Gcaud1530.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1530.t1
Unique NameGcaud1530.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_332_length_29614_cov_4.285540contigNODE_332_length_29614_cov_4.285540:23822..24499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003289257.1
PFAMsRas
Max annot lvl554915|Amoebozoa
KEGG koko:K06682
KEGG Pathwayko04111,map04111
Evalue3.3e-90
EggNOG OGsCOG1100@1|root,KOG1673@2759|Eukaryota,3X8M2@554915|Amoebozoa
DescriptionGtr1/RagA G protein conserved region
COG categoryS
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1530Gcaud1530Gracilaria caudata M_176_S67 malegeneNODE_332_length_29614_cov_4.285540 23822..24499 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1530.t1.stop1Gcaud1530.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_332_length_29614_cov_4.285540 23822..23824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1530.t1.CDS1Gcaud1530.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_332_length_29614_cov_4.285540 23822..24499 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1530.t1.exon1Gcaud1530.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_332_length_29614_cov_4.285540 23822..24499 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1530.t1.start1Gcaud1530.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_332_length_29614_cov_4.285540 24497..24499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1530.t1Gcaud1530.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_332_length_29614_cov_4.285540 23822..24499 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1530.t1 ID=Gcaud1530.t1|Name=Gcaud1530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=226bp
MSAAGSSDAPRDAQQDSGQPGPSPTAGRMSKAKGPINLQLKVGMLGDSYV
GKTSLMVKYVENKFDEDYIQTLGINFMEKIVSVRERTITFTIFDLGGGEN
EFSQMIPLVCADAAAILFMFDLTRRVTLRSVQEWYRQARGFNQTFIPFLV
GTKFDLFASLSMDKQRDMIAHARKFAKAMRSPLIFTSSSHSINVQKLFKI
VLSKRFNLKCNVPKMSNVGEPILEY*
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spliced messenger RNA

>Gcaud1530.t1 ID=Gcaud1530.t1|Name=Gcaud1530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=678bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:23822..24499- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCAGCGGGAAGCAGTGACGCTCCAAGAGATGCGCAGCAGGACTC
TGGCCAACCAGGTCCGTCGCCGACAGCTGGTCGCATGTCAAAGGCAAAAG
GACCCATCAATCTTCAATTGAAAGTTGGTATGCTCGGCGATTCTTACGTT
GGTAAGACTTCGCTTATGGTGAAGTACGTAGAAAACAAGTTCGATGAGGA
TTACATTCAAACGCTTGGAATCAATTTCATGGAGAAGATTGTGTCCGTCA
GAGAGAGGACTATCACATTTACCATCTTTGATCTCGGTGGAGGTGAGAAC
GAATTCAGCCAGATGATTCCACTTGTCTGTGCTGACGCGGCTGCAATTCT
GTTCATGTTCGATCTTACAAGACGAGTCACTCTGCGCAGCGTTCAGGAGT
GGTATAGACAAGCACGAGGATTCAATCAAACCTTCATTCCATTCTTGGTT
GGAACTAAGTTTGACCTGTTTGCAAGCCTCAGCATGGACAAACAACGCGA
TATGATCGCTCATGCTAGAAAGTTTGCAAAGGCTATGAGAAGTCCACTTA
TTTTTACATCATCCTCGCATTCTATTAATGTGCAGAAGTTGTTCAAAATC
GTTTTGAGCAAGCGGTTTAACTTGAAGTGCAATGTACCCAAGATGTCAAA
TGTTGGCGAACCAATCTTGGAATACTGA
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protein sequence of Gcaud1530.t1

>Gcaud1530.t1 ID=Gcaud1530.t1|Name=Gcaud1530.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=226bp
MSAAGSSDAPRDAQQDSGQPGPSPTAGRMSKAKGPINLQLKVGMLGDSYV
GKTSLMVKYVENKFDEDYIQTLGINFMEKIVSVRERTITFTIFDLGGGEN
EFSQMIPLVCADAAAILFMFDLTRRVTLRSVQEWYRQARGFNQTFIPFLV
GTKFDLFASLSMDKQRDMIAHARKFAKAMRSPLIFTSSSHSINVQKLFKI
VLSKRFNLKCNVPKMSNVGEPILEY*
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mRNA from alignment at NODE_332_length_29614_cov_4.285540:23822..24499-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1530.t1 ID=Gcaud1530.t1|Name=Gcaud1530.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=678bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:23822..24499- (Gracilaria caudata M_176_S67 male)
ATGTCTGCAGCGGGAAGCAGTGACGCTCCAAGAGATGCGCAGCAGGACTC
TGGCCAACCAGGTCCGTCGCCGACAGCTGGTCGCATGTCAAAGGCAAAAG
GACCCATCAATCTTCAATTGAAAGTTGGTATGCTCGGCGATTCTTACGTT
GGTAAGACTTCGCTTATGGTGAAGTACGTAGAAAACAAGTTCGATGAGGA
TTACATTCAAACGCTTGGAATCAATTTCATGGAGAAGATTGTGTCCGTCA
GAGAGAGGACTATCACATTTACCATCTTTGATCTCGGTGGAGGTGAGAAC
GAATTCAGCCAGATGATTCCACTTGTCTGTGCTGACGCGGCTGCAATTCT
GTTCATGTTCGATCTTACAAGACGAGTCACTCTGCGCAGCGTTCAGGAGT
GGTATAGACAAGCACGAGGATTCAATCAAACCTTCATTCCATTCTTGGTT
GGAACTAAGTTTGACCTGTTTGCAAGCCTCAGCATGGACAAACAACGCGA
TATGATCGCTCATGCTAGAAAGTTTGCAAAGGCTATGAGAAGTCCACTTA
TTTTTACATCATCCTCGCATTCTATTAATGTGCAGAAGTTGTTCAAAATC
GTTTTGAGCAAGCGGTTTAACTTGAAGTGCAATGTACCCAAGATGTCAAA
TGTTGGCGAACCAATCTTGGAATACTGA
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Coding sequence (CDS) from alignment at NODE_332_length_29614_cov_4.285540:23822..24499-

>Gcaud1530.t1 ID=Gcaud1530.t1|Name=Gcaud1530.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=678bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:23822..24499- (Gracilaria caudata M_176_S67 male)
ATGTCTGCAGCGGGAAGCAGTGACGCTCCAAGAGATGCGCAGCAGGACTC
TGGCCAACCAGGTCCGTCGCCGACAGCTGGTCGCATGTCAAAGGCAAAAG
GACCCATCAATCTTCAATTGAAAGTTGGTATGCTCGGCGATTCTTACGTT
GGTAAGACTTCGCTTATGGTGAAGTACGTAGAAAACAAGTTCGATGAGGA
TTACATTCAAACGCTTGGAATCAATTTCATGGAGAAGATTGTGTCCGTCA
GAGAGAGGACTATCACATTTACCATCTTTGATCTCGGTGGAGGTGAGAAC
GAATTCAGCCAGATGATTCCACTTGTCTGTGCTGACGCGGCTGCAATTCT
GTTCATGTTCGATCTTACAAGACGAGTCACTCTGCGCAGCGTTCAGGAGT
GGTATAGACAAGCACGAGGATTCAATCAAACCTTCATTCCATTCTTGGTT
GGAACTAAGTTTGACCTGTTTGCAAGCCTCAGCATGGACAAACAACGCGA
TATGATCGCTCATGCTAGAAAGTTTGCAAAGGCTATGAGAAGTCCACTTA
TTTTTACATCATCCTCGCATTCTATTAATGTGCAGAAGTTGTTCAAAATC
GTTTTGAGCAAGCGGTTTAACTTGAAGTGCAATGTACCCAAGATGTCAAA
TGTTGGCGAACCAATCTTGGAATACTGA
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