Gcaud1532.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1532.t1
Unique Name	Gcaud1532.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	277

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_332_length_29614_cov_4.285540	contig	NODE_332_length_29614_cov_4.285540:27875..28788 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1532	Gcaud1532	Gracilaria caudata M_176_S67 male	gene	NODE_332_length_29614_cov_4.285540 27875..28788 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1532.t1	Gcaud1532.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_332_length_29614_cov_4.285540 27875..28788 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1532.t1.start1	Gcaud1532.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_332_length_29614_cov_4.285540 27875..27877 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1532.t1.CDS1	Gcaud1532.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_332_length_29614_cov_4.285540 27875..28604 +
Gcaud1532.t1.CDS2	Gcaud1532.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_332_length_29614_cov_4.285540 28688..28788 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1532.t1.exon1	Gcaud1532.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_332_length_29614_cov_4.285540 27875..28604 +
Gcaud1532.t1.exon2	Gcaud1532.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_332_length_29614_cov_4.285540 28688..28788 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1532.t1.intron1	Gcaud1532.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_332_length_29614_cov_4.285540 28605..28687 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1532.t1.stop1	Gcaud1532.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_332_length_29614_cov_4.285540 28786..28788 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_332_length_29614_cov_4.285540:27875..28788+
coding sequence from alignment at NODE_332_length_29614_cov_4.285540:27875..28788+

mRNA sequence

>Gcaud1532.t1 ID=Gcaud1532.t1|Name=Gcaud1532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=277bp
MENSPPSAEGEAERERQLASDLLLLHRERQQIKAAFNAASSPLFHKLQKL
ALKRLQMAADHRDLQLASLKANFHLQLQQAYNEFECSKRRLRARMLTVNV
DKRKRLDGMKSVQKKRKRSRGYYEQRAARKATVSPFLNGLEKQGVLRVSV
TPDELMADMNDLLNAIEVPVQKSSVQVDRIAADGVVVLDKIHSSKGTLHY
HDLRLEKGDAVELYSVGKNSGVLKYGGVIMSVNAKEVQIREDNGTDHRIS
VSHLRSGKLSLKLVEGGNTNAAVMNT*

spliced messenger RNA

>Gcaud1532.t1 ID=Gcaud1532.t1|Name=Gcaud1532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=831bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:27875..28788+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAACTCGCCGCCTTCAGCCGAAGGAGAAGCAGAACGAGAGCGCCA
ACTGGCGTCGGACCTACTACTTTTACATCGCGAACGACAGCAAATCAAGG
CGGCGTTCAACGCAGCTTCATCGCCCCTGTTCCACAAGCTGCAGAAGCTG
GCGCTGAAACGACTGCAGATGGCGGCAGATCATCGTGACTTGCAACTTGC
TAGTTTGAAAGCCAATTTCCATCTGCAGCTGCAACAGGCTTACAATGAAT
TTGAATGCAGCAAACGAAGGTTGCGCGCGAGGATGTTGACGGTGAACGTG
GACAAGAGAAAACGACTGGATGGGATGAAGAGCGTACAGAAGAAGAGAAA
GCGCTCAAGAGGTTATTATGAACAACGCGCGGCGAGGAAAGCTACTGTGT
CGCCGTTTCTGAATGGACTGGAGAAACAAGGTGTGTTGAGAGTGAGTGTA
ACGCCTGATGAGCTGATGGCAGACATGAACGACTTGTTGAATGCGATTGA
AGTGCCCGTGCAGAAGTCCTCTGTGCAAGTAGATCGAATAGCGGCGGATG
GTGTGGTGGTACTCGACAAGATTCATTCCTCAAAAGGTACTTTGCACTAC
CATGACTTGCGGCTAGAAAAGGGCGACGCGGTGGAGCTTTATTCAGTGGG
GAAGAACAGCGGCGTGCTCAAGTACGGTGGAGTGATCATGTCGGTGAATG
CTAAAGAAGTGCAAATTCGCGAGGACAATGGAACGGACCACAGAATTTCC
GTAAGCCATCTGCGGTCCGGAAAGCTGTCGCTCAAGCTGGTGGAAGGCGG
CAACACCAACGCGGCGGTGATGAACACCTGA

protein sequence of Gcaud1532.t1

>Gcaud1532.t1 ID=Gcaud1532.t1|Name=Gcaud1532.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=277bp
MENSPPSAEGEAERERQLASDLLLLHRERQQIKAAFNAASSPLFHKLQKL
ALKRLQMAADHRDLQLASLKANFHLQLQQAYNEFECSKRRLRARMLTVNV
DKRKRLDGMKSVQKKRKRSRGYYEQRAARKATVSPFLNGLEKQGVLRVSV
TPDELMADMNDLLNAIEVPVQKSSVQVDRIAADGVVVLDKIHSSKGTLHY
HDLRLEKGDAVELYSVGKNSGVLKYGGVIMSVNAKEVQIREDNGTDHRIS
VSHLRSGKLSLKLVEGGNTNAAVMNT*

mRNA from alignment at NODE_332_length_29614_cov_4.285540:27875..28788+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1532.t1 ID=Gcaud1532.t1|Name=Gcaud1532.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=914bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:27875..28788+ (Gracilaria caudata M_176_S67 male)
ATGGAGAACTCGCCGCCTTCAGCCGAAGGAGAAGCAGAACGAGAGCGCCA
ACTGGCGTCGGACCTACTACTTTTACATCGCGAACGACAGCAAATCAAGG
CGGCGTTCAACGCAGCTTCATCGCCCCTGTTCCACAAGCTGCAGAAGCTG
GCGCTGAAACGACTGCAGATGGCGGCAGATCATCGTGACTTGCAACTTGC
TAGTTTGAAAGCCAATTTCCATCTGCAGCTGCAACAGGCTTACAATGAAT
TTGAATGCAGCAAACGAAGGTTGCGCGCGAGGATGTTGACGGTGAACGTG
GACAAGAGAAAACGACTGGATGGGATGAAGAGCGTACAGAAGAAGAGAAA
GCGCTCAAGAGGTTATTATGAACAACGCGCGGCGAGGAAAGCTACTGTGT
CGCCGTTTCTGAATGGACTGGAGAAACAAGGTGTGTTGAGAGTGAGTGTA
ACGCCTGATGAGCTGATGGCAGACATGAACGACTTGTTGAATGCGATTGA
AGTGCCCGTGCAGAAGTCCTCTGTGCAAGTAGATCGAATAGCGGCGGATG
GTGTGGTGGTACTCGACAAGATTCATTCCTCAAAAGGTACTTTGCACTAC
CATGACTTGCGGCTAGAAAAGGGCGACGCGGTGGAGCTTTATTCAGTGGG
GAAGAACAGCGGCGTGCTCAAGTACGGTGGAGTGATCATGTCGGTGAATG
CTAAAGAAGTGCAAATTCGCGAGGACAATGGTAAGTTGTTTCTGGGGGCA
CATGCGAAAGAAGAAGTCGCGAGCTGACTGCGAGGGTGTGTTTGCTTTTT
GTTGCTGTCTCAGGAACGGACCACAGAATTTCCGTAAGCCATCTGCGGTC
CGGAAAGCTGTCGCTCAAGCTGGTGGAAGGCGGCAACACCAACGCGGCGG
TGATGAACACCTGA

Coding sequence (CDS) from alignment at NODE_332_length_29614_cov_4.285540:27875..28788+

>Gcaud1532.t1 ID=Gcaud1532.t1|Name=Gcaud1532.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=831bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:27875..28788+ (Gracilaria caudata M_176_S67 male)
ATGGAGAACTCGCCGCCTTCAGCCGAAGGAGAAGCAGAACGAGAGCGCCA
ACTGGCGTCGGACCTACTACTTTTACATCGCGAACGACAGCAAATCAAGG
CGGCGTTCAACGCAGCTTCATCGCCCCTGTTCCACAAGCTGCAGAAGCTG
GCGCTGAAACGACTGCAGATGGCGGCAGATCATCGTGACTTGCAACTTGC
TAGTTTGAAAGCCAATTTCCATCTGCAGCTGCAACAGGCTTACAATGAAT
TTGAATGCAGCAAACGAAGGTTGCGCGCGAGGATGTTGACGGTGAACGTG
GACAAGAGAAAACGACTGGATGGGATGAAGAGCGTACAGAAGAAGAGAAA
GCGCTCAAGAGGTTATTATGAACAACGCGCGGCGAGGAAAGCTACTGTGT
CGCCGTTTCTGAATGGACTGGAGAAACAAGGTGTGTTGAGAGTGAGTGTA
ACGCCTGATGAGCTGATGGCAGACATGAACGACTTGTTGAATGCGATTGA
AGTGCCCGTGCAGAAGTCCTCTGTGCAAGTAGATCGAATAGCGGCGGATG
GTGTGGTGGTACTCGACAAGATTCATTCCTCAAAAGGTACTTTGCACTAC
CATGACTTGCGGCTAGAAAAGGGCGACGCGGTGGAGCTTTATTCAGTGGG
GAAGAACAGCGGCGTGCTCAAGTACGGTGGAGTGATCATGTCGGTGAATG
CTAAAGAAGTGCAAATTCGCGAGGACAATGGAACGGACCACAGAATTTCC
GTAAGCCATCTGCGGTCCGGAAAGCTGTCGCTCAAGCTGGTGGAAGGCGG
CAACACCAACGCGGCGGTGATGAACACCTGA