Gcaud1580.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1580.t1
Unique Name	Gcaud1580.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	313

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_993_length_15395_cov_3.930345	contig	NODE_993_length_15395_cov_3.930345:484..1422 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6087.XP_002165851.1
PFAMs	RNase_Zc3h12a
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K18668
Evalue	6.73e-05
EggNOG OGs	KOG3777@1\|root,KOG3777@2759\|Eukaryota,38F0B@33154\|Opisthokonta,3BAC8@33208\|Metazoa
Description	zinc finger CCCH-type containing
COG category	S
BRITE	ko00000,ko01000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1580	Gcaud1580	Gracilaria caudata M_176_S67 male	gene	NODE_993_length_15395_cov_3.930345 484..1422 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1580.t1.start1	Gcaud1580.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_993_length_15395_cov_3.930345 484..486 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1580.t1.CDS1	Gcaud1580.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_993_length_15395_cov_3.930345 484..1422 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1580.t1.exon1	Gcaud1580.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_993_length_15395_cov_3.930345 484..1422 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1580.t1.stop1	Gcaud1580.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_993_length_15395_cov_3.930345 1420..1422 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1580.t1	Gcaud1580.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_993_length_15395_cov_3.930345 484..1422 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_993_length_15395_cov_3.930345:484..1422+
coding sequence from alignment at NODE_993_length_15395_cov_3.930345:484..1422+

mRNA sequence

>Gcaud1580.t1 ID=Gcaud1580.t1|Name=Gcaud1580.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=313bp
MKLAYEASLQAPLYSCTEEASVLSSVEDDVVSVSSSCDSRVGVPPLDLSF
SSVSEEADSGDDSPLLAGDSFLSKRSKRGAKVRFCDTLQLIPSTEQLKKQ
ADMAATERAQLSRCVGDLASQLAQLQAQLRQLKQGAAHDSRAELLQSGTA
SAKRRRVVIDGDSVARAYGKGKFKAQGISVALQYYGSRGFHAVAVVSKRM
TECGKSSRERSRDDVLTQLIDDGLVEVSCSEGKRQEFIVRYALDHNALVV
CNARLRAAAGTGTRCSKRELRRIQAFVDSHRVAFMFVANEFVPTATSLRP
SQSSECLRSDGL*

spliced messenger RNA

>Gcaud1580.t1 ID=Gcaud1580.t1|Name=Gcaud1580.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=939bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:484..1422+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTGCTTACGAAGCGTCGTTACAGGCGCCGTTGTACAGTTGTAC
GGAGGAGGCTTCCGTGCTATCTTCTGTGGAAGACGATGTGGTATCGGTAT
CATCTTCGTGCGATTCTCGCGTGGGGGTACCTCCGTTGGATCTGAGTTTC
TCCAGCGTGTCCGAAGAGGCCGATTCAGGCGATGATTCGCCGCTGTTGGC
GGGCGATTCTTTCCTGTCTAAACGAAGCAAACGAGGCGCAAAGGTGCGCT
TTTGTGACACGCTGCAGCTGATTCCAAGCACGGAGCAGCTCAAGAAACAG
GCCGATATGGCCGCCACGGAACGGGCGCAGCTGTCGCGATGCGTGGGCGA
TCTTGCATCGCAACTGGCTCAGCTGCAAGCGCAGCTACGACAACTGAAGC
AGGGTGCGGCGCATGACTCTCGTGCAGAGCTGCTTCAAAGTGGCACGGCG
AGCGCAAAGCGCAGAAGGGTGGTGATTGATGGCGATAGTGTGGCGCGCGC
GTACGGCAAAGGAAAGTTCAAAGCTCAGGGAATCTCGGTGGCGTTACAGT
ACTATGGCAGCCGTGGCTTTCACGCGGTGGCGGTGGTTTCGAAGCGCATG
ACTGAATGTGGCAAATCATCGCGAGAGCGTTCTCGAGACGATGTGCTGAC
GCAACTTATTGACGACGGGTTGGTTGAAGTGAGCTGCAGTGAGGGCAAAC
GACAGGAGTTTATTGTGAGATACGCGCTGGATCACAATGCGCTGGTGGTG
TGTAACGCGCGCTTGCGAGCGGCGGCTGGGACTGGGACGAGATGCTCCAA
GCGCGAGCTGCGCAGAATACAGGCGTTTGTGGACTCGCATCGGGTGGCGT
TCATGTTTGTTGCAAACGAGTTTGTGCCGACGGCGACGTCGTTGCGGCCT
TCTCAATCTTCGGAGTGTCTGCGCTCGGATGGGTTGTAA

protein sequence of Gcaud1580.t1

>Gcaud1580.t1 ID=Gcaud1580.t1|Name=Gcaud1580.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=313bp
MKLAYEASLQAPLYSCTEEASVLSSVEDDVVSVSSSCDSRVGVPPLDLSF
SSVSEEADSGDDSPLLAGDSFLSKRSKRGAKVRFCDTLQLIPSTEQLKKQ
ADMAATERAQLSRCVGDLASQLAQLQAQLRQLKQGAAHDSRAELLQSGTA
SAKRRRVVIDGDSVARAYGKGKFKAQGISVALQYYGSRGFHAVAVVSKRM
TECGKSSRERSRDDVLTQLIDDGLVEVSCSEGKRQEFIVRYALDHNALVV
CNARLRAAAGTGTRCSKRELRRIQAFVDSHRVAFMFVANEFVPTATSLRP
SQSSECLRSDGL*

mRNA from alignment at NODE_993_length_15395_cov_3.930345:484..1422+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1580.t1 ID=Gcaud1580.t1|Name=Gcaud1580.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=939bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:484..1422+ (Gracilaria caudata M_176_S67 male)
ATGAAGCTTGCTTACGAAGCGTCGTTACAGGCGCCGTTGTACAGTTGTAC
GGAGGAGGCTTCCGTGCTATCTTCTGTGGAAGACGATGTGGTATCGGTAT
CATCTTCGTGCGATTCTCGCGTGGGGGTACCTCCGTTGGATCTGAGTTTC
TCCAGCGTGTCCGAAGAGGCCGATTCAGGCGATGATTCGCCGCTGTTGGC
GGGCGATTCTTTCCTGTCTAAACGAAGCAAACGAGGCGCAAAGGTGCGCT
TTTGTGACACGCTGCAGCTGATTCCAAGCACGGAGCAGCTCAAGAAACAG
GCCGATATGGCCGCCACGGAACGGGCGCAGCTGTCGCGATGCGTGGGCGA
TCTTGCATCGCAACTGGCTCAGCTGCAAGCGCAGCTACGACAACTGAAGC
AGGGTGCGGCGCATGACTCTCGTGCAGAGCTGCTTCAAAGTGGCACGGCG
AGCGCAAAGCGCAGAAGGGTGGTGATTGATGGCGATAGTGTGGCGCGCGC
GTACGGCAAAGGAAAGTTCAAAGCTCAGGGAATCTCGGTGGCGTTACAGT
ACTATGGCAGCCGTGGCTTTCACGCGGTGGCGGTGGTTTCGAAGCGCATG
ACTGAATGTGGCAAATCATCGCGAGAGCGTTCTCGAGACGATGTGCTGAC
GCAACTTATTGACGACGGGTTGGTTGAAGTGAGCTGCAGTGAGGGCAAAC
GACAGGAGTTTATTGTGAGATACGCGCTGGATCACAATGCGCTGGTGGTG
TGTAACGCGCGCTTGCGAGCGGCGGCTGGGACTGGGACGAGATGCTCCAA
GCGCGAGCTGCGCAGAATACAGGCGTTTGTGGACTCGCATCGGGTGGCGT
TCATGTTTGTTGCAAACGAGTTTGTGCCGACGGCGACGTCGTTGCGGCCT
TCTCAATCTTCGGAGTGTCTGCGCTCGGATGGGTTGTAA

Coding sequence (CDS) from alignment at NODE_993_length_15395_cov_3.930345:484..1422+

>Gcaud1580.t1 ID=Gcaud1580.t1|Name=Gcaud1580.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=939bp|location=Sequence derived from alignment at NODE_993_length_15395_cov_3.930345:484..1422+ (Gracilaria caudata M_176_S67 male)
ATGAAGCTTGCTTACGAAGCGTCGTTACAGGCGCCGTTGTACAGTTGTAC
GGAGGAGGCTTCCGTGCTATCTTCTGTGGAAGACGATGTGGTATCGGTAT
CATCTTCGTGCGATTCTCGCGTGGGGGTACCTCCGTTGGATCTGAGTTTC
TCCAGCGTGTCCGAAGAGGCCGATTCAGGCGATGATTCGCCGCTGTTGGC
GGGCGATTCTTTCCTGTCTAAACGAAGCAAACGAGGCGCAAAGGTGCGCT
TTTGTGACACGCTGCAGCTGATTCCAAGCACGGAGCAGCTCAAGAAACAG
GCCGATATGGCCGCCACGGAACGGGCGCAGCTGTCGCGATGCGTGGGCGA
TCTTGCATCGCAACTGGCTCAGCTGCAAGCGCAGCTACGACAACTGAAGC
AGGGTGCGGCGCATGACTCTCGTGCAGAGCTGCTTCAAAGTGGCACGGCG
AGCGCAAAGCGCAGAAGGGTGGTGATTGATGGCGATAGTGTGGCGCGCGC
GTACGGCAAAGGAAAGTTCAAAGCTCAGGGAATCTCGGTGGCGTTACAGT
ACTATGGCAGCCGTGGCTTTCACGCGGTGGCGGTGGTTTCGAAGCGCATG
ACTGAATGTGGCAAATCATCGCGAGAGCGTTCTCGAGACGATGTGCTGAC
GCAACTTATTGACGACGGGTTGGTTGAAGTGAGCTGCAGTGAGGGCAAAC
GACAGGAGTTTATTGTGAGATACGCGCTGGATCACAATGCGCTGGTGGTG
TGTAACGCGCGCTTGCGAGCGGCGGCTGGGACTGGGACGAGATGCTCCAA
GCGCGAGCTGCGCAGAATACAGGCGTTTGTGGACTCGCATCGGGTGGCGT
TCATGTTTGTTGCAAACGAGTTTGTGCCGACGGCGACGTCGTTGCGGCCT
TCTCAATCTTCGGAGTGTCTGCGCTCGGATGGGTTGTAA