Gcaud1541.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1541.t2
Unique NameGcaud1541.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_717_length_19191_cov_4.160366contigNODE_717_length_19191_cov_4.160366:8724..9284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1541Gcaud1541Gracilaria caudata M_176_S67 malegeneNODE_717_length_19191_cov_4.160366 8724..10061 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1541.t2.stop1Gcaud1541.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_717_length_19191_cov_4.160366 8724..8726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1541.t2.CDS1Gcaud1541.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_717_length_19191_cov_4.160366 8724..9284 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1541.t2.exon1Gcaud1541.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_717_length_19191_cov_4.160366 8724..9284 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1541.t2.start1Gcaud1541.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_717_length_19191_cov_4.160366 9282..9284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1541.t2Gcaud1541.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_717_length_19191_cov_4.160366 8724..9284 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1541.t2 ID=Gcaud1541.t2|Name=Gcaud1541.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=187bp
MTETIDKHNRFAPSRLWKEGPLRRIDTSEPFISIHARLGFGVGEYIKRFK
LQMVGHTMDSVAYCMAKKAMFLAKQEGITRPPRFYLATDTAEFRLKLKRA
LTRMDSRTRVMYGTWGMKHVKKMQEKTSDDLKLFRYTFMDVYIMSKGRAI
LRSSSGFPNLAIWMGGIPSQLMFNINKDCKQERSTV*
back to top

spliced messenger RNA

>Gcaud1541.t2 ID=Gcaud1541.t2|Name=Gcaud1541.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp|location=Sequence derived from alignment at NODE_717_length_19191_cov_4.160366:8724..9284- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAAACTATAGACAAACACAACCGCTTCGCTCCCTCACGTCTATG
GAAGGAAGGACCATTGAGACGAATCGATACCAGTGAACCGTTTATTTCGA
TTCATGCCAGATTAGGATTTGGAGTTGGCGAATACATCAAGAGGTTCAAG
CTTCAGATGGTTGGTCACACAATGGACTCTGTGGCATACTGTATGGCCAA
GAAAGCAATGTTTCTCGCCAAGCAAGAGGGCATAACAAGGCCACCACGCT
TTTACTTGGCCACAGACACCGCCGAGTTCCGCCTGAAGTTGAAAAGAGCG
CTCACCAGAATGGACAGTAGGACAAGAGTTATGTACGGCACGTGGGGCAT
GAAGCATGTGAAGAAAATGCAGGAGAAGACATCAGACGATTTGAAGTTGT
TCCGATACACATTCATGGACGTGTACATTATGTCGAAGGGACGAGCCATT
TTACGAAGCTCGTCTGGTTTTCCGAACCTGGCGATCTGGATGGGAGGAAT
ACCCTCACAGTTGATGTTTAACATCAATAAAGACTGTAAACAAGAGCGCT
CTACCGTTTGA
back to top

protein sequence of Gcaud1541.t2

>Gcaud1541.t2 ID=Gcaud1541.t2|Name=Gcaud1541.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=187bp
MTETIDKHNRFAPSRLWKEGPLRRIDTSEPFISIHARLGFGVGEYIKRFK
LQMVGHTMDSVAYCMAKKAMFLAKQEGITRPPRFYLATDTAEFRLKLKRA
LTRMDSRTRVMYGTWGMKHVKKMQEKTSDDLKLFRYTFMDVYIMSKGRAI
LRSSSGFPNLAIWMGGIPSQLMFNINKDCKQERSTV*
back to top

mRNA from alignment at NODE_717_length_19191_cov_4.160366:8724..9284-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1541.t2 ID=Gcaud1541.t2|Name=Gcaud1541.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp|location=Sequence derived from alignment at NODE_717_length_19191_cov_4.160366:8724..9284- (Gracilaria caudata M_176_S67 male)
ATGACAGAAACTATAGACAAACACAACCGCTTCGCTCCCTCACGTCTATG
GAAGGAAGGACCATTGAGACGAATCGATACCAGTGAACCGTTTATTTCGA
TTCATGCCAGATTAGGATTTGGAGTTGGCGAATACATCAAGAGGTTCAAG
CTTCAGATGGTTGGTCACACAATGGACTCTGTGGCATACTGTATGGCCAA
GAAAGCAATGTTTCTCGCCAAGCAAGAGGGCATAACAAGGCCACCACGCT
TTTACTTGGCCACAGACACCGCCGAGTTCCGCCTGAAGTTGAAAAGAGCG
CTCACCAGAATGGACAGTAGGACAAGAGTTATGTACGGCACGTGGGGCAT
GAAGCATGTGAAGAAAATGCAGGAGAAGACATCAGACGATTTGAAGTTGT
TCCGATACACATTCATGGACGTGTACATTATGTCGAAGGGACGAGCCATT
TTACGAAGCTCGTCTGGTTTTCCGAACCTGGCGATCTGGATGGGAGGAAT
ACCCTCACAGTTGATGTTTAACATCAATAAAGACTGTAAACAAGAGCGCT
CTACCGTTTGA
back to top

Coding sequence (CDS) from alignment at NODE_717_length_19191_cov_4.160366:8724..9284-

>Gcaud1541.t2 ID=Gcaud1541.t2|Name=Gcaud1541.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=561bp|location=Sequence derived from alignment at NODE_717_length_19191_cov_4.160366:8724..9284- (Gracilaria caudata M_176_S67 male)
ATGACAGAAACTATAGACAAACACAACCGCTTCGCTCCCTCACGTCTATG
GAAGGAAGGACCATTGAGACGAATCGATACCAGTGAACCGTTTATTTCGA
TTCATGCCAGATTAGGATTTGGAGTTGGCGAATACATCAAGAGGTTCAAG
CTTCAGATGGTTGGTCACACAATGGACTCTGTGGCATACTGTATGGCCAA
GAAAGCAATGTTTCTCGCCAAGCAAGAGGGCATAACAAGGCCACCACGCT
TTTACTTGGCCACAGACACCGCCGAGTTCCGCCTGAAGTTGAAAAGAGCG
CTCACCAGAATGGACAGTAGGACAAGAGTTATGTACGGCACGTGGGGCAT
GAAGCATGTGAAGAAAATGCAGGAGAAGACATCAGACGATTTGAAGTTGT
TCCGATACACATTCATGGACGTGTACATTATGTCGAAGGGACGAGCCATT
TTACGAAGCTCGTCTGGTTTTCCGAACCTGGCGATCTGGATGGGAGGAAT
ACCCTCACAGTTGATGTTTAACATCAATAAAGACTGTAAACAAGAGCGCT
CTACCGTTTGA
back to top