Gcaud1318.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1318.t1
Unique Name	Gcaud1318.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	229

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_371_length_28318_cov_4.596486	contig	NODE_371_length_28318_cov_4.596486:14464..15150 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173021.ALWA01000036_gene3618
PFAMs	CIA30,NAD_binding_10
Max annot lvl	1117\|Cyanobacteria
Evalue	1.16e-21
EggNOG OGs	COG0702@1\|root,COG0702@2\|Bacteria,1FZZN@1117\|Cyanobacteria
Description	complex i intermediate-associated protein 30
COG category	GM

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1318	Gcaud1318	Gracilaria caudata M_176_S67 male	gene	NODE_371_length_28318_cov_4.596486 14464..15150 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1318.t1.start1	Gcaud1318.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_371_length_28318_cov_4.596486 14464..14466 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1318.t1.CDS1	Gcaud1318.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_371_length_28318_cov_4.596486 14464..15150 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1318.t1.exon1	Gcaud1318.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_371_length_28318_cov_4.596486 14464..15150 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1318.t1.stop1	Gcaud1318.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_371_length_28318_cov_4.596486 15148..15150 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1318.t1	Gcaud1318.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_371_length_28318_cov_4.596486 14464..15150 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_371_length_28318_cov_4.596486:14464..15150+
coding sequence from alignment at NODE_371_length_28318_cov_4.596486:14464..15150+

mRNA sequence

>Gcaud1318.t1 ID=Gcaud1318.t1|Name=Gcaud1318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=229bp
MGNLRDTTTVRKAVEGCDGVISASGTRNFEASSDNHPEAVDYKGLKTLAN
CFFESQLEQDFVMMFSGDTNSFGDQGEHDTKPMEQGVVATSEDYHCTETS
RFVLISSIGVTRPERFPQLQQMGSVLTYKLSGEDALRKSGCAYTIVRPGG
FTDMPAGHFPVILDQGDRIAGSISRADVAEICAEAIFLKSATNVTFECVS
PRPDMVDSSQRTKFSPNMFSQLVSEETN*

spliced messenger RNA

>Gcaud1318.t1 ID=Gcaud1318.t1|Name=Gcaud1318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:14464..15150+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAATTTGCGTGACACTACGACCGTTCGAAAGGCGGTTGAAGGCTG
TGATGGTGTGATCTCTGCCAGCGGAACTCGAAATTTCGAGGCTAGTAGTG
ATAACCATCCGGAAGCTGTTGATTACAAGGGATTAAAAACTCTCGCTAAC
TGCTTCTTTGAGTCCCAGCTGGAGCAAGATTTTGTGATGATGTTTTCTGG
AGATACGAATAGTTTCGGAGATCAAGGGGAACACGATACGAAACCCATGG
AGCAAGGTGTCGTCGCAACATCCGAAGATTATCATTGTACTGAAACGTCC
CGATTTGTTCTTATTTCTTCGATTGGTGTAACCAGGCCGGAAAGATTCCC
GCAACTACAGCAAATGGGTTCCGTTCTTACATACAAACTCAGCGGAGAAG
ATGCGCTGAGAAAGAGCGGTTGTGCCTATACAATCGTTCGTCCAGGTGGA
TTTACTGATATGCCCGCGGGCCATTTTCCTGTAATTCTTGATCAGGGTGA
TCGTATTGCCGGGTCTATCTCTCGTGCAGATGTCGCAGAGATTTGTGCGG
AAGCCATCTTTCTTAAAAGCGCTACCAATGTAACATTCGAATGCGTGTCT
CCCCGCCCTGACATGGTAGACTCTTCACAAAGGACAAAGTTTTCCCCAAA
TATGTTCAGTCAACTTGTATCAGAAGAAACGAACTAG

protein sequence of Gcaud1318.t1

>Gcaud1318.t1 ID=Gcaud1318.t1|Name=Gcaud1318.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=229bp
MGNLRDTTTVRKAVEGCDGVISASGTRNFEASSDNHPEAVDYKGLKTLAN
CFFESQLEQDFVMMFSGDTNSFGDQGEHDTKPMEQGVVATSEDYHCTETS
RFVLISSIGVTRPERFPQLQQMGSVLTYKLSGEDALRKSGCAYTIVRPGG
FTDMPAGHFPVILDQGDRIAGSISRADVAEICAEAIFLKSATNVTFECVS
PRPDMVDSSQRTKFSPNMFSQLVSEETN*

mRNA from alignment at NODE_371_length_28318_cov_4.596486:14464..15150+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1318.t1 ID=Gcaud1318.t1|Name=Gcaud1318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=687bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:14464..15150+ (Gracilaria caudata M_176_S67 male)
ATGGGCAATTTGCGTGACACTACGACCGTTCGAAAGGCGGTTGAAGGCTG
TGATGGTGTGATCTCTGCCAGCGGAACTCGAAATTTCGAGGCTAGTAGTG
ATAACCATCCGGAAGCTGTTGATTACAAGGGATTAAAAACTCTCGCTAAC
TGCTTCTTTGAGTCCCAGCTGGAGCAAGATTTTGTGATGATGTTTTCTGG
AGATACGAATAGTTTCGGAGATCAAGGGGAACACGATACGAAACCCATGG
AGCAAGGTGTCGTCGCAACATCCGAAGATTATCATTGTACTGAAACGTCC
CGATTTGTTCTTATTTCTTCGATTGGTGTAACCAGGCCGGAAAGATTCCC
GCAACTACAGCAAATGGGTTCCGTTCTTACATACAAACTCAGCGGAGAAG
ATGCGCTGAGAAAGAGCGGTTGTGCCTATACAATCGTTCGTCCAGGTGGA
TTTACTGATATGCCCGCGGGCCATTTTCCTGTAATTCTTGATCAGGGTGA
TCGTATTGCCGGGTCTATCTCTCGTGCAGATGTCGCAGAGATTTGTGCGG
AAGCCATCTTTCTTAAAAGCGCTACCAATGTAACATTCGAATGCGTGTCT
CCCCGCCCTGACATGGTAGACTCTTCACAAAGGACAAAGTTTTCCCCAAA
TATGTTCAGTCAACTTGTATCAGAAGAAACGAACTAG

Coding sequence (CDS) from alignment at NODE_371_length_28318_cov_4.596486:14464..15150+

>Gcaud1318.t1 ID=Gcaud1318.t1|Name=Gcaud1318.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=687bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:14464..15150+ (Gracilaria caudata M_176_S67 male)
ATGGGCAATTTGCGTGACACTACGACCGTTCGAAAGGCGGTTGAAGGCTG
TGATGGTGTGATCTCTGCCAGCGGAACTCGAAATTTCGAGGCTAGTAGTG
ATAACCATCCGGAAGCTGTTGATTACAAGGGATTAAAAACTCTCGCTAAC
TGCTTCTTTGAGTCCCAGCTGGAGCAAGATTTTGTGATGATGTTTTCTGG
AGATACGAATAGTTTCGGAGATCAAGGGGAACACGATACGAAACCCATGG
AGCAAGGTGTCGTCGCAACATCCGAAGATTATCATTGTACTGAAACGTCC
CGATTTGTTCTTATTTCTTCGATTGGTGTAACCAGGCCGGAAAGATTCCC
GCAACTACAGCAAATGGGTTCCGTTCTTACATACAAACTCAGCGGAGAAG
ATGCGCTGAGAAAGAGCGGTTGTGCCTATACAATCGTTCGTCCAGGTGGA
TTTACTGATATGCCCGCGGGCCATTTTCCTGTAATTCTTGATCAGGGTGA
TCGTATTGCCGGGTCTATCTCTCGTGCAGATGTCGCAGAGATTTGTGCGG
AAGCCATCTTTCTTAAAAGCGCTACCAATGTAACATTCGAATGCGTGTCT
CCCCGCCCTGACATGGTAGACTCTTCACAAAGGACAAAGTTTTCCCCAAA
TATGTTCAGTCAACTTGTATCAGAAGAAACGAACTAG