Gcaud1526.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1526.t1
Unique NameGcaud1526.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_332_length_29614_cov_4.285540contigNODE_332_length_29614_cov_4.285540:16481..17290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703144.1
PFAMsArf
Max annot lvl2759|Eukaryota
KEGG koko:K07937,ko:K07977
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
Evalue1.83e-100
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota
DescriptionGTP binding
COG categoryBDLTU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1526Gcaud1526Gracilaria caudata M_176_S67 malegeneNODE_332_length_29614_cov_4.285540 16481..17290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1526.t1Gcaud1526.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_332_length_29614_cov_4.285540 16481..17290 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1526.t1.stop1Gcaud1526.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_332_length_29614_cov_4.285540 16481..16483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1526.t1.CDS1Gcaud1526.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_332_length_29614_cov_4.285540 16481..16859 -
Gcaud1526.t1.CDS2Gcaud1526.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_332_length_29614_cov_4.285540 17130..17290 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1526.t1.exon1Gcaud1526.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_332_length_29614_cov_4.285540 16481..16859 -
Gcaud1526.t1.exon2Gcaud1526.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_332_length_29614_cov_4.285540 17130..17290 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1526.t1.intron1Gcaud1526.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_332_length_29614_cov_4.285540 16860..17129 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1526.t1.start1Gcaud1526.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_332_length_29614_cov_4.285540 17288..17290 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1526.t1 ID=Gcaud1526.t1|Name=Gcaud1526.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=180bp
MGLSISKVLASLLGQKEVRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
FNVETVDYKNVKFTVWDVGGQDKIRPLWRHYFQNTQGLIYVVDSNDRDRI
PEARDELKKMLSEEELRNATVLVFANKQDLPNAMPVADLTQELGLPNMTN
RKWFVQACCATNGTGLYEGLDWLTENISD*
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spliced messenger RNA

>Gcaud1526.t1 ID=Gcaud1526.t1|Name=Gcaud1526.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:16481..17290- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTCTCTATCTCTAAGGTACTGGCTAGCCTTCTCGGCCAGAAGGA
GGTTCGTATCCTCATGGTCGGTCTTGACGCTGCCGGTAAAACAACCATTT
TGTACAAGCTGAAGCTGGGAGAAATCGTCACCACCATCCCTACTATTGGT
TTTAACGTCGAGACTGTTGATTACAAGAACGTGAAGTTCACTGTATGGGA
TGTCGGAGGTCAGGACAAGATCCGTCCATTATGGAGACATTACTTCCAAA
ATACCCAGGGTCTTATCTATGTGGTTGATAGTAATGATCGGGACCGTATT
CCCGAGGCTCGCGATGAACTGAAGAAGATGCTGTCAGAGGAAGAGCTCCG
AAACGCCACCGTGCTGGTATTCGCTAACAAACAAGATCTTCCCAACGCTA
TGCCGGTTGCTGATCTCACGCAGGAGCTTGGACTACCAAACATGACCAAT
CGCAAATGGTTCGTGCAGGCTTGCTGTGCCACAAACGGAACTGGATTGTA
CGAGGGTTTGGACTGGCTCACAGAAAACATCTCGGACTAG
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protein sequence of Gcaud1526.t1

>Gcaud1526.t1 ID=Gcaud1526.t1|Name=Gcaud1526.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=180bp
MGLSISKVLASLLGQKEVRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
FNVETVDYKNVKFTVWDVGGQDKIRPLWRHYFQNTQGLIYVVDSNDRDRI
PEARDELKKMLSEEELRNATVLVFANKQDLPNAMPVADLTQELGLPNMTN
RKWFVQACCATNGTGLYEGLDWLTENISD*
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mRNA from alignment at NODE_332_length_29614_cov_4.285540:16481..17290-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1526.t1 ID=Gcaud1526.t1|Name=Gcaud1526.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=810bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:16481..17290- (Gracilaria caudata M_176_S67 male)
ATGGGTCTCTCTATCTCTAAGGTACTGGCTAGCCTTCTCGGCCAGAAGGA
GGTTCGTATCCTCATGGTCGGTCTTGACGCTGCCGGTAAAACAACCATTT
TGTACAAGCTGAAGCTGGGAGAAATCGTCACCACCATCCCTACTATTGGT
TTTAACGTCGAGTAAGTTGTAGTTTCTCACGCTTACGTTGCACCGCGCGG
GTGCGCCATGCGCCGGAACGGTTTTCATCCATGCTGCGGGGGAGGGCCTT
ATGTGCACTCGAGTTCCCGACCACCGCGAAACAGCCACATTCCAGCTTCG
TGCGCTTGATATCGTGCTTATTCTTGAATCACTGCGACTGCCCCCTGGTG
CATGGATCTACAACTACTCAAATTCATGCAATCACTGACTTCCTGATTGT
GCGTTGATACTTTCTTTTTTGTCACTTCTAGGACTGTTGATTACAAGAAC
GTGAAGTTCACTGTATGGGATGTCGGAGGTCAGGACAAGATCCGTCCATT
ATGGAGACATTACTTCCAAAATACCCAGGGTCTTATCTATGTGGTTGATA
GTAATGATCGGGACCGTATTCCCGAGGCTCGCGATGAACTGAAGAAGATG
CTGTCAGAGGAAGAGCTCCGAAACGCCACCGTGCTGGTATTCGCTAACAA
ACAAGATCTTCCCAACGCTATGCCGGTTGCTGATCTCACGCAGGAGCTTG
GACTACCAAACATGACCAATCGCAAATGGTTCGTGCAGGCTTGCTGTGCC
ACAAACGGAACTGGATTGTACGAGGGTTTGGACTGGCTCACAGAAAACAT
CTCGGACTAG
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Coding sequence (CDS) from alignment at NODE_332_length_29614_cov_4.285540:16481..17290-

>Gcaud1526.t1 ID=Gcaud1526.t1|Name=Gcaud1526.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=540bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:16481..17290- (Gracilaria caudata M_176_S67 male)
ATGGGTCTCTCTATCTCTAAGGTACTGGCTAGCCTTCTCGGCCAGAAGGA
GGTTCGTATCCTCATGGTCGGTCTTGACGCTGCCGGTAAAACAACCATTT
TGTACAAGCTGAAGCTGGGAGAAATCGTCACCACCATCCCTACTATTGGT
TTTAACGTCGAGACTGTTGATTACAAGAACGTGAAGTTCACTGTATGGGA
TGTCGGAGGTCAGGACAAGATCCGTCCATTATGGAGACATTACTTCCAAA
ATACCCAGGGTCTTATCTATGTGGTTGATAGTAATGATCGGGACCGTATT
CCCGAGGCTCGCGATGAACTGAAGAAGATGCTGTCAGAGGAAGAGCTCCG
AAACGCCACCGTGCTGGTATTCGCTAACAAACAAGATCTTCCCAACGCTA
TGCCGGTTGCTGATCTCACGCAGGAGCTTGGACTACCAAACATGACCAAT
CGCAAATGGTTCGTGCAGGCTTGCTGTGCCACAAACGGAACTGGATTGTA
CGAGGGTTTGGACTGGCTCACAGAAAACATCTCGGACTAG
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