Gcaud1538.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1538.t1
Unique Name	Gcaud1538.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	215

Homology

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BLAST of Gcaud1538.t1 vs. uniprot
Match: A0A2V3IRQ6_9FLOR (Glycine-rich RNA-binding protein 3, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRQ6_9FLOR)

HSP 1 Score: 223 bits (567), Expect = 6.380e-71
Identity = 118/172 (68.60%), Postives = 136/172 (79.07%), Query Frame = 0

Query:   43 LTGVKGVQAARKGRHTVQDEAFSTCTSCGSDEIVSASRLLERGSISVKCSQCGTRFTATAKEALTITGTPLREIAEAMTEEESEEEGRNDVRVKLYISGLPPRTDSTALRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDSRRLGKRLTVREAIE 214
            L G +   A+R+ R + QDEAFSTC SCGSDE +SAS++LE+GS+ V+CSQC TRFTATAK+ALT+TG PLRE AE   E ++ EE  N V VKLYISGL P+ DS  LR  + EFGEVT  RVV DRVTGRS+GFGFVTVRGKSTAAAVID L+GDSRRLG RL VREAIE
Sbjct:   12 LNGARSFHASRRRRPSPQDEAFSTCPSCGSDEPISASQILEKGSLIVRCSQCRTRFTATAKDALTVTGAPLRESAEHADEGQNAEEDPNVVGVKLYISGLSPKVDSDVLRNTVAEFGEVTYSRVVFDRVTGRSKGFGFVTVRGKSTAAAVIDILNGDSRRLGTRLRVREAIE 183

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BLAST of Gcaud1538.t1 vs. uniprot
Match: A0A1X6P0Z7_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0Z7_PORUM)

HSP 1 Score: 76.6 bits (187), Expect = 4.630e-14
Identity = 50/143 (34.97%), Postives = 67/143 (46.85%), Query Frame = 0

Query:   54 KGRHTVQDEAFSTCTSCGSDEIVSASRLLERG--SISVKCSQCGTRFTATAKEALTITGTPLREIAEAMTEEESEEEGRNDVR---------VKLYISGLPPRTDSTALRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRG 185
            + R     E F  C  CG+D  +  S    RG  ++ V C +C   F A    A+ + G  +     A+T   + +                V+LY+SGLPPR D  AL R    FG+V    VV D+ T RSRGFGFVT+RG
Sbjct:    2 RARRAPAREGFVPCRRCGTDVAIDLSPFA-RGEPTVRVPCPECRVTFEADVTSAIALDGGDIVPAGGAVTAARAADPAXXXXXXXXXVAREGVRLYVSGLPPRVDGAALERLFAPFGDVLSAVVVSDKATRRSRGFGFVTLRG 143

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BLAST of Gcaud1538.t1 vs. uniprot
Match: A0A512BA27_9BACT (RRM domain-containing protein n=1 Tax=Segetibacter aerophilus TaxID=670293 RepID=A0A512BA27_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 7.910e-14
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 0

Query:  135 VKLYISGLPPRTDSTALRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDSRRLGKRLTVREAIE 214
            +KL+++GLP   D T L+   E +GEV   ++VMDR TG+++GFGFV ++ K+ A   I+ L G     GK++ V+EA E
Sbjct:    1 MKLFVAGLPSDFDDTDLKEMFELYGEVISAKIVMDRATGKTKGFGFVEMKNKAEALETIEALDGAGLPRGKKIVVKEAEE 80

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BLAST of Gcaud1538.t1 vs. uniprot
Match: UPI00129A1499 (RNA-binding protein n=1 Tax=Foetidibacter luteolus TaxID=2608880 RepID=UPI00129A1499)

HSP 1 Score: 73.6 bits (179), Expect = 1.960e-13
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 0

Query:  135 VKLYISGLPPRTDSTALRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDSRRLGKRLTVREAIE 214
            +KL+++ LP   D T L+   E +GE+T  RVV DR TGRSRGFGFV +     A   I+TL G + R GK+L+V+EA E
Sbjct:    1 MKLFVASLPADFDDTDLKEMFELYGEITSARVVTDRQTGRSRGFGFVDMPDNEEARQTINTLDGANMR-GKQLSVKEADE 79

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BLAST of Gcaud1538.t1 vs. uniprot
Match: UPI0010AA29B8 (glycine-rich RNA-binding protein 4, mitochondrial-like n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AA29B8)

HSP 1 Score: 73.9 bits (180), Expect = 1.110e-12
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 0

Query:  136 KLYISGLPPRTDSTALRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDSRRLGKRLTVREAIE 214
            KL+I G+  +TD  +LR A +++GEV D R++MDR +GRSRGFGFVT      AA+ ++ L G     G+R+ V  A E
Sbjct:    8 KLFIGGVSYQTDDQSLREAFQKYGEVVDARIIMDRESGRSRGFGFVTFTSNEEAASALEALDGQELH-GRRVRVNYATE 85

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BLAST of Gcaud1538.t1 vs. uniprot
Match: A0A834GIB0_RHOSS (RRM domain-containing protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834GIB0_RHOSS)

HSP 1 Score: 71.6 bits (174), Expect = 1.200e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0

Query:  136 KLYISGLPPRTDSTALRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSG 198
            KL+I G+   TD T+LR A E++GEV + R++MDR TGRSRGFGFVT      A+A +  L G
Sbjct:   41 KLFIGGVSYATDDTSLREAFEKYGEVVEARIIMDRETGRSRGFGFVTYSSGEEASAALQALDG 103

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BLAST of Gcaud1538.t1 vs. uniprot
Match: A0A1W9QI14_9DELT (RNA-binding protein n=1 Tax=Sorangiineae bacterium NIC37A_2 TaxID=1970199 RepID=A0A1W9QI14_9DELT)

HSP 1 Score: 71.6 bits (174), Expect = 1.360e-12
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = 0

Query:  135 VKLYISGLPPRTDSTALRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDSRRLGKRLTVREAIE 214
            +KL++ GL   TD+  LRR  E+FGEV D  V+MDR TGRSRGFGFVT    S   A I+ + G     G+ + V EA E
Sbjct:    3 MKLFVGGLSFNTDNDGLRRGFEKFGEVVDAAVIMDRDTGRSRGFGFVTFANGSDGKAAIEGMDGRDFD-GRTVRVNEAQE 81

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BLAST of Gcaud1538.t1 vs. uniprot
Match: UPI001A961726 (RNA-binding protein n=1 Tax=Segetibacter sp. SYSU D00508 TaxID=2810307 RepID=UPI001A961726)

HSP 1 Score: 70.9 bits (172), Expect = 1.570e-12
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 0

Query:  135 VKLYISGLPPRTDSTALRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDSRRLGKRLTVREAIE 214
            +KL+++GLP   D T L+   E +GEVT  ++V+DR TG+S+GFGFV++   + A   I  L+G   + GK+++V++A E
Sbjct:    1 MKLFVAGLPNDFDETDLKEMFELYGEVTSVKLVVDRATGKSKGFGFVSMADDAEAKETIQALNGAGLKGGKKMSVQQAEE 80

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BLAST of Gcaud1538.t1 vs. uniprot
Match: G7JG73_MEDTR (Putative nucleotide-binding alpha-beta plait domain-containing protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7JG73_MEDTR)

HSP 1 Score: 72.8 bits (177), Expect = 2.270e-12
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 0

Query:  129 GRNDVRVKLYISGLPPRTDSTALRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDSRRLGKRLTVREA 212
            G +DV  + ++ GL   TDS AL +A  +FGE+TD +V+ DR TGRSRGFGFVT   + +    I+ ++G     G+ +TV EA
Sbjct:    2 GSSDVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMNGQDID-GRNITVNEA 84

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BLAST of Gcaud1538.t1 vs. uniprot
Match: A0A2E5G862_9BACT (RNA-binding protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E5G862_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 2.330e-12
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 0

Query:  135 VKLYISGLPPRTDSTALRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDSRRLGKRLTVREA 212
            +KLY+  L  RTD  ALR   E  GEV +  VV DR TGRSRGFGFVT+   S A A I+ L+G     G+ L V EA
Sbjct:    1 MKLYVGNLNFRTDENALRETFEAHGEVEEAVVVADRETGRSRGFGFVTMPDDSQANAAIEALNGTELE-GRTLNVNEA 77

The following BLAST results are available for this feature:

BLAST of Gcaud1538.t1 vs. uniprot

BLAST of Gcaud1538.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IRQ6_9FLOR	6.380e-71	68.60	Glycine-rich RNA-binding protein 3, mitochondrial ...	[more]
A0A1X6P0Z7_PORUM	4.630e-14	34.97	RRM domain-containing protein n=1 Tax=Porphyra umb...	[more]
A0A512BA27_9BACT	7.910e-14	42.50	RRM domain-containing protein n=1 Tax=Segetibacter...	[more]
UPI00129A1499	1.960e-13	48.75	RNA-binding protein n=1 Tax=Foetidibacter luteolus...	[more]
UPI0010AA29B8	1.110e-12	45.57	glycine-rich RNA-binding protein 4, mitochondrial-...	[more]
A0A834GIB0_RHOSS	1.200e-12	52.38	RRM domain-containing protein n=1 Tax=Rhododendron...	[more]
A0A1W9QI14_9DELT	1.360e-12	48.75	RNA-binding protein n=1 Tax=Sorangiineae bacterium...	[more]
UPI001A961726	1.570e-12	41.25	RNA-binding protein n=1 Tax=Segetibacter sp. SYSU ...	[more]
G7JG73_MEDTR	2.270e-12	44.05	Putative nucleotide-binding alpha-beta plait domai...	[more]
A0A2E5G862_9BACT	2.330e-12	51.28	RNA-binding protein n=1 Tax=Phycisphaeraceae bacte...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 136..210 e-value: 1.2E-17 score: 74.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 137..200 e-value: 3.3E-14 score: 52.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 135..214 score: 15.493864
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 114..214 e-value: 5.6E-20 score: 73.8
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 23..212
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..23
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..214
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 135..212

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2780_length_4706_cov_3.815601	contig	NODE_2780_length_4706_cov_3.815601:3474..4118 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1538.t1	Gcaud1538.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_2780_length_4706_cov_3.815601 3474..4118 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1538.t1 ID=Gcaud1538.t1|Name=Gcaud1538.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MRADSTAFQGLFIAICMTPLSSPLTSKRRGLGYPQTTRRSRYLTGVKGVQ
AARKGRHTVQDEAFSTCTSCGSDEIVSASRLLERGSISVKCSQCGTRFTA
TAKEALTITGTPLREIAEAMTEEESEEEGRNDVRVKLYISGLPPRTDSTA
LRRAIEEFGEVTDCRVVMDRVTGRSRGFGFVTVRGKSTAAAVIDTLSGDS
RRLGKRLTVREAIE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf