Gcaud151.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud151.t1
Unique NameGcaud151.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length207
Homology
[Close]
BLAST of Gcaud151.t1 vs. uniprot
Match: A0A2V3INU9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INU9_9FLOR)

HSP 1 Score: 173 bits (439), Expect = 2.090e-51
Identity = 89/180 (49.44%), Postives = 122/180 (67.78%), Query Frame = 0 
Query:    1 MSDPKPIVSPPHP---TRAQNKHGDAGNILNPEDVPIRYGRRLQPFPSPHPELKFDPIKWFWVPSFQFDLFFVLSLLSFLFFIAGAITLGTAPTAA-GKYAGGGFLLLVAFVILYLHVNLGINQALRTAICRCYAKRESALRMWESAETRDFIFQKDVFHTEKSFFYELAVLRDGTVEIR 176
            M+D     +P  P   T+A +KHGD G ILNP +VP+ +G  L+PFP+PH  + F P+KW W P F FD+ F L  LS +  ++ +I L T   A+ GK+ G   L ++A +  +L +N+ INQ +RTAICRCYAKR  A+ +WE+AE +D I+ KDVFH EKSFFY++ VLRDG+VEIR
Sbjct:    1 MADDHDQQTPAQPATTTQAPHKHGDVGEILNPTEVPLVWGCTLKPFPAPHASVYFHPMKWSWFPGFAFDVRFFLFALSAVSTMSFSIILNTVDNASPGKWVGASVLPILAGIAGFLRLNIAINQTIRTAICRCYAKRAVAIAVWENAEQKDLIYAKDVFHAEKSFFYDIVVLRDGSVEIR 180
The following BLAST results are available for this feature:
BLAST of Gcaud151.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3INU9_9FLOR2.090e-5149.44Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 115..206
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..114
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..89
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..66
NoneNo IPR availableTMHMMTMhelixcoord: 96..118
NoneNo IPR availableTMHMMTMhelixcoord: 67..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1641_length_9336_cov_4.831693contigNODE_1641_length_9336_cov_4.831693:232..852 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud151.t1Gcaud151.t1Gracilaria caudata M_176_S67 malemRNANODE_1641_length_9336_cov_4.831693 232..852 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud151.t1 ID=Gcaud151.t1|Name=Gcaud151.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=207bp
MSDPKPIVSPPHPTRAQNKHGDAGNILNPEDVPIRYGRRLQPFPSPHPEL
KFDPIKWFWVPSFQFDLFFVLSLLSFLFFIAGAITLGTAPTAAGKYAGGG
FLLLVAFVILYLHVNLGINQALRTAICRCYAKRESALRMWESAETRDFIF
QKDVFHTEKSFFYELAVLRDGTVEIRNGNTDRINSEAASLDIGMQTALNA
NAISPV*
back to top