Gcaud1537.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1537.t1
Unique NameGcaud1537.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2780_length_4706_cov_3.815601contigNODE_2780_length_4706_cov_3.815601:1699..2295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708666.1
PFAMsCBS
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009987,GO:0019725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0065007,GO:0065008
Evalue2.33e-43
EggNOG OGsCOG0517@1|root,2QQ7J@2759|Eukaryota
DescriptionDomain in cystathionine beta-synthase and other proteins.
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1537Gcaud1537Gracilaria caudata M_176_S67 malegeneNODE_2780_length_4706_cov_3.815601 1699..2295 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1537.t1.stop1Gcaud1537.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2780_length_4706_cov_3.815601 1699..1701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1537.t1.CDS1Gcaud1537.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2780_length_4706_cov_3.815601 1699..2295 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1537.t1.exon1Gcaud1537.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2780_length_4706_cov_3.815601 1699..2295 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1537.t1.start1Gcaud1537.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2780_length_4706_cov_3.815601 2293..2295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1537.t1Gcaud1537.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2780_length_4706_cov_3.815601 1699..2295 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1537.t1 ID=Gcaud1537.t1|Name=Gcaud1537.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=199bp
MALLLRSAALFRALAYTNVRALASTPTTAAASEPPAERSHAERSHAERAL
GTVRDVLKTKSEKFFYTFGDSLVYDAVKEMVKHNIGSLIIVEGATKKPVG
IVTETDYLNKVIVRGRSSKSTLVRDIMSTKEFTYVNPDATLSHCMQLMTE
RRIRHIPVVEEGTDKVLGMVSIGDIVSELVAAHKRDAEHMRSFISGSY*
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spliced messenger RNA

>Gcaud1537.t1 ID=Gcaud1537.t1|Name=Gcaud1537.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_2780_length_4706_cov_3.815601:1699..2295- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTCTCCTTCGCTCCGCCGCTCTCTTCCGCGCGCTCGCCTACAC
CAATGTTCGCGCGCTCGCCTCCACGCCCACTACCGCAGCGGCGTCGGAGC
CGCCGGCGGAGCGCTCGCACGCGGAGCGCTCGCACGCAGAGCGTGCGCTG
GGCACTGTACGCGACGTGCTCAAGACCAAGAGCGAGAAGTTCTTCTACAC
CTTTGGCGATTCGCTTGTGTACGACGCCGTCAAGGAGATGGTCAAGCACA
ACATCGGCTCGCTCATCATCGTCGAGGGCGCCACCAAGAAGCCGGTCGGT
ATTGTCACCGAGACCGATTACCTGAACAAGGTCATTGTTAGGGGGCGCTC
CAGCAAGTCCACGCTGGTGCGCGATATCATGAGTACCAAGGAGTTTACCT
ACGTCAACCCGGATGCCACGCTGTCCCACTGCATGCAGCTCATGACCGAG
AGACGCATCCGACATATCCCCGTTGTTGAGGAAGGCACTGACAAGGTGCT
TGGCATGGTGTCCATTGGTGATATTGTCAGCGAGTTGGTTGCCGCTCATA
AGAGGGATGCCGAACACATGAGGTCCTTTATCTCCGGTTCTTATTAG
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protein sequence of Gcaud1537.t1

>Gcaud1537.t1 ID=Gcaud1537.t1|Name=Gcaud1537.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=199bp
MALLLRSAALFRALAYTNVRALASTPTTAAASEPPAERSHAERSHAERAL
GTVRDVLKTKSEKFFYTFGDSLVYDAVKEMVKHNIGSLIIVEGATKKPVG
IVTETDYLNKVIVRGRSSKSTLVRDIMSTKEFTYVNPDATLSHCMQLMTE
RRIRHIPVVEEGTDKVLGMVSIGDIVSELVAAHKRDAEHMRSFISGSY*
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mRNA from alignment at NODE_2780_length_4706_cov_3.815601:1699..2295-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1537.t1 ID=Gcaud1537.t1|Name=Gcaud1537.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_2780_length_4706_cov_3.815601:1699..2295- (Gracilaria caudata M_176_S67 male)
ATGGCGCTTCTCCTTCGCTCCGCCGCTCTCTTCCGCGCGCTCGCCTACAC
CAATGTTCGCGCGCTCGCCTCCACGCCCACTACCGCAGCGGCGTCGGAGC
CGCCGGCGGAGCGCTCGCACGCGGAGCGCTCGCACGCAGAGCGTGCGCTG
GGCACTGTACGCGACGTGCTCAAGACCAAGAGCGAGAAGTTCTTCTACAC
CTTTGGCGATTCGCTTGTGTACGACGCCGTCAAGGAGATGGTCAAGCACA
ACATCGGCTCGCTCATCATCGTCGAGGGCGCCACCAAGAAGCCGGTCGGT
ATTGTCACCGAGACCGATTACCTGAACAAGGTCATTGTTAGGGGGCGCTC
CAGCAAGTCCACGCTGGTGCGCGATATCATGAGTACCAAGGAGTTTACCT
ACGTCAACCCGGATGCCACGCTGTCCCACTGCATGCAGCTCATGACCGAG
AGACGCATCCGACATATCCCCGTTGTTGAGGAAGGCACTGACAAGGTGCT
TGGCATGGTGTCCATTGGTGATATTGTCAGCGAGTTGGTTGCCGCTCATA
AGAGGGATGCCGAACACATGAGGTCCTTTATCTCCGGTTCTTATTAG
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Coding sequence (CDS) from alignment at NODE_2780_length_4706_cov_3.815601:1699..2295-

>Gcaud1537.t1 ID=Gcaud1537.t1|Name=Gcaud1537.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=597bp|location=Sequence derived from alignment at NODE_2780_length_4706_cov_3.815601:1699..2295- (Gracilaria caudata M_176_S67 male)
ATGGCGCTTCTCCTTCGCTCCGCCGCTCTCTTCCGCGCGCTCGCCTACAC
CAATGTTCGCGCGCTCGCCTCCACGCCCACTACCGCAGCGGCGTCGGAGC
CGCCGGCGGAGCGCTCGCACGCGGAGCGCTCGCACGCAGAGCGTGCGCTG
GGCACTGTACGCGACGTGCTCAAGACCAAGAGCGAGAAGTTCTTCTACAC
CTTTGGCGATTCGCTTGTGTACGACGCCGTCAAGGAGATGGTCAAGCACA
ACATCGGCTCGCTCATCATCGTCGAGGGCGCCACCAAGAAGCCGGTCGGT
ATTGTCACCGAGACCGATTACCTGAACAAGGTCATTGTTAGGGGGCGCTC
CAGCAAGTCCACGCTGGTGCGCGATATCATGAGTACCAAGGAGTTTACCT
ACGTCAACCCGGATGCCACGCTGTCCCACTGCATGCAGCTCATGACCGAG
AGACGCATCCGACATATCCCCGTTGTTGAGGAAGGCACTGACAAGGTGCT
TGGCATGGTGTCCATTGGTGATATTGTCAGCGAGTTGGTTGCCGCTCATA
AGAGGGATGCCGAACACATGAGGTCCTTTATCTCCGGTTCTTATTAG
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