Gcaud1541.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1541.t1
Unique Name	Gcaud1541.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	446

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_717_length_19191_cov_4.160366	contig	NODE_717_length_19191_cov_4.160366:8724..10061 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1541	Gcaud1541	Gracilaria caudata M_176_S67 male	gene	NODE_717_length_19191_cov_4.160366 8724..10061 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1541.t1.stop1	Gcaud1541.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_717_length_19191_cov_4.160366 8724..8726 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1541.t1.CDS1	Gcaud1541.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_717_length_19191_cov_4.160366 8724..10061 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1541.t1.exon1	Gcaud1541.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_717_length_19191_cov_4.160366 8724..10061 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1541.t1.start1	Gcaud1541.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_717_length_19191_cov_4.160366 10059..10061 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1541.t1	Gcaud1541.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_717_length_19191_cov_4.160366 8724..10061 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_717_length_19191_cov_4.160366:8724..10061-
coding sequence from alignment at NODE_717_length_19191_cov_4.160366:8724..10061-

mRNA sequence

>Gcaud1541.t1 ID=Gcaud1541.t1|Name=Gcaud1541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=446bp
MASFSFTRIVPFLIAFALLATILIQFSISSWRTTKYSSFFFEHATPENLA
PRNRRIKLKNVIKVQRALEDLNRILIERYVTWHHSVISKVQSGELDGSSV
RTLVFIGNEGRHGLGDRVRGLLFAYMASVFSERLFLIKWNDPFPLSTVFV
NSLRSNFTFDESLFPSRLNKDGEVDVTKVVRAELTDMHLFTGKEAQLLFL
CEPRPSFADVFNTVEKFPNLTTSIEMKKVLPFRRRPSADQFFPLIFKALF
RPSAELRQMMTETIDKHNRFAPSRLWKEGPLRRIDTSEPFISIHARLGFG
VGEYIKRFKLQMVGHTMDSVAYCMAKKAMFLAKQEGITRPPRFYLATDTA
EFRLKLKRALTRMDSRTRVMYGTWGMKHVKKMQEKTSDDLKLFRYTFMDV
YIMSKGRAILRSSSGFPNLAIWMGGIPSQLMFNINKDCKQERSTV*

spliced messenger RNA

>Gcaud1541.t1 ID=Gcaud1541.t1|Name=Gcaud1541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at NODE_717_length_19191_cov_4.160366:8724..10061- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCTTTTCCTTTACCCGTATTGTTCCTTTCCTTATTGCCTTCGC
TCTACTGGCAACGATATTGATCCAATTCTCAATCTCTAGTTGGAGAACAA
CGAAGTATTCATCCTTCTTCTTCGAACATGCTACCCCCGAGAACCTCGCC
CCAAGGAACAGGCGCATCAAGTTGAAGAATGTCATAAAAGTACAACGAGC
GCTTGAAGATTTGAATCGAATCCTCATCGAACGTTACGTTACATGGCATC
ATTCAGTGATCTCCAAGGTCCAAAGTGGCGAACTGGATGGGTCTTCAGTG
AGAACACTTGTTTTCATCGGAAATGAAGGTCGTCATGGCCTCGGAGATCG
AGTGCGAGGGTTGCTCTTCGCTTACATGGCTTCCGTTTTCTCCGAAAGAT
TGTTTCTCATCAAATGGAATGATCCCTTTCCGTTGTCCACTGTCTTCGTC
AACAGTCTTCGGTCAAACTTTACATTTGATGAATCTCTGTTTCCGTCCAG
GTTGAATAAGGATGGTGAGGTTGATGTCACGAAGGTCGTCCGTGCCGAAC
TAACAGATATGCATCTGTTCACAGGAAAGGAAGCCCAGCTGTTGTTTTTG
TGTGAACCCAGACCAAGTTTTGCAGATGTGTTCAACACGGTGGAAAAGTT
TCCCAATCTCACAACGTCCATTGAGATGAAGAAAGTGTTGCCTTTCCGAA
GACGTCCCAGTGCCGATCAGTTTTTCCCGTTGATTTTCAAGGCGTTGTTC
AGACCATCGGCTGAGTTGCGACAGATGATGACAGAAACTATAGACAAACA
CAACCGCTTCGCTCCCTCACGTCTATGGAAGGAAGGACCATTGAGACGAA
TCGATACCAGTGAACCGTTTATTTCGATTCATGCCAGATTAGGATTTGGA
GTTGGCGAATACATCAAGAGGTTCAAGCTTCAGATGGTTGGTCACACAAT
GGACTCTGTGGCATACTGTATGGCCAAGAAAGCAATGTTTCTCGCCAAGC
AAGAGGGCATAACAAGGCCACCACGCTTTTACTTGGCCACAGACACCGCC
GAGTTCCGCCTGAAGTTGAAAAGAGCGCTCACCAGAATGGACAGTAGGAC
AAGAGTTATGTACGGCACGTGGGGCATGAAGCATGTGAAGAAAATGCAGG
AGAAGACATCAGACGATTTGAAGTTGTTCCGATACACATTCATGGACGTG
TACATTATGTCGAAGGGACGAGCCATTTTACGAAGCTCGTCTGGTTTTCC
GAACCTGGCGATCTGGATGGGAGGAATACCCTCACAGTTGATGTTTAACA
TCAATAAAGACTGTAAACAAGAGCGCTCTACCGTTTGA

protein sequence of Gcaud1541.t1

>Gcaud1541.t1 ID=Gcaud1541.t1|Name=Gcaud1541.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=446bp
MASFSFTRIVPFLIAFALLATILIQFSISSWRTTKYSSFFFEHATPENLA
PRNRRIKLKNVIKVQRALEDLNRILIERYVTWHHSVISKVQSGELDGSSV
RTLVFIGNEGRHGLGDRVRGLLFAYMASVFSERLFLIKWNDPFPLSTVFV
NSLRSNFTFDESLFPSRLNKDGEVDVTKVVRAELTDMHLFTGKEAQLLFL
CEPRPSFADVFNTVEKFPNLTTSIEMKKVLPFRRRPSADQFFPLIFKALF
RPSAELRQMMTETIDKHNRFAPSRLWKEGPLRRIDTSEPFISIHARLGFG
VGEYIKRFKLQMVGHTMDSVAYCMAKKAMFLAKQEGITRPPRFYLATDTA
EFRLKLKRALTRMDSRTRVMYGTWGMKHVKKMQEKTSDDLKLFRYTFMDV
YIMSKGRAILRSSSGFPNLAIWMGGIPSQLMFNINKDCKQERSTV*

mRNA from alignment at NODE_717_length_19191_cov_4.160366:8724..10061-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1541.t1 ID=Gcaud1541.t1|Name=Gcaud1541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at NODE_717_length_19191_cov_4.160366:8724..10061- (Gracilaria caudata M_176_S67 male)
ATGGCGTCCTTTTCCTTTACCCGTATTGTTCCTTTCCTTATTGCCTTCGC
TCTACTGGCAACGATATTGATCCAATTCTCAATCTCTAGTTGGAGAACAA
CGAAGTATTCATCCTTCTTCTTCGAACATGCTACCCCCGAGAACCTCGCC
CCAAGGAACAGGCGCATCAAGTTGAAGAATGTCATAAAAGTACAACGAGC
GCTTGAAGATTTGAATCGAATCCTCATCGAACGTTACGTTACATGGCATC
ATTCAGTGATCTCCAAGGTCCAAAGTGGCGAACTGGATGGGTCTTCAGTG
AGAACACTTGTTTTCATCGGAAATGAAGGTCGTCATGGCCTCGGAGATCG
AGTGCGAGGGTTGCTCTTCGCTTACATGGCTTCCGTTTTCTCCGAAAGAT
TGTTTCTCATCAAATGGAATGATCCCTTTCCGTTGTCCACTGTCTTCGTC
AACAGTCTTCGGTCAAACTTTACATTTGATGAATCTCTGTTTCCGTCCAG
GTTGAATAAGGATGGTGAGGTTGATGTCACGAAGGTCGTCCGTGCCGAAC
TAACAGATATGCATCTGTTCACAGGAAAGGAAGCCCAGCTGTTGTTTTTG
TGTGAACCCAGACCAAGTTTTGCAGATGTGTTCAACACGGTGGAAAAGTT
TCCCAATCTCACAACGTCCATTGAGATGAAGAAAGTGTTGCCTTTCCGAA
GACGTCCCAGTGCCGATCAGTTTTTCCCGTTGATTTTCAAGGCGTTGTTC
AGACCATCGGCTGAGTTGCGACAGATGATGACAGAAACTATAGACAAACA
CAACCGCTTCGCTCCCTCACGTCTATGGAAGGAAGGACCATTGAGACGAA
TCGATACCAGTGAACCGTTTATTTCGATTCATGCCAGATTAGGATTTGGA
GTTGGCGAATACATCAAGAGGTTCAAGCTTCAGATGGTTGGTCACACAAT
GGACTCTGTGGCATACTGTATGGCCAAGAAAGCAATGTTTCTCGCCAAGC
AAGAGGGCATAACAAGGCCACCACGCTTTTACTTGGCCACAGACACCGCC
GAGTTCCGCCTGAAGTTGAAAAGAGCGCTCACCAGAATGGACAGTAGGAC
AAGAGTTATGTACGGCACGTGGGGCATGAAGCATGTGAAGAAAATGCAGG
AGAAGACATCAGACGATTTGAAGTTGTTCCGATACACATTCATGGACGTG
TACATTATGTCGAAGGGACGAGCCATTTTACGAAGCTCGTCTGGTTTTCC
GAACCTGGCGATCTGGATGGGAGGAATACCCTCACAGTTGATGTTTAACA
TCAATAAAGACTGTAAACAAGAGCGCTCTACCGTTTGA

Coding sequence (CDS) from alignment at NODE_717_length_19191_cov_4.160366:8724..10061-

>Gcaud1541.t1 ID=Gcaud1541.t1|Name=Gcaud1541.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1338bp|location=Sequence derived from alignment at NODE_717_length_19191_cov_4.160366:8724..10061- (Gracilaria caudata M_176_S67 male)
ATGGCGTCCTTTTCCTTTACCCGTATTGTTCCTTTCCTTATTGCCTTCGC
TCTACTGGCAACGATATTGATCCAATTCTCAATCTCTAGTTGGAGAACAA
CGAAGTATTCATCCTTCTTCTTCGAACATGCTACCCCCGAGAACCTCGCC
CCAAGGAACAGGCGCATCAAGTTGAAGAATGTCATAAAAGTACAACGAGC
GCTTGAAGATTTGAATCGAATCCTCATCGAACGTTACGTTACATGGCATC
ATTCAGTGATCTCCAAGGTCCAAAGTGGCGAACTGGATGGGTCTTCAGTG
AGAACACTTGTTTTCATCGGAAATGAAGGTCGTCATGGCCTCGGAGATCG
AGTGCGAGGGTTGCTCTTCGCTTACATGGCTTCCGTTTTCTCCGAAAGAT
TGTTTCTCATCAAATGGAATGATCCCTTTCCGTTGTCCACTGTCTTCGTC
AACAGTCTTCGGTCAAACTTTACATTTGATGAATCTCTGTTTCCGTCCAG
GTTGAATAAGGATGGTGAGGTTGATGTCACGAAGGTCGTCCGTGCCGAAC
TAACAGATATGCATCTGTTCACAGGAAAGGAAGCCCAGCTGTTGTTTTTG
TGTGAACCCAGACCAAGTTTTGCAGATGTGTTCAACACGGTGGAAAAGTT
TCCCAATCTCACAACGTCCATTGAGATGAAGAAAGTGTTGCCTTTCCGAA
GACGTCCCAGTGCCGATCAGTTTTTCCCGTTGATTTTCAAGGCGTTGTTC
AGACCATCGGCTGAGTTGCGACAGATGATGACAGAAACTATAGACAAACA
CAACCGCTTCGCTCCCTCACGTCTATGGAAGGAAGGACCATTGAGACGAA
TCGATACCAGTGAACCGTTTATTTCGATTCATGCCAGATTAGGATTTGGA
GTTGGCGAATACATCAAGAGGTTCAAGCTTCAGATGGTTGGTCACACAAT
GGACTCTGTGGCATACTGTATGGCCAAGAAAGCAATGTTTCTCGCCAAGC
AAGAGGGCATAACAAGGCCACCACGCTTTTACTTGGCCACAGACACCGCC
GAGTTCCGCCTGAAGTTGAAAAGAGCGCTCACCAGAATGGACAGTAGGAC
AAGAGTTATGTACGGCACGTGGGGCATGAAGCATGTGAAGAAAATGCAGG
AGAAGACATCAGACGATTTGAAGTTGTTCCGATACACATTCATGGACGTG
TACATTATGTCGAAGGGACGAGCCATTTTACGAAGCTCGTCTGGTTTTCC
GAACCTGGCGATCTGGATGGGAGGAATACCCTCACAGTTGATGTTTAACA
TCAATAAAGACTGTAAACAAGAGCGCTCTACCGTTTGA