Gcaud1574.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1574.t1
Unique NameGcaud1574.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length202
Homology
BLAST of Gcaud1574.t1 vs. uniprot
Match: A0A2V3IEE5_9FLOR (Trafficking protein particle complex subunit 6B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEE5_9FLOR)

HSP 1 Score: 339 bits (869), Expect = 7.790e-117
Identity = 159/201 (79.10%), Postives = 175/201 (87.06%), Query Frame = 0
Query:    1 MHSTGDQTTVSESTLTFLHAQIVNYHLLDHGGHFFDPPDPPTQIEAQLSTSGATSEDTAINDNHALAVLSAKRKRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLASVSPTPQHSGSPEDYVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQMVQN 201
            MH+T DQT+VSES LTFLHAQIV+YHL  HGGH  DPP+ P ++ A  S      +D   ++N  LA+L+AKRKRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDN FRWL+SVSPTPQHSG PED+VVFPCGLICGALT LGLPCRVTAELVP+ SA+KCSFNVQM+QN
Sbjct:    1 MHATSDQTSVSESALTFLHAQIVDYHLRGHGGHCLDPPESPPEVAAHHSAPSTMPQDATASENQDLAILAAKRKRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNEFRWLSSVSPTPQHSGLPEDFVVFPCGLICGALTTLGLPCRVTAELVPVQSAYKCSFNVQMIQN 201          
BLAST of Gcaud1574.t1 vs. uniprot
Match: A0A1X6PF38_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PF38_PORUM)

HSP 1 Score: 170 bits (431), Expect = 4.750e-50
Identity = 93/211 (44.08%), Postives = 118/211 (55.92%), Query Frame = 0
Query:   10 VSESTLTFLHAQIVNYHLLDHGGHFFDPPDPPTQIEAQLSTSGATSEDTAINDNHALAVLSAKRKRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWL---------------------ASVSPTPQHSGSPEDYVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQMV 199
            V+ES+L FL  Q+V Y L   G   + PP P     + +    A                   R+RL+ +G  VG RLVER A+ + R+++ L+ VKF+C+DFWE VF KH+DVLRTNH+GLYVLTDN FRWL                     A V       G PEDYVVFPCGLICGALTRLG+ CRVTAE+       +C F+VQ++
Sbjct:   13 VAESSLDFLMMQVVTYFLHGPGAAAYVPPVP-----SAVPDGNALPXXXXXXXXXXXXXXXETRRRLEGVGYDVGHRLVERYAVEKERMDSDLEAVKFVCRDFWEGVFKKHVDVLRTNHKGLYVLTDNKFRWLGRVWADEDSEEGGAGAVGADGAEVGGAIGGRGKPEDYVVFPCGLICGALTRLGVRCRVTAEIA---GGAQCKFSVQVI 215          
BLAST of Gcaud1574.t1 vs. uniprot
Match: A0A5J4YZJ1_PORPP (Trafficking protein particle complex subunit 6B n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZJ1_PORPP)

HSP 1 Score: 141 bits (355), Expect = 1.240e-38
Identity = 73/147 (49.66%), Postives = 101/147 (68.71%), Query Frame = 0
Query:   61 NDNHALAVLSAKRK-------RLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLASVSPTPQ-HSGSPEDYVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQMV 199
            ND+ A+     KR+       RL+  G ++G RL+ERLA+ +  L++ LD+VKFIC++ WEA F+K +DVLRTN +GLYVL D+NF+WLAS+S      + S EDY VFPCGL+CGAL +LG+ C+VTA++  L    +  F VQMV
Sbjct:   65 NDSVAVRDPEEKRRNEFDNKLRLELNGFEIGQRLIERLAVDKDMLDSELDIVKFICRELWEASFSKQVDVLRTNRKGLYVLQDSNFKWLASLSKNRDGDTRSLEDYAVFPCGLVCGALHKLGMKCQVTADIKALP---RVEFFVQMV 208          
BLAST of Gcaud1574.t1 vs. uniprot
Match: A0A7S1T8F7_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T8F7_9RHOD)

HSP 1 Score: 134 bits (337), Expect = 7.360e-36
Identity = 81/192 (42.19%), Postives = 111/192 (57.81%), Query Frame = 0
Query:   10 VSESTLTFLHAQIVNYHLLDHGGHFFDPPDPPTQIEAQLSTSGATSEDTAINDNHALAVLSAKRKRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWL--ASVSPTPQHSG-SPEDYVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQM 198
            V+ES + FL  Q+ +Y L    G           +  +    G   ED +         +S  R RL+A+G  VG RLVERL++   +L+  L+++K++CKDFWE VF K +D L+TNH+GLYVL D++FRWL  AS S   Q  G + EDY +FP GLI GAL RLGL C VT ++     AF   F+VQ+
Sbjct:   36 VAESGVEFLLIQVTDYVLSGKRG--------VRVVGRKGMEDGMDEEDLSTE------AMSEARGRLEAMGFDVGQRLVERLSMDMGKLDGELEIIKYVCKDFWEQVFKKQVDALKTNHKGLYVLQDDHFRWLRYASESGGRQRRGLTLEDYALFPGGLIWGALQRLGLRCSVTVDVSRPPKAF---FSVQI 210          
BLAST of Gcaud1574.t1 vs. uniprot
Match: A0A5B7CAB6_DAVIN (Putative trafficking protein (Fragment) n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A5B7CAB6_DAVIN)

HSP 1 Score: 132 bits (333), Expect = 1.210e-35
Identity = 64/142 (45.07%), Postives = 93/142 (65.49%), Query Frame = 0
Query:   74 KRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLA--SVSPTPQHSGSPED---------------YVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQM 198
            +R++A+G QVG +L ER  + R R  +HL+ +KFICKDFW  +F K ID L+TNHRG +VL DN FRWLA  S+ P+ ++S SP+D               ++ FPCG+I GAL+ LG+PC V+A++  L +   CSF +++
Sbjct:   48 RRIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNQFRWLAHMSIDPSAENSSSPQDPSAMAENKAAQATGMHLYFPCGIIRGALSNLGIPCAVSADISNLPA---CSFVIRI 186          
BLAST of Gcaud1574.t1 vs. uniprot
Match: A9NV50_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NV50_PICSI)

HSP 1 Score: 132 bits (331), Expect = 1.760e-35
Identity = 65/144 (45.14%), Postives = 91/144 (63.19%), Query Frame = 0
Query:   74 KRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLASVS---PTPQHSGSPED----------------YVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQM 198
            +R++A+G QVG +L ER    R R  +HL+ +KFICKDFW  +F K ID L+TNHRG +VL DN FRWL  +S   P P  +GSP++                ++ FPCG+I GALT LG+PC+V+AE+  L +   CSF +++
Sbjct:   35 RRIEAIGYQVGLQLAERYTKERPRFADHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRISLDSPLPTANGSPKESSTTSNDAKSAQAAGMHLYFPCGIIRGALTNLGVPCQVSAEVANLPA---CSFVIRI 175          
BLAST of Gcaud1574.t1 vs. uniprot
Match: UPI00026588CF (trafficking protein particle complex subunit 6b n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026588CF)

HSP 1 Score: 130 bits (328), Expect = 3.520e-35
Identity = 64/129 (49.61%), Postives = 88/129 (68.22%), Query Frame = 0
Query:   69 LSAKRKRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLASVSPTPQHSGSPEDYVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQ 197
            L+AK  +L+ +G + G RLVERL     R ++ LD+VKFICK+FW  +F K +D LRTNH+G+YVL D+ FR+L+S+S + Q+  S   Y+ FPCGLI GAL+ LG+   VTAE+  L S   C F +Q
Sbjct:   36 LNAKVSKLEQIGFETGYRLVERLTRDTPRFKSDLDVVKFICKEFWSVLFKKQVDNLRTNHQGVYVLQDSKFRFLSSMSASSQYMASTPCYLAFPCGLIRGALSNLGITSVVTAEVTDLPS---CKFQIQ 161          
BLAST of Gcaud1574.t1 vs. uniprot
Match: D7L316_ARALL (Predicted protein n=6 Tax=Brassicaceae TaxID=3700 RepID=D7L316_ARALL)

HSP 1 Score: 130 bits (327), Expect = 3.720e-35
Identity = 63/140 (45.00%), Postives = 86/140 (61.43%), Query Frame = 0
Query:   74 KRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLASVSPTPQHSGSPED---------------YVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQM 198
            +R++A+G QVG +L ER  + R R  +HL+ +KFICKDFW  VF K ID L+TNHRG +VL DN FRWL+ VS  P      ED               Y+ FPCG+I G L+ LG+PC V+A++  L +   CSF +++
Sbjct:   17 RRIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSENETEDPSTPGESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPT---CSFVIRV 153          
BLAST of Gcaud1574.t1 vs. uniprot
Match: A0A7J7CZH7_TRIWF (Trafficking protein particle complex subunit 6B n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CZH7_TRIWF)

HSP 1 Score: 130 bits (328), Expect = 4.710e-35
Identity = 65/142 (45.77%), Postives = 93/142 (65.49%), Query Frame = 0
Query:   74 KRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLA--SVSPTPQHSGSPED---------------YVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQM 198
            +R++A+G QVG +L ER  + R R  +HL+ +KFICKDFW  VF K ID L+TNHRG +VL DN FRWLA  SV P+ ++SG+ +D               ++ FPCG+I GAL+ LG+PC V+A++  L +   CSF +++
Sbjct:   35 RRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNQFRWLARMSVDPSLENSGASQDPSDASESKATQATSMHLYFPCGIIRGALSNLGIPCAVSADVSNLPA---CSFVIRI 173          
BLAST of Gcaud1574.t1 vs. uniprot
Match: F4YFC7_CAMSI (Trafficking protein n=1 Tax=Camellia sinensis TaxID=4442 RepID=F4YFC7_CAMSI)

HSP 1 Score: 130 bits (328), Expect = 4.710e-35
Identity = 64/142 (45.07%), Postives = 92/142 (64.79%), Query Frame = 0
Query:   74 KRLDALGNQVGTRLVERLALHRSRLENHLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLA--SVSPTPQHSGSPED---------------YVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQM 198
            +R++A+G QVG +L ER  + R R  +HL+ +KFICKDFW  +F K ID L+TNHRG +VL DN F WL+  S+ P+ Q+SGS +D               Y+ FPCG+I GAL+ LG+PC V+A++  L +   CSF +++
Sbjct:   35 RRIEAIGYQVGHQLSERYTMDRPRFSDHLEAIKFICKDFWTELFKKQIDNLKTNHRGTFVLQDNQFNWLSHMSIEPSSQNSGSVQDPSTMAESKAAQATGMYLYFPCGIIRGALSNLGIPCAVSADISNLPA---CSFVIRI 173          
The following BLAST results are available for this feature:
BLAST of Gcaud1574.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEE5_9FLOR7.790e-11779.10Trafficking protein particle complex subunit 6B n=... [more]
A0A1X6PF38_PORUM4.750e-5044.08Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YZJ1_PORPP1.240e-3849.66Trafficking protein particle complex subunit 6B n=... [more]
A0A7S1T8F7_9RHOD7.360e-3642.19Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A5B7CAB6_DAVIN1.210e-3545.07Putative trafficking protein (Fragment) n=2 Tax=Pe... [more]
A9NV50_PICSI1.760e-3545.14Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
UPI00026588CF3.520e-3549.61trafficking protein particle complex subunit 6b n=... [more]
D7L316_ARALL3.720e-3545.00Predicted protein n=6 Tax=Brassicaceae TaxID=3700 ... [more]
A0A7J7CZH7_TRIWF4.710e-3545.77Trafficking protein particle complex subunit 6B n=... [more]
F4YFC7_CAMSI4.710e-3545.07Trafficking protein n=1 Tax=Camellia sinensis TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 61..198
e-value: 1.3E-38
score: 132.1
NoneNo IPR availableGENE3D3.30.1380.20Trafficking protein particle complex subunit 3coord: 8..200
e-value: 3.4E-48
score: 165.2
IPR037992TRAPP complex, Trs33 subunitPANTHERPTHR12817TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6Bcoord: 5..198
IPR037992TRAPP complex, Trs33 subunitCDDcd14944TRAPPC6A_Trs33coord: 11..198
e-value: 5.44769E-60
score: 183.224
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilySUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 8..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2784_length_4698_cov_5.123508contigNODE_2784_length_4698_cov_5.123508:357..962 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1574.t1Gcaud1574.t1Gracilaria caudata M_176_S67 malemRNANODE_2784_length_4698_cov_5.123508 357..962 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1574.t1 ID=Gcaud1574.t1|Name=Gcaud1574.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=202bp
MHSTGDQTTVSESTLTFLHAQIVNYHLLDHGGHFFDPPDPPTQIEAQLST
SGATSEDTAINDNHALAVLSAKRKRLDALGNQVGTRLVERLALHRSRLEN
HLDMVKFICKDFWEAVFNKHIDVLRTNHRGLYVLTDNNFRWLASVSPTPQ
HSGSPEDYVVFPCGLICGALTRLGLPCRVTAELVPLTSAFKCSFNVQMVQ
N*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007194TRAPP_component
IPR037992TRAPPC6/Trs33
IPR024096NO_sig/Golgi_transp_ligand-bd