Gcaud1462.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1462.t1
Unique NameGcaud1462.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length457
Homology
BLAST of Gcaud1462.t1 vs. uniprot
Match: A0A2V3IGS5_9FLOR (Spindle pole body component n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGS5_9FLOR)

HSP 1 Score: 473 bits (1217), Expect = 3.180e-160
Identity = 239/445 (53.71%), Postives = 310/445 (69.66%), Query Frame = 0
Query:    1 MEKCFTTKDGFLPICQIWDVLYKTMLTLSADSQPYRTLRHVWNDVITILRGQLFLLLVHARISDPHNEFFISSSSVVEENLPSFITVEVAENIYSAYKATKCTISLSDRDASFSIYPTDEFKHLLSDPVSAQLQIESAAVRWCRRASQNISQVFPFLKVKDRIRSLRRYLLHGESSFWRFFFDTLRSTSLPPLTSPESRAKSEKVLNRILQMTITEYGVTGPLFELEIREKGDIIPTFTLSFVESQILASRAHVYCDLFSVTFSIRRAACELQAIYMELQAHRKRMTAAGQFQTAKWYVELFELRRRMACFIEGYEWYIQAHVLQPSIDSVLACLSGEGLKGVRCRRAALFDTAVEHHEETMDRLLTQCFVGERVIMARLQAIVSACLSVGELVR--------GLPKDTS--WSESVCSETVEAVERVEKDFNRNYHLLLGLLKS 435
            +E C +  D FLP+ ++ DVL   +L L   S  +  L  VWND+++ILR  LFLLLVHARISDP+ EFFI SSSV   NLPSFI++  AENI  AYK TKCT+ LS ++    IYPTDEF  + SDPVS+ LQ ESAA+RW R AS  +S+VFPF +++DRI  LR+YLLHGE SFWRF+FD LRST  P   S E R  +EK+LNR LQ TITEYG+  PLFEL++ E GD++PTFTLS+VESQ+LAS+AHVYCDLFSVTFSIRRAACELQ+ ++EL + RK++ A+ Q    +  V++ ELRRRM CFI+ YE Y+Q HVLQP  D +L  ++    K    +R + F+  V HHE+TMD L  QCFVGE+ +MAR+Q IVS+CL +GE+VR         L K+T   W+     +    +E++E  F RN+ LL+ +L +
Sbjct:   87 IESCMSN-DVFLPLGRVLDVLLDAILDLPEGSYSFIVLNRVWNDMVSILREHLFLLLVHARISDPNKEFFIDSSSVETTNLPSFISLRAAENILCAYKTTKCTLLLSGQETQLPIYPTDEFNRMFSDPVSSSLQAESAALRWRREASDRLSKVFPFNEIRDRITRLRKYLLHGEPSFWRFYFDLLRSTPFPSHASAEYRTHAEKILNRTLQTTITEYGINVPLFELQVGENGDLVPTFTLSYVESQVLASKAHVYCDLFSVTFSIRRAACELQSTFLELLSIRKQIVASRQLLKVEGLVKIVELRRRMGCFIDAYERYLQYHVLQPGFDKILHYIASTPDKRSGSKRESFFEAIVGHHEQTMDNLFAQCFVGEKRVMARVQGIVSSCLHLGEMVRKLSDVFTCSLGKETGSIWNSE---DMALQIEQIEVGFERNFELLVRVLSN 527          
BLAST of Gcaud1462.t1 vs. uniprot
Match: R7Q7H6_CHOCR (Spindle pole body component n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7H6_CHOCR)

HSP 1 Score: 256 bits (655), Expect = 4.390e-75
Identity = 159/449 (35.41%), Postives = 246/449 (54.79%), Query Frame = 0
Query:   12 LPICQIWDVLYKTMLTLSADSQPYRTLRHVWNDVITILRGQLFLLLVHARISDPHNEFFISSSS---VVEENLPSFITVEVAENIYSAYKATKCTISLSDRDASFSIYPTD--EFKHLLSDPVSAQLQIESAAVRWCRRASQNISQVFPFLKVKDRIRSLRRYLLHGESSFWRFFFDTLRST-SLPPLTS----PESRAKSEKVLNRILQMTITEY-------GVTGP----LFELEIREKGDIIPTFTLSFVESQILASRAHVYCDLFSVTFSIRRAACELQAIY--MELQAHRKRMTAAGQFQTAKW--YVELFELRRRMACFIEGYEWYIQAHVLQPSIDSVLACLSGEGLKGVRCR--RAALFDTAVEHHEETMDRLLTQCFVGERVIMARLQAIVSACLSVGELVRGLPKDTSWSESVCSETVEAVERVEKDFNRNYHLLLGLL 433
            L   Q  D + +T+  L      ++ L  +WND++ +LR  +      A + DP ++FFIS  S   VV   LP FI+  VA  +       KC I ++         P +      +L++P+SA+L+IE+A+ RW   A++ +SQ+ PF ++++RI  LR+YLL G+S+FWR FFD LR+  SL  LTS    P  R   E+ ++ IL  T  ++           P    + +L +   GDI+P FTL F ES++LAS+A VYCD+F++ F++RR  CEL+  Y  ++L  H+ + +++ + +  +    V   ELRRRMA F+ G+EWY+Q  VLQP I+ +L  L     +  +    R   FD     HE  MD + +QCFVG+  I ARL  I ++C S+ + V+GL  D     S  ++T+ A E+    F+RN  LL+ LL
Sbjct:  169 LSFPQALDEIQRTVTPLPPTDLAFQVLSKIWNDLVVLLRSHIHQWFTAAIVEDPLHQFFISEESEPAVVPARLPQFISPAVANRLLFVGNVRKCRIVIAKERREPLDNPGNIGALGEILTNPISAELEIEAASFRWREEAAERLSQMLPFRRIRNRIILLRQYLLLGDSAFWRSFFDELRAKPSL--LTSRDLEPRERQHVERSISEILSYTFDDFVNENAALAEKSPHWDSILKLHVTAAGDIVPQFTLGFAESRVLASKASVYCDVFAIAFNVRRVGCELRDTYANIKLLEHQLKKSSSLKIRRERTACLVRTRELRRRMAIFLGGFEWYLQVEVLQPKINRLLTLLDNHLRENTQPSPPRKPFFDVIYSTHEALMDDIFSQCFVGQSQINARLNGIFASCFSLSDFVQGLTVDALQQNSF-TDTLRAFEQ---SFSRNVGLLVRLL 611          
The following BLAST results are available for this feature:
BLAST of Gcaud1462.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IGS5_9FLOR3.180e-16053.71Spindle pole body component n=1 Tax=Gracilariopsis... [more]
R7Q7H6_CHOCR4.390e-7535.41Spindle pole body component n=1 Tax=Chondrus crisp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042241Gamma-tubulin complex component, C-terminal domain superfamilyGENE3D1.20.120.1900coord: 160..449
e-value: 8.8E-25
score: 89.5
IPR040457Gamma tubulin complex component, C-terminalPFAMPF04130GCP_C_terminalcoord: 161..436
e-value: 7.5E-19
score: 68.3
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 19..438

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_566_length_21798_cov_4.589994contigNODE_566_length_21798_cov_4.589994:15254..17741 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1462.t1Gcaud1462.t1Gracilaria caudata M_176_S67 malemRNANODE_566_length_21798_cov_4.589994 15254..17741 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=457bp
MEKCFTTKDGFLPICQIWDVLYKTMLTLSADSQPYRTLRHVWNDVITILR
GQLFLLLVHARISDPHNEFFISSSSVVEENLPSFITVEVAENIYSAYKAT
KCTISLSDRDASFSIYPTDEFKHLLSDPVSAQLQIESAAVRWCRRASQNI
SQVFPFLKVKDRIRSLRRYLLHGESSFWRFFFDTLRSTSLPPLTSPESRA
KSEKVLNRILQMTITEYGVTGPLFELEIREKGDIIPTFTLSFVESQILAS
RAHVYCDLFSVTFSIRRAACELQAIYMELQAHRKRMTAAGQFQTAKWYVE
LFELRRRMACFIEGYEWYIQAHVLQPSIDSVLACLSGEGLKGVRCRRAAL
FDTAVEHHEETMDRLLTQCFVGERVIMARLQAIVSACLSVGELVRGLPKD
TSWSESVCSETVEAVERVEKDFNRNYHLLLGLLKSSVKPYRLTLLFKVDD
KLVTFV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042241GCP_C_sf
IPR040457GCP_C
IPR007259GCP