Gcaud1538.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1538.t1
Unique Name	Gcaud1538.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	215

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2780_length_4706_cov_3.815601	contig	NODE_2780_length_4706_cov_3.815601:3474..4118 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	225117.XP_009338283.1
PFAMs	RRM_1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12741
KEGG Pathway	ko03040,map03040
GOs	GO:0000166,GO:0000959,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009451,GO:0009628,GO:0009987,GO:0016070,GO:0016071,GO:0016553,GO:0016554,GO:0016556,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0071704,GO:0080156,GO:0090304,GO:0097159,GO:0097367,GO:1900864,GO:1901265,GO:1901360,GO:1901363
Evalue	2.9e-13
EggNOG OGs	KOG0118@1\|root,KOG0118@2759\|Eukaryota,37SIW@33090\|Viridiplantae,3GBC5@35493\|Streptophyta,4JP0Q@91835\|fabids
Description	Glycine-rich RNA-binding protein
COG category	A
BRITE	ko00000,ko00001,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1538	Gcaud1538	Gracilaria caudata M_176_S67 male	gene	NODE_2780_length_4706_cov_3.815601 3474..4118 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1538.t1.stop1	Gcaud1538.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2780_length_4706_cov_3.815601 3474..3476 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1538.t1.CDS1	Gcaud1538.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2780_length_4706_cov_3.815601 3474..4118 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1538.t1.exon1	Gcaud1538.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2780_length_4706_cov_3.815601 3474..4118 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1538.t1.start1	Gcaud1538.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2780_length_4706_cov_3.815601 4116..4118 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1538.t1	Gcaud1538.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2780_length_4706_cov_3.815601 3474..4118 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2780_length_4706_cov_3.815601:3474..4118-
coding sequence from alignment at NODE_2780_length_4706_cov_3.815601:3474..4118-

mRNA sequence

>Gcaud1538.t1 ID=Gcaud1538.t1|Name=Gcaud1538.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=215bp
MRADSTAFQGLFIAICMTPLSSPLTSKRRGLGYPQTTRRSRYLTGVKGVQ
AARKGRHTVQDEAFSTCTSCGSDEIVSASRLLERGSISVKCSQCGTRFTA
TAKEALTITGTPLREIAEAMTEEESEEEGRNDVRVKLYISGLPPRTDSTA
LRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDS
RRLGKRLTVREAIE*

spliced messenger RNA

>Gcaud1538.t1 ID=Gcaud1538.t1|Name=Gcaud1538.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_2780_length_4706_cov_3.815601:3474..4118- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGCAGATTCAACAGCGTTCCAAGGCCTGTTCATTGCCATTTGCAT
GACACCACTTAGCTCGCCGTTAACGAGCAAAAGACGCGGGTTAGGTTACC
CGCAAACGACGCGCCGTTCGCGATACTTGACTGGAGTGAAGGGTGTTCAA
GCTGCCAGGAAAGGGCGCCACACTGTGCAGGACGAAGCGTTTTCAACATG
CACCTCATGCGGTTCTGATGAAATCGTGTCTGCGTCGAGACTGTTGGAGA
GGGGAAGCATCTCGGTGAAGTGTTCTCAATGCGGTACGCGCTTCACGGCG
ACTGCAAAAGAGGCGCTGACCATAACAGGCACTCCACTGCGTGAGATTGC
GGAAGCAATGACGGAGGAAGAGAGTGAAGAGGAAGGTCGCAACGATGTGA
GAGTGAAACTGTACATATCGGGACTTCCGCCGAGAACTGATAGCACGGCG
TTGAGAAGAGCAATCGAAGAGTTTGGGGAAGTTACTGATTGTAGGGTGGT
GATGGATCGCGTGACGGGCCGTTCAAGAGGTTTCGGGTTCGTCACGGTGA
GGGGAAAGTCGACTGCCGCGGCGGTGATTGACACTTTGAGCGGCGACTCG
CGGCGATTGGGAAAGCGGCTCACTGTAAGAGAAGCAATCGAATAA

protein sequence of Gcaud1538.t1

>Gcaud1538.t1 ID=Gcaud1538.t1|Name=Gcaud1538.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MRADSTAFQGLFIAICMTPLSSPLTSKRRGLGYPQTTRRSRYLTGVKGVQ
AARKGRHTVQDEAFSTCTSCGSDEIVSASRLLERGSISVKCSQCGTRFTA
TAKEALTITGTPLREIAEAMTEEESEEEGRNDVRVKLYISGLPPRTDSTA
LRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDS
RRLGKRLTVREAIE*

mRNA from alignment at NODE_2780_length_4706_cov_3.815601:3474..4118-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1538.t1 ID=Gcaud1538.t1|Name=Gcaud1538.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=645bp|location=Sequence derived from alignment at NODE_2780_length_4706_cov_3.815601:3474..4118- (Gracilaria caudata M_176_S67 male)
ATGAGAGCAGATTCAACAGCGTTCCAAGGCCTGTTCATTGCCATTTGCAT
GACACCACTTAGCTCGCCGTTAACGAGCAAAAGACGCGGGTTAGGTTACC
CGCAAACGACGCGCCGTTCGCGATACTTGACTGGAGTGAAGGGTGTTCAA
GCTGCCAGGAAAGGGCGCCACACTGTGCAGGACGAAGCGTTTTCAACATG
CACCTCATGCGGTTCTGATGAAATCGTGTCTGCGTCGAGACTGTTGGAGA
GGGGAAGCATCTCGGTGAAGTGTTCTCAATGCGGTACGCGCTTCACGGCG
ACTGCAAAAGAGGCGCTGACCATAACAGGCACTCCACTGCGTGAGATTGC
GGAAGCAATGACGGAGGAAGAGAGTGAAGAGGAAGGTCGCAACGATGTGA
GAGTGAAACTGTACATATCGGGACTTCCGCCGAGAACTGATAGCACGGCG
TTGAGAAGAGCAATCGAAGAGTTTGGGGAAGTTACTGATTGTAGGGTGGT
GATGGATCGCGTGACGGGCCGTTCAAGAGGTTTCGGGTTCGTCACGGTGA
GGGGAAAGTCGACTGCCGCGGCGGTGATTGACACTTTGAGCGGCGACTCG
CGGCGATTGGGAAAGCGGCTCACTGTAAGAGAAGCAATCGAATAA

Coding sequence (CDS) from alignment at NODE_2780_length_4706_cov_3.815601:3474..4118-

>Gcaud1538.t1 ID=Gcaud1538.t1|Name=Gcaud1538.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=645bp|location=Sequence derived from alignment at NODE_2780_length_4706_cov_3.815601:3474..4118- (Gracilaria caudata M_176_S67 male)
ATGAGAGCAGATTCAACAGCGTTCCAAGGCCTGTTCATTGCCATTTGCAT
GACACCACTTAGCTCGCCGTTAACGAGCAAAAGACGCGGGTTAGGTTACC
CGCAAACGACGCGCCGTTCGCGATACTTGACTGGAGTGAAGGGTGTTCAA
GCTGCCAGGAAAGGGCGCCACACTGTGCAGGACGAAGCGTTTTCAACATG
CACCTCATGCGGTTCTGATGAAATCGTGTCTGCGTCGAGACTGTTGGAGA
GGGGAAGCATCTCGGTGAAGTGTTCTCAATGCGGTACGCGCTTCACGGCG
ACTGCAAAAGAGGCGCTGACCATAACAGGCACTCCACTGCGTGAGATTGC
GGAAGCAATGACGGAGGAAGAGAGTGAAGAGGAAGGTCGCAACGATGTGA
GAGTGAAACTGTACATATCGGGACTTCCGCCGAGAACTGATAGCACGGCG
TTGAGAAGAGCAATCGAAGAGTTTGGGGAAGTTACTGATTGTAGGGTGGT
GATGGATCGCGTGACGGGCCGTTCAAGAGGTTTCGGGTTCGTCACGGTGA
GGGGAAAGTCGACTGCCGCGGCGGTGATTGACACTTTGAGCGGCGACTCG
CGGCGATTGGGAAAGCGGCTCACTGTAAGAGAAGCAATCGAATAA