Gcaud1578.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1578.t1
Unique NameGcaud1578.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length81
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2866_length_4534_cov_3.293495contigNODE_2866_length_4534_cov_3.293495:3125..3464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002506337.1
PFAMszf-CSL
Max annot lvl3041|Chlorophyta
KEGG koko:K15455
Evalue2.84e-26
EggNOG OGsCOG5216@1|root,KOG2923@2759|Eukaryota,37W44@33090|Viridiplantae,34IKH@3041|Chlorophyta
DescriptionCSL zinc finger
COG categoryS
BRITEko00000,ko03012,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1578Gcaud1578Gracilaria caudata M_176_S67 malegeneNODE_2866_length_4534_cov_3.293495 3125..3464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1578.t1Gcaud1578.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2866_length_4534_cov_3.293495 3125..3464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1578.t1.CDS1Gcaud1578.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2866_length_4534_cov_3.293495 3125..3127 +
Gcaud1578.t1.CDS2Gcaud1578.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2866_length_4534_cov_3.293495 3225..3464 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1578.t1.exon1Gcaud1578.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2866_length_4534_cov_3.293495 3125..3127 +
Gcaud1578.t1.exon2Gcaud1578.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2866_length_4534_cov_3.293495 3225..3464 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1578.t1.start1Gcaud1578.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2866_length_4534_cov_3.293495 3125..3127 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1578.t1.intron1Gcaud1578.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2866_length_4534_cov_3.293495 3128..3224 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1578.t1.stop1Gcaud1578.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2866_length_4534_cov_3.293495 3462..3464 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1578.t1 ID=Gcaud1578.t1|Name=Gcaud1578.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=81bp
MTLYDEVDLEDMSWDDSLHAFVYQCPCGDVFQITRAELRAGEEIARCPSC
TLVVRVVYDLDEVSDDERDELRVRCVPERH*
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spliced messenger RNA

>Gcaud1578.t1 ID=Gcaud1578.t1|Name=Gcaud1578.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp|location=Sequence derived from alignment at NODE_2866_length_4534_cov_3.293495:3125..3464+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTGTACGACGAAGTGGATCTGGAGGACATGAGCTGGGACGACAG
TTTACACGCGTTCGTGTACCAGTGCCCGTGCGGTGATGTGTTCCAAATCA
CGCGCGCGGAGCTTCGCGCCGGCGAGGAGATTGCGCGATGCCCGAGCTGC
ACGCTGGTGGTGCGCGTGGTGTATGACTTGGACGAAGTGAGCGACGACGA
GCGCGACGAACTGCGCGTGCGCTGCGTACCCGAACGGCACTGA
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protein sequence of Gcaud1578.t1

>Gcaud1578.t1 ID=Gcaud1578.t1|Name=Gcaud1578.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=81bp
MTLYDEVDLEDMSWDDSLHAFVYQCPCGDVFQITRAELRAGEEIARCPSC
TLVVRVVYDLDEVSDDERDELRVRCVPERH*
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mRNA from alignment at NODE_2866_length_4534_cov_3.293495:3125..3464+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1578.t1 ID=Gcaud1578.t1|Name=Gcaud1578.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=340bp|location=Sequence derived from alignment at NODE_2866_length_4534_cov_3.293495:3125..3464+ (Gracilaria caudata M_176_S67 male)
ATGGTAAGCTGCTCGCGTCCACCGCCTGTCTCGAGCGTAGCGCGAGCGAA
ACGAAGGGCGCACCCGCTGACCGCTTTCTCTCCGCGAGCGTCGCAACCAG
ACGCTGTACGACGAAGTGGATCTGGAGGACATGAGCTGGGACGACAGTTT
ACACGCGTTCGTGTACCAGTGCCCGTGCGGTGATGTGTTCCAAATCACGC
GCGCGGAGCTTCGCGCCGGCGAGGAGATTGCGCGATGCCCGAGCTGCACG
CTGGTGGTGCGCGTGGTGTATGACTTGGACGAAGTGAGCGACGACGAGCG
CGACGAACTGCGCGTGCGCTGCGTACCCGAACGGCACTGA
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Coding sequence (CDS) from alignment at NODE_2866_length_4534_cov_3.293495:3125..3464+

>Gcaud1578.t1 ID=Gcaud1578.t1|Name=Gcaud1578.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=243bp|location=Sequence derived from alignment at NODE_2866_length_4534_cov_3.293495:3125..3464+ (Gracilaria caudata M_176_S67 male)
ATGACGCTGTACGACGAAGTGGATCTGGAGGACATGAGCTGGGACGACAG
TTTACACGCGTTCGTGTACCAGTGCCCGTGCGGTGATGTGTTCCAAATCA
CGCGCGCGGAGCTTCGCGCCGGCGAGGAGATTGCGCGATGCCCGAGCTGC
ACGCTGGTGGTGCGCGTGGTGTATGACTTGGACGAAGTGAGCGACGACGA
GCGCGACGAACTGCGCGTGCGCTGCGTACCCGAACGGCACTGA
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