Gcaud151.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud151.t1
Unique NameGcaud151.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1641_length_9336_cov_4.831693contigNODE_1641_length_9336_cov_4.831693:232..852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud151Gcaud151Gracilaria caudata M_176_S67 malegeneNODE_1641_length_9336_cov_4.831693 232..852 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud151.t1.stop1Gcaud151.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1641_length_9336_cov_4.831693 232..234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud151.t1.CDS1Gcaud151.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1641_length_9336_cov_4.831693 232..852 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud151.t1.exon1Gcaud151.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1641_length_9336_cov_4.831693 232..852 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud151.t1.start1Gcaud151.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1641_length_9336_cov_4.831693 850..852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud151.t1Gcaud151.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1641_length_9336_cov_4.831693 232..852 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud151.t1 ID=Gcaud151.t1|Name=Gcaud151.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=207bp
MSDPKPIVSPPHPTRAQNKHGDAGNILNPEDVPIRYGRRLQPFPSPHPEL
KFDPIKWFWVPSFQFDLFFVLSLLSFLFFIAGAITLGTAPTAAGKYAGGG
FLLLVAFVILYLHVNLGINQALRTAICRCYAKRESALRMWESAETRDFIF
QKDVFHTEKSFFYELAVLRDGTVEIRNGNTDRINSEAASLDIGMQTALNA
NAISPV*
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spliced messenger RNA

>Gcaud151.t1 ID=Gcaud151.t1|Name=Gcaud151.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=621bp|location=Sequence derived from alignment at NODE_1641_length_9336_cov_4.831693:232..852- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGATCCTAAGCCCATTGTCTCTCCTCCTCATCCTACGCGCGCGCA
GAACAAGCATGGAGATGCGGGCAACATCCTCAATCCGGAAGATGTTCCCA
TACGTTATGGAAGGCGGCTTCAACCATTTCCAAGCCCTCACCCGGAACTG
AAGTTTGATCCCATCAAGTGGTTCTGGGTGCCCTCGTTTCAGTTCGACCT
GTTTTTCGTTCTTTCGCTACTATCGTTCCTCTTCTTCATCGCCGGAGCCA
TCACCTTAGGCACAGCTCCGACTGCCGCAGGCAAATATGCAGGCGGCGGC
TTTCTGCTATTGGTGGCGTTCGTGATTTTGTACCTGCACGTGAATCTTGG
TATCAATCAGGCTCTTCGTACGGCCATATGTCGCTGTTATGCGAAGAGGG
AAAGTGCGTTACGCATGTGGGAGTCGGCGGAGACTCGTGATTTCATTTTT
CAAAAAGACGTTTTTCATACGGAGAAGTCGTTTTTCTATGAACTCGCCGT
TCTGCGGGACGGCACGGTGGAGATTAGAAATGGAAACACCGACAGGATCA
ATTCCGAAGCCGCAAGCCTTGACATTGGCATGCAGACAGCGCTCAATGCC
AACGCCATCAGTCCAGTCTAG
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protein sequence of Gcaud151.t1

>Gcaud151.t1 ID=Gcaud151.t1|Name=Gcaud151.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=207bp
MSDPKPIVSPPHPTRAQNKHGDAGNILNPEDVPIRYGRRLQPFPSPHPEL
KFDPIKWFWVPSFQFDLFFVLSLLSFLFFIAGAITLGTAPTAAGKYAGGG
FLLLVAFVILYLHVNLGINQALRTAICRCYAKRESALRMWESAETRDFIF
QKDVFHTEKSFFYELAVLRDGTVEIRNGNTDRINSEAASLDIGMQTALNA
NAISPV*
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mRNA from alignment at NODE_1641_length_9336_cov_4.831693:232..852-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud151.t1 ID=Gcaud151.t1|Name=Gcaud151.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=621bp|location=Sequence derived from alignment at NODE_1641_length_9336_cov_4.831693:232..852- (Gracilaria caudata M_176_S67 male)
ATGTCCGATCCTAAGCCCATTGTCTCTCCTCCTCATCCTACGCGCGCGCA
GAACAAGCATGGAGATGCGGGCAACATCCTCAATCCGGAAGATGTTCCCA
TACGTTATGGAAGGCGGCTTCAACCATTTCCAAGCCCTCACCCGGAACTG
AAGTTTGATCCCATCAAGTGGTTCTGGGTGCCCTCGTTTCAGTTCGACCT
GTTTTTCGTTCTTTCGCTACTATCGTTCCTCTTCTTCATCGCCGGAGCCA
TCACCTTAGGCACAGCTCCGACTGCCGCAGGCAAATATGCAGGCGGCGGC
TTTCTGCTATTGGTGGCGTTCGTGATTTTGTACCTGCACGTGAATCTTGG
TATCAATCAGGCTCTTCGTACGGCCATATGTCGCTGTTATGCGAAGAGGG
AAAGTGCGTTACGCATGTGGGAGTCGGCGGAGACTCGTGATTTCATTTTT
CAAAAAGACGTTTTTCATACGGAGAAGTCGTTTTTCTATGAACTCGCCGT
TCTGCGGGACGGCACGGTGGAGATTAGAAATGGAAACACCGACAGGATCA
ATTCCGAAGCCGCAAGCCTTGACATTGGCATGCAGACAGCGCTCAATGCC
AACGCCATCAGTCCAGTCTAG
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Coding sequence (CDS) from alignment at NODE_1641_length_9336_cov_4.831693:232..852-

>Gcaud151.t1 ID=Gcaud151.t1|Name=Gcaud151.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=621bp|location=Sequence derived from alignment at NODE_1641_length_9336_cov_4.831693:232..852- (Gracilaria caudata M_176_S67 male)
ATGTCCGATCCTAAGCCCATTGTCTCTCCTCCTCATCCTACGCGCGCGCA
GAACAAGCATGGAGATGCGGGCAACATCCTCAATCCGGAAGATGTTCCCA
TACGTTATGGAAGGCGGCTTCAACCATTTCCAAGCCCTCACCCGGAACTG
AAGTTTGATCCCATCAAGTGGTTCTGGGTGCCCTCGTTTCAGTTCGACCT
GTTTTTCGTTCTTTCGCTACTATCGTTCCTCTTCTTCATCGCCGGAGCCA
TCACCTTAGGCACAGCTCCGACTGCCGCAGGCAAATATGCAGGCGGCGGC
TTTCTGCTATTGGTGGCGTTCGTGATTTTGTACCTGCACGTGAATCTTGG
TATCAATCAGGCTCTTCGTACGGCCATATGTCGCTGTTATGCGAAGAGGG
AAAGTGCGTTACGCATGTGGGAGTCGGCGGAGACTCGTGATTTCATTTTT
CAAAAAGACGTTTTTCATACGGAGAAGTCGTTTTTCTATGAACTCGCCGT
TCTGCGGGACGGCACGGTGGAGATTAGAAATGGAAACACCGACAGGATCA
ATTCCGAAGCCGCAAGCCTTGACATTGGCATGCAGACAGCGCTCAATGCC
AACGCCATCAGTCCAGTCTAG
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