWYSNXXXXNVEKFRKFSEEFTFAPATGQPGRVWLSKQPEWIQDISTEPEAVVRRQLATAAGFKTGLGIPIIERDRVLAVLIFFSLESRQEDKRLVEIISTVATLLG 306          
BLAST of Gcaud1581.t1 vs. uniprot
Match: A0A2V9LHI9_9BACT (Hybrid sensor histidine kinase/response regulator n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9LHI9_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 1.370e-14
Identity = 51/184 (27.72%), Postives = 89/184 (48.37%), Query Frame = 0
Query:  186 EMKLALRSPAAMARWVQSVVASTPNLKDALKSYMAMVCLTNNWKYAELWSPHMRTGSSSVLLRYVTGALPPTVQGDTLARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLPLLHDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAFNMANEIASVFGKAFSQLQS 369
            E +LAL+   A+A      +A +  L +A +  +  +C    W++A +W   ++T     +LR +     P  Q        ++   SR+  FAP  G+PGRV+ T +P W+P + +   F RA  A R+G+  +F  P++       V+EFF +E R  D     M + I S  G+   ++++
Sbjct:  163 ERRLALQYATALA------LAESTTLGEATRRILQAICQALGWEHAAVWGVDLKTN----VLRLIETWQAPASQ------FAEFGAASRQITFAPGAGLPGRVWSTGQPVWIPDVVEDANFPRAQIAAREGLHSSFGFPIVFGSETTGVMEFFSSEIRQPDEDLLKMLSSIGSQIGQVMERMRA 330          
BLAST of Gcaud1581.t1 vs. uniprot
Match: A0A1F2R4Y1_9BACT (PAS domain-containing protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 TaxID=1797181 RepID=A0A1F2R4Y1_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 3.370e-14
Identity = 52/159 (32.70%), Postives = 75/159 (47.17%), Query Frame = 0
Query:  204 VVASTPNLKDALKSYMAMVCLTNNWKYAELWSPHMRTGSSSVLLRYVTGALPPTVQGDTLARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLPLLHDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAFNMANEIASVFGK 362
            V+A+  +L DA    +  +C T NW++A +W    R    + +LR V     P V      R  K+   SR   FAP IG+PG V+ + RP W+P +     F RAP A  +G    F  P+++   V  V+EFF  E R+ D     M   I    G+
Sbjct:   27 VLATAAHLSDATPRILEAICTTLNWEHATVW----RVDRQASVLRCVEIWHQPDV------RFAKFEALSRGMTFAPGIGLPGSVWSSGRPLWIPDVVHHDNFPRAPIAAAEGPHAAFGFPIMLGPEVLGVMEFFSREIREPDEALLAMLGTIGHQIGQ 175          
The following BLAST results are available for this feature:
BLAST of Gcaud1581.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J090_9FLOR3.490e-12272.24BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
A0A1X6PIG4_PORUM8.390e-4632.15BHLH domain-containing protein n=1 Tax=Porphyra um... [more]
A0A7S1TET1_9RHOD4.170e-4436.89Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A2V3IV04_9FLOR2.420e-4336.82GAF domain-containing protein n=1 Tax=Gracilariops... [more]
R7QKH2_CHOCR1.440e-4036.82GAF domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A2V3J1B9_9FLOR1.600e-3034.18GAF domain-containing protein n=1 Tax=Gracilariops... [more]
A0A1X6NUF4_PORUM6.560e-1845.79Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A3D1PJE2_9CYAN9.210e-1529.10Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
A0A2V9LHI9_9BACT1.370e-1427.72Hybrid sensor histidine kinase/response regulator ... [more]
A0A1F2R4Y1_9BACT3.370e-1432.70PAS domain-containing protein n=1 Tax=Acidobacteri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029016GAF-like domain superfamilyGENE3D3.30.450.40coord: 199..371
e-value: 4.1E-9
score: 38.4
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 130..198
e-value: 1.6E-6
score: 29.9
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 134..191
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 125..178
score: 9.718072
NoneNo IPR availableSUPERFAMILY55781GAF domain-likecoord: 274..368

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_993_length_15395_cov_3.930345contigNODE_993_length_15395_cov_3.930345:3681..4799 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1581.t1Gcaud1581.t1Gracilaria caudata M_176_S67 malemRNANODE_993_length_15395_cov_3.930345 3681..4799 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1581.t1 ID=Gcaud1581.t1|Name=Gcaud1581.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=373bp
MDATAQLVLDLPSHFLLFGDECVAQPHQSNSLRLPPPSSQTTDLDLSLQL
PETSTLEPHVVTYHSATDVTPSQLGLPNLEVTDALNVSTLTTADADSHSV
DDTSPQHSLTIVAAPPTPTSPPAKPPARPNVSHTRRCRAKLNSNFERLLQ
VLPPPPTGVEARHKAQILQYAIDYYRSVSQHNRQLEMKLALRSPAAMARW
VQSVVASTPNLKDALKSYMAMVCLTNNWKYAELWSPHMRTGSSSVLLRYV
TGALPPTVQGDTLARLRKYRTHSRKFKFAPRIGVPGRVFLTRRPEWLPLL
HDPVAFLRAPHAMRQGVEVTFAVPVIVNGSVQMVVEFFDTERRDYDPKAF
NMANEIASVFGKAFSQLQSSRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029016GAF-like_dom_sf
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom