Gcaud1462.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1462.t1
Unique NameGcaud1462.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_566_length_21798_cov_4.589994contigNODE_566_length_21798_cov_4.589994:15254..17741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP23299
Preferred nameTUBGCP2
PFAMsSpc97_Spc98
Max annot lvl33208|Metazoa
KEGG koko:K16569
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005881,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007276,GO:0007283,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030953,GO:0031023,GO:0031109,GO:0031122,GO:0031974,GO:0031981,GO:0032153,GO:0032155,GO:0032501,GO:0032504,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044703,GO:0046785,GO:0048232,GO:0048285,GO:0048609,GO:0050789,GO:0050794,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051704,GO:0051726,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0090307,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1902850,GO:1903047
Evalue1.38e-09
EggNOG OGsKOG2001@1|root,KOG2001@2759|Eukaryota,38DYI@33154|Opisthokonta,3B9AM@33208|Metazoa
Descriptionmicrotubule nucleation by interphase microtubule organizing center
COG categoryZ
BRITEko00000,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1462Gcaud1462Gracilaria caudata M_176_S67 malegeneNODE_566_length_21798_cov_4.589994 15254..17741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1462.t1Gcaud1462.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_566_length_21798_cov_4.589994 15254..17741 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1462.t1.start1Gcaud1462.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_566_length_21798_cov_4.589994 15254..15256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1462.t1.CDS1Gcaud1462.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_566_length_21798_cov_4.589994 15254..16540 +
Gcaud1462.t1.CDS2Gcaud1462.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_566_length_21798_cov_4.589994 17380..17422 +
Gcaud1462.t1.CDS3Gcaud1462.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_566_length_21798_cov_4.589994 17701..17741 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1462.t1.exon1Gcaud1462.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_566_length_21798_cov_4.589994 15254..16540 +
Gcaud1462.t1.exon2Gcaud1462.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_566_length_21798_cov_4.589994 17380..17422 +
Gcaud1462.t1.exon3Gcaud1462.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_566_length_21798_cov_4.589994 17701..17741 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1462.t1.intron1Gcaud1462.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_566_length_21798_cov_4.589994 16541..17379 +
Gcaud1462.t1.intron2Gcaud1462.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_566_length_21798_cov_4.589994 17423..17700 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1462.t1.stop1Gcaud1462.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_566_length_21798_cov_4.589994 17739..17741 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=457bp
MEKCFTTKDGFLPICQIWDVLYKTMLTLSADSQPYRTLRHVWNDVITILR
GQLFLLLVHARISDPHNEFFISSSSVVEENLPSFITVEVAENIYSAYKAT
KCTISLSDRDASFSIYPTDEFKHLLSDPVSAQLQIESAAVRWCRRASQNI
SQVFPFLKVKDRIRSLRRYLLHGESSFWRFFFDTLRSTSLPPLTSPESRA
KSEKVLNRILQMTITEYGVTGPLFELEIREKGDIIPTFTLSFVESQILAS
RAHVYCDLFSVTFSIRRAACELQAIYMELQAHRKRMTAAGQFQTAKWYVE
LFELRRRMACFIEGYEWYIQAHVLQPSIDSVLACLSGEGLKGVRCRRAAL
FDTAVEHHEETMDRLLTQCFVGERVIMARLQAIVSACLSVGELVRGLPKD
TSWSESVCSETVEAVERVEKDFNRNYHLLLGLLKSSVKPYRLTLLFKVDD
KLVTFV*
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spliced messenger RNA

>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1371bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAATGCTTCACAACCAAAGATGGCTTTCTTCCAATATGTCAAAT
ATGGGATGTTCTCTACAAGACCATGCTTACTTTGTCTGCAGACTCCCAGC
CGTACAGAACGCTCCGTCATGTTTGGAATGACGTGATAACGATTTTGCGA
GGTCAACTGTTCCTGTTACTGGTTCATGCTCGCATTTCCGATCCTCACAA
TGAGTTCTTCATCTCATCATCTTCAGTTGTGGAAGAAAACCTACCGTCGT
TTATTACTGTTGAAGTCGCAGAAAACATTTACTCAGCTTATAAGGCCACG
AAATGCACTATTTCATTGTCAGACCGAGATGCTTCTTTTTCGATATATCC
AACGGATGAGTTCAAACACCTCTTGTCAGATCCAGTATCCGCGCAGCTCC
AGATAGAATCGGCAGCAGTTCGATGGTGTCGAAGAGCGTCTCAAAACATT
TCCCAAGTGTTCCCATTTCTAAAAGTGAAGGATCGAATTAGAAGTCTCCG
CAGATATTTGCTGCACGGGGAGTCCTCCTTCTGGCGGTTTTTCTTTGACA
CGCTGAGAAGTACCTCTCTTCCTCCACTGACTTCCCCAGAATCTCGTGCA
AAGTCGGAAAAGGTTCTGAACCGAATACTTCAAATGACTATCACTGAGTA
CGGGGTCACTGGTCCACTGTTCGAACTTGAGATTCGCGAGAAGGGAGATA
TAATTCCTACTTTCACTCTCTCATTCGTTGAGAGCCAAATCCTTGCTTCA
AGGGCTCATGTGTACTGTGACCTGTTTTCTGTGACGTTCTCCATTCGACG
GGCTGCGTGCGAGCTGCAGGCGATCTACATGGAGCTGCAGGCGCACAGAA
AAAGGATGACAGCCGCAGGGCAGTTTCAAACAGCCAAATGGTACGTGGAA
CTGTTTGAACTACGGCGAAGAATGGCGTGCTTCATTGAAGGTTATGAGTG
GTACATTCAAGCTCATGTGCTACAGCCAAGCATTGACAGCGTTCTAGCTT
GTCTGTCTGGGGAAGGCTTGAAAGGTGTAAGATGCAGACGGGCCGCCTTG
TTCGATACGGCAGTAGAACATCACGAGGAAACTATGGACAGGCTGTTAAC
ACAATGTTTTGTTGGGGAGAGGGTGATCATGGCCCGGCTACAGGCCATTG
TATCGGCTTGTCTCAGTGTGGGTGAGTTAGTTCGCGGGCTTCCGAAGGAT
ACATCTTGGAGTGAATCAGTGTGTTCAGAAACTGTTGAAGCTGTTGAGCG
CGTCGAGAAGGACTTCAACCGCAACTATCACCTACTGCTTGGTCTGCTCA
AATCAAGCGTGAAACCGTATCGTCTGACCTTGCTTTTCAAGGTCGACGAC
AAACTTGTCACTTTTGTGTGA
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protein sequence of Gcaud1462.t1

>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=457bp
MEKCFTTKDGFLPICQIWDVLYKTMLTLSADSQPYRTLRHVWNDVITILR
GQLFLLLVHARISDPHNEFFISSSSVVEENLPSFITVEVAENIYSAYKAT
KCTISLSDRDASFSIYPTDEFKHLLSDPVSAQLQIESAAVRWCRRASQNI
SQVFPFLKVKDRIRSLRRYLLHGESSFWRFFFDTLRSTSLPPLTSPESRA
KSEKVLNRILQMTITEYGVTGPLFELEIREKGDIIPTFTLSFVESQILAS
RAHVYCDLFSVTFSIRRAACELQAIYMELQAHRKRMTAAGQFQTAKWYVE
LFELRRRMACFIEGYEWYIQAHVLQPSIDSVLACLSGEGLKGVRCRRAAL
FDTAVEHHEETMDRLLTQCFVGERVIMARLQAIVSACLSVGELVRGLPKD
TSWSESVCSETVEAVERVEKDFNRNYHLLLGLLKSSVKPYRLTLLFKVDD
KLVTFV*
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mRNA from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2488bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+ (Gracilaria caudata M_176_S67 male)
ATGGAGAAATGCTTCACAACCAAAGATGGCTTTCTTCCAATATGTCAAAT
ATGGGATGTTCTCTACAAGACCATGCTTACTTTGTCTGCAGACTCCCAGC
CGTACAGAACGCTCCGTCATGTTTGGAATGACGTGATAACGATTTTGCGA
GGTCAACTGTTCCTGTTACTGGTTCATGCTCGCATTTCCGATCCTCACAA
TGAGTTCTTCATCTCATCATCTTCAGTTGTGGAAGAAAACCTACCGTCGT
TTATTACTGTTGAAGTCGCAGAAAACATTTACTCAGCTTATAAGGCCACG
AAATGCACTATTTCATTGTCAGACCGAGATGCTTCTTTTTCGATATATCC
AACGGATGAGTTCAAACACCTCTTGTCAGATCCAGTATCCGCGCAGCTCC
AGATAGAATCGGCAGCAGTTCGATGGTGTCGAAGAGCGTCTCAAAACATT
TCCCAAGTGTTCCCATTTCTAAAAGTGAAGGATCGAATTAGAAGTCTCCG
CAGATATTTGCTGCACGGGGAGTCCTCCTTCTGGCGGTTTTTCTTTGACA
CGCTGAGAAGTACCTCTCTTCCTCCACTGACTTCCCCAGAATCTCGTGCA
AAGTCGGAAAAGGTTCTGAACCGAATACTTCAAATGACTATCACTGAGTA
CGGGGTCACTGGTCCACTGTTCGAACTTGAGATTCGCGAGAAGGGAGATA
TAATTCCTACTTTCACTCTCTCATTCGTTGAGAGCCAAATCCTTGCTTCA
AGGGCTCATGTGTACTGTGACCTGTTTTCTGTGACGTTCTCCATTCGACG
GGCTGCGTGCGAGCTGCAGGCGATCTACATGGAGCTGCAGGCGCACAGAA
AAAGGATGACAGCCGCAGGGCAGTTTCAAACAGCCAAATGGTACGTGGAA
CTGTTTGAACTACGGCGAAGAATGGCGTGCTTCATTGAAGGTTATGAGTG
GTACATTCAAGCTCATGTGCTACAGCCAAGCATTGACAGCGTTCTAGCTT
GTCTGTCTGGGGAAGGCTTGAAAGGTGTAAGATGCAGACGGGCCGCCTTG
TTCGATACGGCAGTAGAACATCACGAGGAAACTATGGACAGGCTGTTAAC
ACAATGTTTTGTTGGGGAGAGGGTGATCATGGCCCGGCTACAGGCCATTG
TATCGGCTTGTCTCAGTGTGGGTGAGTTAGTTCGCGGGCTTCCGAAGGAT
ACATCTTGGAGTGAATCAGTGTGTTCAGAAACTGTTGAAGCTGTTGAGCG
CGTCGAGAAGGACTTCAACCGCAACTATCACCTACTGGTACGCATGTTGA
CTGGTCTTGAGAAGCGCGCCTGCGGGCCGAAGCTGACGATCTTACTGCAA
CAGATTGGGTTGGACGGTGAGCGCGGACGGTAGAGATGGACGCGGGCGAA
GACTCGCACGTCAGGGGAAGCATCCGCCGAGGCAGAGAGGCGCAGAGAAA
CACACCGGCACGGTGTGTTTCGCTGCAAAAAATTGAGTGAAAATGATGAG
AGGCTGAGAAGGACACGTGGAACAAGCGCGTGGCAGCCAGTGGACCACCC
ATGCTGCGTTTTCGGAACATTGACGAACATTGGCGCGCAAATCCAATTCG
AAACCAGCCGGCGGCGGCGTGGATGGTGCCGCACCCTCCACCTTTCGTGG
CGCCAAAGTTCGCGCTAACGGCCGAAGACCGTAACTTGCTCTACGCCTTC
GCCACCTCTGTGACCTGCGCGCGCGCCATTCTTGTCGGAGGCGACGGCTA
CGGCTTCCTAGCACCTTCCTTCCGCATCTTGTTCCAACCACGCGCGCCTC
CGCAGCCCGCGCTCCGTCGCTTCAAAACCTGCGTTTCCGCGCCACTTTCC
TTAGTTTGCCTGCTGTACAGTGACGCCTTGCCCCTGCAGGCTACGCGCTG
ACCCACCTGCCAACCAATTTTTTTTTTTCAAGTCTCGGCCGCGCCGGCTC
TCAACTTCATACAGCCGCCCTTAACCAGCCGCGCTTTCTTCATCCGAACA
GGAGTGCAAACTATTCCGTGCTCGTGTTTAGAGCCAACCGGGGGCTTACA
GTGACCGGCGCGAACCTGCACTCGAGGTCGCGACCCATCTTCGAGGTGTG
TCCTCAATGGCGCCAGTTGTCGACAGCTTGGTCTGCTCAAATCAAGCGTG
AAACCGTATCGTCTGACCTGTACGTTCTCCAACATCTTGGTAATCTGCGA
GATCTTTGCTGTGCACCATCAGCTTTCTACAACTCTGTTGCACGCCGCCC
AATCCGAAAACTCGCAAAACGCACTTTTTGAATTCGATTTTCCCGCCTTT
CACTTTTCTAACCCAATGCTTTCTCTTCTTGAACATCATTACGCGCGTCA
TCTCCCCTGTTCTCGTACATTCTTTTATGCGTACATGCGAATCCCTGTCT
CTCCTTAATCTTACAACCCGTCGTTTTTAATCTTTAAAAATGCGAAGTGC
TTTTCAAGGTCGACGACAAACTTGTCACTTTTGTGTGA
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Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+

>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1371bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+ (Gracilaria caudata M_176_S67 male)
ATGGAGAAATGCTTCACAACCAAAGATGGCTTTCTTCCAATATGTCAAAT
ATGGGATGTTCTCTACAAGACCATGCTTACTTTGTCTGCAGACTCCCAGC
CGTACAGAACGCTCCGTCATGTTTGGAATGACGTGATAACGATTTTGCGA
GGTCAACTGTTCCTGTTACTGGTTCATGCTCGCATTTCCGATCCTCACAA
TGAGTTCTTCATCTCATCATCTTCAGTTGTGGAAGAAAACCTACCGTCGT
TTATTACTGTTGAAGTCGCAGAAAACATTTACTCAGCTTATAAGGCCACG
AAATGCACTATTTCATTGTCAGACCGAGATGCTTCTTTTTCGATATATCC
AACGGATGAGTTCAAACACCTCTTGTCAGATCCAGTATCCGCGCAGCTCC
AGATAGAATCGGCAGCAGTTCGATGGTGTCGAAGAGCGTCTCAAAACATT
TCCCAAGTGTTCCCATTTCTAAAAGTGAAGGATCGAATTAGAAGTCTCCG
CAGATATTTGCTGCACGGGGAGTCCTCCTTCTGGCGGTTTTTCTTTGACA
CGCTGAGAAGTACCTCTCTTCCTCCACTGACTTCCCCAGAATCTCGTGCA
AAGTCGGAAAAGGTTCTGAACCGAATACTTCAAATGACTATCACTGAGTA
CGGGGTCACTGGTCCACTGTTCGAACTTGAGATTCGCGAGAAGGGAGATA
TAATTCCTACTTTCACTCTCTCATTCGTTGAGAGCCAAATCCTTGCTTCA
AGGGCTCATGTGTACTGTGACCTGTTTTCTGTGACGTTCTCCATTCGACG
GGCTGCGTGCGAGCTGCAGGCGATCTACATGGAGCTGCAGGCGCACAGAA
AAAGGATGACAGCCGCAGGGCAGTTTCAAACAGCCAAATGGTACGTGGAA
CTGTTTGAACTACGGCGAAGAATGGCGTGCTTCATTGAAGGTTATGAGTG
GTACATTCAAGCTCATGTGCTACAGCCAAGCATTGACAGCGTTCTAGCTT
GTCTGTCTGGGGAAGGCTTGAAAGGTGTAAGATGCAGACGGGCCGCCTTG
TTCGATACGGCAGTAGAACATCACGAGGAAACTATGGACAGGCTGTTAAC
ACAATGTTTTGTTGGGGAGAGGGTGATCATGGCCCGGCTACAGGCCATTG
TATCGGCTTGTCTCAGTGTGGGTGAGTTAGTTCGCGGGCTTCCGAAGGAT
ACATCTTGGAGTGAATCAGTGTGTTCAGAAACTGTTGAAGCTGTTGAGCG
CGTCGAGAAGGACTTCAACCGCAACTATCACCTACTGCTTGGTCTGCTCA
AATCAAGCGTGAAACCGTATCGTCTGACCTTGCTTTTCAAGGTCGACGAC
AAACTTGTCACTTTTGTGTGA
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