Gcaud1575.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1575.t1
Unique NameGcaud1575.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2784_length_4698_cov_5.123508contigNODE_2784_length_4698_cov_5.123508:1510..2541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705150.1
PFAMsNnrU
Max annot lvl2759|Eukaryota
KEGG rclassRC02636
KEGG koko:K15744
KEGG ReactionR09655
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016119,GO:0016120,GO:0016853,GO:0016859,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046246,GO:0071704,GO:0090471,GO:1901576
Evalue6.19e-83
EggNOG OGsCOG4094@1|root,2QSJ3@2759|Eukaryota
EC5.2.1.12
Description9,15,9'-tri-cis-zeta-carotene isomerase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1575Gcaud1575Gracilaria caudata M_176_S67 malegeneNODE_2784_length_4698_cov_5.123508 1510..2541 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1575.t1.start1Gcaud1575.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2784_length_4698_cov_5.123508 1510..1512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1575.t1.CDS1Gcaud1575.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2784_length_4698_cov_5.123508 1510..2541 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1575.t1.exon1Gcaud1575.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2784_length_4698_cov_5.123508 1510..2541 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1575.t1.stop1Gcaud1575.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2784_length_4698_cov_5.123508 2539..2541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1575.t1Gcaud1575.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2784_length_4698_cov_5.123508 1510..2541 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1575.t1 ID=Gcaud1575.t1|Name=Gcaud1575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=344bp
MSEFVWGFCAFVPSTYTLVQEQGLKKCLWVGRSKHTCRKLKNFAEPKFGR
AWTSSRSLREKSSECNPPSLPSSSVNALRFGILGWVSALALPTVLAYLDA
NAAQGAVTDYLGNYASHYYMVLYNGLFALLHSGLASLRPFLTRFTGERLY
RVGFALASLPSAIGLIAYFIAHRYDGKVLWTLQGAPFVHNLCYLITFISF
LFLYPATFNLLEVAAVQKPSFRIYETGIVRISRHPQLAGQVLWCFAHGAW
MGTSFTLVACLTLIAQHLVGAWNGDRRLRDKYGEEWIRYAERTSIVPFAS
VIDGKQRLRLKEFGVGYVGVVLFVLGTYAAHPWMLRVVGDLRL*
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spliced messenger RNA

>Gcaud1575.t1 ID=Gcaud1575.t1|Name=Gcaud1575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_2784_length_4698_cov_5.123508:1510..2541+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAATTCGTTTGGGGCTTTTGCGCTTTTGTCCCGTCCACATACAC
CTTAGTTCAAGAACAAGGCTTGAAGAAGTGCTTATGGGTTGGACGATCTA
AACATACATGTAGGAAGTTGAAAAACTTTGCGGAACCAAAGTTTGGGAGA
GCATGGACATCATCCAGATCTTTGCGGGAAAAATCCTCGGAATGCAATCC
ACCATCTCTTCCGTCGTCTTCCGTGAATGCGTTACGTTTCGGAATACTTG
GCTGGGTGTCTGCATTAGCACTTCCTACGGTCTTGGCATATCTTGACGCC
AATGCTGCACAAGGAGCAGTGACGGATTACCTTGGCAATTACGCGTCTCA
TTACTACATGGTTCTGTACAACGGTTTGTTCGCATTGCTTCATTCTGGTC
TGGCCTCTCTGCGCCCATTCCTCACTCGATTTACCGGTGAAAGGCTTTAT
AGAGTAGGTTTTGCACTTGCATCATTACCATCAGCCATTGGGCTCATTGC
ATACTTTATTGCACACAGGTATGATGGAAAGGTACTGTGGACCTTACAAG
GCGCGCCGTTCGTGCATAATTTGTGTTACTTGATAACGTTCATTTCGTTC
TTGTTTTTATATCCTGCTACGTTTAATCTGCTTGAAGTCGCAGCTGTGCA
GAAACCGTCGTTTAGAATATACGAGACGGGCATAGTCAGAATCTCACGAC
ATCCGCAACTGGCTGGACAGGTTTTGTGGTGTTTTGCGCACGGTGCATGG
ATGGGAACAAGTTTCACTCTTGTGGCGTGTTTGACGCTGATTGCTCAGCA
CTTGGTTGGCGCCTGGAATGGGGATCGAAGATTACGAGATAAATATGGGG
AAGAGTGGATACGTTATGCGGAGCGAACATCAATAGTTCCTTTTGCGTCA
GTTATCGATGGTAAGCAAAGGTTAAGATTGAAAGAGTTCGGTGTTGGTTA
CGTAGGGGTGGTTTTGTTTGTATTGGGTACATATGCGGCACACCCGTGGA
TGCTGCGAGTTGTGGGAGACCTGAGACTGTGA
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protein sequence of Gcaud1575.t1

>Gcaud1575.t1 ID=Gcaud1575.t1|Name=Gcaud1575.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
MSEFVWGFCAFVPSTYTLVQEQGLKKCLWVGRSKHTCRKLKNFAEPKFGR
AWTSSRSLREKSSECNPPSLPSSSVNALRFGILGWVSALALPTVLAYLDA
NAAQGAVTDYLGNYASHYYMVLYNGLFALLHSGLASLRPFLTRFTGERLY
RVGFALASLPSAIGLIAYFIAHRYDGKVLWTLQGAPFVHNLCYLITFISF
LFLYPATFNLLEVAAVQKPSFRIYETGIVRISRHPQLAGQVLWCFAHGAW
MGTSFTLVACLTLIAQHLVGAWNGDRRLRDKYGEEWIRYAERTSIVPFAS
VIDGKQRLRLKEFGVGYVGVVLFVLGTYAAHPWMLRVVGDLRL*
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mRNA from alignment at NODE_2784_length_4698_cov_5.123508:1510..2541+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1575.t1 ID=Gcaud1575.t1|Name=Gcaud1575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_2784_length_4698_cov_5.123508:1510..2541+ (Gracilaria caudata M_176_S67 male)
ATGAGCGAATTCGTTTGGGGCTTTTGCGCTTTTGTCCCGTCCACATACAC
CTTAGTTCAAGAACAAGGCTTGAAGAAGTGCTTATGGGTTGGACGATCTA
AACATACATGTAGGAAGTTGAAAAACTTTGCGGAACCAAAGTTTGGGAGA
GCATGGACATCATCCAGATCTTTGCGGGAAAAATCCTCGGAATGCAATCC
ACCATCTCTTCCGTCGTCTTCCGTGAATGCGTTACGTTTCGGAATACTTG
GCTGGGTGTCTGCATTAGCACTTCCTACGGTCTTGGCATATCTTGACGCC
AATGCTGCACAAGGAGCAGTGACGGATTACCTTGGCAATTACGCGTCTCA
TTACTACATGGTTCTGTACAACGGTTTGTTCGCATTGCTTCATTCTGGTC
TGGCCTCTCTGCGCCCATTCCTCACTCGATTTACCGGTGAAAGGCTTTAT
AGAGTAGGTTTTGCACTTGCATCATTACCATCAGCCATTGGGCTCATTGC
ATACTTTATTGCACACAGGTATGATGGAAAGGTACTGTGGACCTTACAAG
GCGCGCCGTTCGTGCATAATTTGTGTTACTTGATAACGTTCATTTCGTTC
TTGTTTTTATATCCTGCTACGTTTAATCTGCTTGAAGTCGCAGCTGTGCA
GAAACCGTCGTTTAGAATATACGAGACGGGCATAGTCAGAATCTCACGAC
ATCCGCAACTGGCTGGACAGGTTTTGTGGTGTTTTGCGCACGGTGCATGG
ATGGGAACAAGTTTCACTCTTGTGGCGTGTTTGACGCTGATTGCTCAGCA
CTTGGTTGGCGCCTGGAATGGGGATCGAAGATTACGAGATAAATATGGGG
AAGAGTGGATACGTTATGCGGAGCGAACATCAATAGTTCCTTTTGCGTCA
GTTATCGATGGTAAGCAAAGGTTAAGATTGAAAGAGTTCGGTGTTGGTTA
CGTAGGGGTGGTTTTGTTTGTATTGGGTACATATGCGGCACACCCGTGGA
TGCTGCGAGTTGTGGGAGACCTGAGACTGTGA
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Coding sequence (CDS) from alignment at NODE_2784_length_4698_cov_5.123508:1510..2541+

>Gcaud1575.t1 ID=Gcaud1575.t1|Name=Gcaud1575.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1032bp|location=Sequence derived from alignment at NODE_2784_length_4698_cov_5.123508:1510..2541+ (Gracilaria caudata M_176_S67 male)
ATGAGCGAATTCGTTTGGGGCTTTTGCGCTTTTGTCCCGTCCACATACAC
CTTAGTTCAAGAACAAGGCTTGAAGAAGTGCTTATGGGTTGGACGATCTA
AACATACATGTAGGAAGTTGAAAAACTTTGCGGAACCAAAGTTTGGGAGA
GCATGGACATCATCCAGATCTTTGCGGGAAAAATCCTCGGAATGCAATCC
ACCATCTCTTCCGTCGTCTTCCGTGAATGCGTTACGTTTCGGAATACTTG
GCTGGGTGTCTGCATTAGCACTTCCTACGGTCTTGGCATATCTTGACGCC
AATGCTGCACAAGGAGCAGTGACGGATTACCTTGGCAATTACGCGTCTCA
TTACTACATGGTTCTGTACAACGGTTTGTTCGCATTGCTTCATTCTGGTC
TGGCCTCTCTGCGCCCATTCCTCACTCGATTTACCGGTGAAAGGCTTTAT
AGAGTAGGTTTTGCACTTGCATCATTACCATCAGCCATTGGGCTCATTGC
ATACTTTATTGCACACAGGTATGATGGAAAGGTACTGTGGACCTTACAAG
GCGCGCCGTTCGTGCATAATTTGTGTTACTTGATAACGTTCATTTCGTTC
TTGTTTTTATATCCTGCTACGTTTAATCTGCTTGAAGTCGCAGCTGTGCA
GAAACCGTCGTTTAGAATATACGAGACGGGCATAGTCAGAATCTCACGAC
ATCCGCAACTGGCTGGACAGGTTTTGTGGTGTTTTGCGCACGGTGCATGG
ATGGGAACAAGTTTCACTCTTGTGGCGTGTTTGACGCTGATTGCTCAGCA
CTTGGTTGGCGCCTGGAATGGGGATCGAAGATTACGAGATAAATATGGGG
AAGAGTGGATACGTTATGCGGAGCGAACATCAATAGTTCCTTTTGCGTCA
GTTATCGATGGTAAGCAAAGGTTAAGATTGAAAGAGTTCGGTGTTGGTTA
CGTAGGGGTGGTTTTGTTTGTATTGGGTACATATGCGGCACACCCGTGGA
TGCTGCGAGTTGTGGGAGACCTGAGACTGTGA
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