Gcaud1580.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1580.t1
Unique NameGcaud1580.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length313
Homology
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BLAST of Gcaud1580.t1 vs. uniprot
Match: A0A2V3INA8_9FLOR (RNase NYN domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INA8_9FLOR)

HSP 1 Score: 247 bits (631), Expect = 1.490e-75
Identity = 152/320 (47.50%), Postives = 207/320 (64.69%), Query Frame = 0 
Query:    1 MKLAYEASLQAPLYSCTEEASVLSSVEDDVVSVSSSCDSRV--GVPPLDLSFSSVSEEADSGDDSPLLAGDSFLSKRSKRGAKVRFCDTLQLIPSTEQLKKQADMAATERAQLSRCVGDLASQLAQLQAQLRQLKQG---AAHDSRA--------ELLQSGTASAKRRRVVIDGDSVARAYGKGKFKAQGISVALQYYGSRGFHAVAVVSKRMTECGKSSRERSRDDVLTQLIDDGLVEVSCSEGKRQEFIVRYALDHNALVVCNARLRAAAGTGTRCSKRELRRIQAFVDSHRVAFMFVANEFVPTATSLRPSQSSECL 307
            +++ YEAS   PL+   +E+SVLSS++DD  S+ ++    +      LD SFSSVSEE D+ D SP        S  SKR  KVRF D L LIP+T+QLK   D AA ERAQLS  + DL+ Q+++LQ +LR +K+    A H S           L  S ++ AKR+RVV+D  SVA AYG G+F+ QGI+VALQYY +R  HAVA+ SKR  +   SS + SRD  L QLI  GL+ V+ S  +RQ+FI+RY+LDHNA +V N  +R    +  + SKR+ R IQ+F+DSHR+ FMFVAN+FVP + S+R S+S++C+
Sbjct:  126 VQIKYEASTAPPLHLALDESSVLSSIQDDTPSIPTTLAKALTSSSSALDSSFSSVSEEEDAIDHSP--------STHSKRKPKVRFTDKLHLIPTTQQLKSDLDNAAIERAQLSNSLTDLSVQVSRLQRELRHVKKSLNLANHSSPCTSFVQPVNHLSMSSSSCAKRQRVVLDAHSVACAYGNGQFRPQGIAVALQYYHNRDIHAVAIASKRAIDTALSSGKSSRDSALQQLIHTGLLAVTNSHSRRQDFIIRYSLDHNAYIVSNESMRYKPSS-KQSSKRDQRFIQSFLDSHRIQFMFVANDFVPISPSIRQSKSTDCI 436
The following BLAST results are available for this feature:
BLAST of Gcaud1580.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3INA8_9FLOR1.490e-7547.50RNase NYN domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..135
NoneNo IPR availableGENE3D3.40.50.11980coord: 154..308
e-value: 2.3E-22
score: 81.4
IPR021869Ribonuclease Zc3h12a-like, NYN domainPFAMPF11977RNase_Zc3h12acoord: 154..294
e-value: 9.1E-16
score: 57.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_993_length_15395_cov_3.930345contigNODE_993_length_15395_cov_3.930345:484..1422 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1580.t1Gcaud1580.t1Gracilaria caudata M_176_S67 malemRNANODE_993_length_15395_cov_3.930345 484..1422 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1580.t1 ID=Gcaud1580.t1|Name=Gcaud1580.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=313bp
MKLAYEASLQAPLYSCTEEASVLSSVEDDVVSVSSSCDSRVGVPPLDLSF
SSVSEEADSGDDSPLLAGDSFLSKRSKRGAKVRFCDTLQLIPSTEQLKKQ
ADMAATERAQLSRCVGDLASQLAQLQAQLRQLKQGAAHDSRAELLQSGTA
SAKRRRVVIDGDSVARAYGKGKFKAQGISVALQYYGSRGFHAVAVVSKRM
TECGKSSRERSRDDVLTQLIDDGLVEVSCSEGKRQEFIVRYALDHNALVV
CNARLRAAAGTGTRCSKRELRRIQAFVDSHRVAFMFVANEFVPTATSLRP
SQSSECLRSDGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021869RNase_Zc3h12_NYN