Gcaud1533.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1533.t1
Unique Name	Gcaud1533.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	167

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1995_length_7284_cov_5.097873	contig	NODE_1995_length_7284_cov_5.097873:2464..2964 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6669.EFX79445
Preferred name	VRK1
PFAMs	Pkinase
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K08816
GOs	GO:0000003,GO:0000278,GO:0000785,GO:0001708,GO:0003006,GO:0003674,GO:0003682,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0006325,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0006997,GO:0006998,GO:0007030,GO:0007049,GO:0007077,GO:0007084,GO:0007163,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008360,GO:0008406,GO:0009966,GO:0009987,GO:0010256,GO:0010468,GO:0010646,GO:0012505,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022411,GO:0022414,GO:0022603,GO:0022604,GO:0023051,GO:0030154,GO:0030397,GO:0031468,GO:0031491,GO:0031493,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0035173,GO:0035174,GO:0035175,GO:0035184,GO:0035404,GO:0035405,GO:0036211,GO:0040029,GO:0040036,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043987,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045137,GO:0045165,GO:0046777,GO:0048308,GO:0048313,GO:0048513,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051081,GO:0051128,GO:0051276,GO:0060255,GO:0061024,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0072354,GO:0072355,GO:0090166,GO:0090287,GO:0098791,GO:0140096,GO:1901564,GO:1903008,GO:1903047
Evalue	2.1e-11
EggNOG OGs	KOG1164@1\|root,KOG1164@2759\|Eukaryota,38GMB@33154\|Opisthokonta,3BF8J@33208\|Metazoa,3CZXV@33213\|Bilateria,41U9G@6656\|Arthropoda
EC	2.7.11.1
Description	protein serine threonine kinase activity. It is involved in the biological process described with protein phosphorylation
COG category	T
BRITE	ko00000,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1533	Gcaud1533	Gracilaria caudata M_176_S67 male	gene	NODE_1995_length_7284_cov_5.097873 2464..2964 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1533.t1.stop1	Gcaud1533.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1995_length_7284_cov_5.097873 2464..2466 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1533.t1.CDS1	Gcaud1533.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1995_length_7284_cov_5.097873 2464..2964 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1533.t1.exon1	Gcaud1533.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1995_length_7284_cov_5.097873 2464..2964 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1533.t1.start1	Gcaud1533.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1995_length_7284_cov_5.097873 2962..2964 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1533.t1	Gcaud1533.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1995_length_7284_cov_5.097873 2464..2964 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1995_length_7284_cov_5.097873:2464..2964-
coding sequence from alignment at NODE_1995_length_7284_cov_5.097873:2464..2964-

mRNA sequence

>Gcaud1533.t1 ID=Gcaud1533.t1|Name=Gcaud1533.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=167bp
MSQNFVGDVVVGRWRVGEFIGSGATGSVHYVSDLQRRRMNLVIKFGVPHQ
VRPPNSDLAYVCQGMWNERTALLALNNRDPSLKVPKVVESGTHDGVWFII
MTRFGPSICQRWETENRHFPNSTILKITYQVLSILKRIHASGVSHGDIEE
SNILEAGEGQDPNYLL*

spliced messenger RNA

>Gcaud1533.t1 ID=Gcaud1533.t1|Name=Gcaud1533.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp|location=Sequence derived from alignment at NODE_1995_length_7284_cov_5.097873:2464..2964- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCAGAACTTTGTGGGAGACGTTGTAGTTGGACGTTGGAGAGTCGG
TGAGTTTATTGGCTCTGGAGCAACCGGCAGTGTGCATTACGTTTCAGACT
TGCAAAGAAGACGAATGAATTTGGTGATCAAATTTGGGGTCCCGCATCAA
GTTCGACCACCAAACTCAGATTTGGCGTATGTTTGCCAAGGTATGTGGAA
CGAACGAACCGCACTGCTGGCATTGAACAACAGAGACCCCAGCCTAAAAG
TTCCTAAAGTAGTTGAATCTGGAACCCATGATGGTGTATGGTTCATTATC
ATGACCAGGTTTGGACCAAGTATATGCCAACGATGGGAAACAGAGAACAG
GCACTTCCCAAATTCAACTATTCTCAAGATCACTTACCAAGTCCTTTCAA
TTTTGAAGAGAATACACGCAAGCGGCGTGTCGCACGGGGATATTGAGGAA
AGTAACATTTTAGAAGCAGGAGAAGGGCAAGATCCGAATTACTTGTTGTA
A

protein sequence of Gcaud1533.t1

>Gcaud1533.t1 ID=Gcaud1533.t1|Name=Gcaud1533.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=167bp
MSQNFVGDVVVGRWRVGEFIGSGATGSVHYVSDLQRRRMNLVIKFGVPHQ
VRPPNSDLAYVCQGMWNERTALLALNNRDPSLKVPKVVESGTHDGVWFII
MTRFGPSICQRWETENRHFPNSTILKITYQVLSILKRIHASGVSHGDIEE
SNILEAGEGQDPNYLL*

mRNA from alignment at NODE_1995_length_7284_cov_5.097873:2464..2964-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1533.t1 ID=Gcaud1533.t1|Name=Gcaud1533.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp|location=Sequence derived from alignment at NODE_1995_length_7284_cov_5.097873:2464..2964- (Gracilaria caudata M_176_S67 male)
ATGAGTCAGAACTTTGTGGGAGACGTTGTAGTTGGACGTTGGAGAGTCGG
TGAGTTTATTGGCTCTGGAGCAACCGGCAGTGTGCATTACGTTTCAGACT
TGCAAAGAAGACGAATGAATTTGGTGATCAAATTTGGGGTCCCGCATCAA
GTTCGACCACCAAACTCAGATTTGGCGTATGTTTGCCAAGGTATGTGGAA
CGAACGAACCGCACTGCTGGCATTGAACAACAGAGACCCCAGCCTAAAAG
TTCCTAAAGTAGTTGAATCTGGAACCCATGATGGTGTATGGTTCATTATC
ATGACCAGGTTTGGACCAAGTATATGCCAACGATGGGAAACAGAGAACAG
GCACTTCCCAAATTCAACTATTCTCAAGATCACTTACCAAGTCCTTTCAA
TTTTGAAGAGAATACACGCAAGCGGCGTGTCGCACGGGGATATTGAGGAA
AGTAACATTTTAGAAGCAGGAGAAGGGCAAGATCCGAATTACTTGTTGTA
A

Coding sequence (CDS) from alignment at NODE_1995_length_7284_cov_5.097873:2464..2964-

>Gcaud1533.t1 ID=Gcaud1533.t1|Name=Gcaud1533.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=501bp|location=Sequence derived from alignment at NODE_1995_length_7284_cov_5.097873:2464..2964- (Gracilaria caudata M_176_S67 male)
ATGAGTCAGAACTTTGTGGGAGACGTTGTAGTTGGACGTTGGAGAGTCGG
TGAGTTTATTGGCTCTGGAGCAACCGGCAGTGTGCATTACGTTTCAGACT
TGCAAAGAAGACGAATGAATTTGGTGATCAAATTTGGGGTCCCGCATCAA
GTTCGACCACCAAACTCAGATTTGGCGTATGTTTGCCAAGGTATGTGGAA
CGAACGAACCGCACTGCTGGCATTGAACAACAGAGACCCCAGCCTAAAAG
TTCCTAAAGTAGTTGAATCTGGAACCCATGATGGTGTATGGTTCATTATC
ATGACCAGGTTTGGACCAAGTATATGCCAACGATGGGAAACAGAGAACAG
GCACTTCCCAAATTCAACTATTCTCAAGATCACTTACCAAGTCCTTTCAA
TTTTGAAGAGAATACACGCAAGCGGCGTGTCGCACGGGGATATTGAGGAA
AGTAACATTTTAGAAGCAGGAGAAGGGCAAGATCCGAATTACTTGTTGTA
A