Gcaud1574.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1574.t1
Unique NameGcaud1574.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2784_length_4698_cov_5.123508contigNODE_2784_length_4698_cov_5.123508:357..962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29760.VIT_14s0030g00700.t01
PFAMsTRAPP
Max annot lvl35493|Streptophyta
KEGG koko:K20304
Evalue2.8e-36
EggNOG OGsKOG3316@1|root,KOG3316@2759|Eukaryota,37KIF@33090|Viridiplantae,3GE54@35493|Streptophyta
DescriptionTrafficking protein particle complex subunit
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1574Gcaud1574Gracilaria caudata M_176_S67 malegeneNODE_2784_length_4698_cov_5.123508 357..962 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1574.t1.stop1Gcaud1574.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2784_length_4698_cov_5.123508 357..359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1574.t1.CDS1Gcaud1574.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2784_length_4698_cov_5.123508 357..962 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1574.t1.exon1Gcaud1574.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2784_length_4698_cov_5.123508 357..962 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1574.t1.start1Gcaud1574.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2784_length_4698_cov_5.123508 960..962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1574.t1Gcaud1574.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2784_length_4698_cov_5.123508 357..962 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1574.t1 ID=Gcaud1574.t1|Name=Gcaud1574.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=202bp
MHSTGDQTTVSESTLTFLHAQIVNYHLLDHGGHFFDPPDPPTQIEAQLST
SGATSEDTAINDNHALAVLSAKRKRLDALGNQVGTRLVERLALHRSRLEN
HLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLASVSPTPQ
HSGSPEDYVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQMVQ
N*
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spliced messenger RNA

>Gcaud1574.t1 ID=Gcaud1574.t1|Name=Gcaud1574.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=606bp|location=Sequence derived from alignment at NODE_2784_length_4698_cov_5.123508:357..962- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCGACAGGGGATCAAACCACAGTTTCGGAAAGTACGCTCACATT
TTTGCATGCCCAGATCGTCAACTACCATCTGCTTGACCATGGTGGACACT
TTTTTGATCCCCCGGATCCTCCCACACAGATTGAGGCTCAATTGTCTACT
TCGGGAGCAACATCAGAGGATACAGCCATAAATGATAATCATGCTCTAGC
TGTGCTGTCAGCAAAGCGGAAACGACTTGATGCGCTCGGAAACCAGGTAG
GGACTCGTCTCGTCGAACGACTAGCTCTACACAGGAGTCGTCTGGAAAAC
CACTTGGACATGGTCAAGTTCATCTGCAAGGACTTTTGGGAGGCCGTCTT
CAACAAGCATATTGATGTACTGCGCACAAACCATCGAGGTCTGTATGTGC
TAACCGACAATAATTTTCGTTGGTTAGCGTCTGTCAGTCCCACTCCACAG
CATTCTGGGTCACCCGAAGACTATGTTGTATTTCCGTGTGGACTCATTTG
TGGAGCACTGACAAGACTGGGGCTTCCTTGCAGAGTCACGGCAGAACTGG
TTCCGTTAACATCAGCGTTTAAATGCTCATTTAATGTTCAGATGGTACAA
AACTGA
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protein sequence of Gcaud1574.t1

>Gcaud1574.t1 ID=Gcaud1574.t1|Name=Gcaud1574.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=202bp
MHSTGDQTTVSESTLTFLHAQIVNYHLLDHGGHFFDPPDPPTQIEAQLST
SGATSEDTAINDNHALAVLSAKRKRLDALGNQVGTRLVERLALHRSRLEN
HLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLASVSPTPQ
HSGSPEDYVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQMVQ
N*
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mRNA from alignment at NODE_2784_length_4698_cov_5.123508:357..962-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1574.t1 ID=Gcaud1574.t1|Name=Gcaud1574.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=606bp|location=Sequence derived from alignment at NODE_2784_length_4698_cov_5.123508:357..962- (Gracilaria caudata M_176_S67 male)
ATGCATTCGACAGGGGATCAAACCACAGTTTCGGAAAGTACGCTCACATT
TTTGCATGCCCAGATCGTCAACTACCATCTGCTTGACCATGGTGGACACT
TTTTTGATCCCCCGGATCCTCCCACACAGATTGAGGCTCAATTGTCTACT
TCGGGAGCAACATCAGAGGATACAGCCATAAATGATAATCATGCTCTAGC
TGTGCTGTCAGCAAAGCGGAAACGACTTGATGCGCTCGGAAACCAGGTAG
GGACTCGTCTCGTCGAACGACTAGCTCTACACAGGAGTCGTCTGGAAAAC
CACTTGGACATGGTCAAGTTCATCTGCAAGGACTTTTGGGAGGCCGTCTT
CAACAAGCATATTGATGTACTGCGCACAAACCATCGAGGTCTGTATGTGC
TAACCGACAATAATTTTCGTTGGTTAGCGTCTGTCAGTCCCACTCCACAG
CATTCTGGGTCACCCGAAGACTATGTTGTATTTCCGTGTGGACTCATTTG
TGGAGCACTGACAAGACTGGGGCTTCCTTGCAGAGTCACGGCAGAACTGG
TTCCGTTAACATCAGCGTTTAAATGCTCATTTAATGTTCAGATGGTACAA
AACTGA
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Coding sequence (CDS) from alignment at NODE_2784_length_4698_cov_5.123508:357..962-

>Gcaud1574.t1 ID=Gcaud1574.t1|Name=Gcaud1574.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=606bp|location=Sequence derived from alignment at NODE_2784_length_4698_cov_5.123508:357..962- (Gracilaria caudata M_176_S67 male)
ATGCATTCGACAGGGGATCAAACCACAGTTTCGGAAAGTACGCTCACATT
TTTGCATGCCCAGATCGTCAACTACCATCTGCTTGACCATGGTGGACACT
TTTTTGATCCCCCGGATCCTCCCACACAGATTGAGGCTCAATTGTCTACT
TCGGGAGCAACATCAGAGGATACAGCCATAAATGATAATCATGCTCTAGC
TGTGCTGTCAGCAAAGCGGAAACGACTTGATGCGCTCGGAAACCAGGTAG
GGACTCGTCTCGTCGAACGACTAGCTCTACACAGGAGTCGTCTGGAAAAC
CACTTGGACATGGTCAAGTTCATCTGCAAGGACTTTTGGGAGGCCGTCTT
CAACAAGCATATTGATGTACTGCGCACAAACCATCGAGGTCTGTATGTGC
TAACCGACAATAATTTTCGTTGGTTAGCGTCTGTCAGTCCCACTCCACAG
CATTCTGGGTCACCCGAAGACTATGTTGTATTTCCGTGTGGACTCATTTG
TGGAGCACTGACAAGACTGGGGCTTCCTTGCAGAGTCACGGCAGAACTGG
TTCCGTTAACATCAGCGTTTAAATGCTCATTTAATGTTCAGATGGTACAA
AACTGA
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