mRNA_F-serratus_M_contig1494.3404.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1494.3404.1
Unique NamemRNA_F-serratus_M_contig1494.3404.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1494.3404.1 vs. uniprot
Match: D7FUM4_ECTSI (HTH_OrfB_IS605 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM4_ECTSI)

HSP 1 Score: 365 bits (938), Expect = 2.760e-121
Identity = 242/409 (59.17%), Postives = 268/409 (65.53%), Query Frame = 1 
Query:    7 SEQKQQLPSLTDFWKEPWTASTWGAWSSQNPAAQGLQPSSWMYTRHTANHDHSDSTDFDFGSYSSDCTSFS-ASSSGIPSPGASPPTLRQRWSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPT-----MAPXPGLSPERYGHPPL------------------NPTAHSLPAPSRTLSSXXXXXXXSSIESESS-ALGLYGGSCSGAGASS-----AFQIAGYRTVELLPTAQQRQTLQKWFGVVRWTHNRAVDALRVDPSSSAAELRAAVAKAEAEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGESVMAEPIGTAAQNKALKYRTRKDRLEQVVLRADGFQFGIPYPEYFGYAPLASSAPIPDRVQTDAILVRSTERFYLCI 1143
            S ++QQ   L DFW+EPW   TW +  SQNPAAQGLQPS WMYT H    D   S DFD GS      SFS ASS   PSPG SPP    +W                            XXXXXXXXXX      A       M P PGL+ ER+ HP                       + SL A   T+ +       SS+ES++S AL LYGG+             AFQI GY+T+ELLPTAQQRQTLQKWFGVVRW HNRAVDALRVD S SA  LRAAVA++E+EHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGE+VMAEP+GTAAQNKALKYRTRKDRLEQ+VLRADGFQ+GIPYP+YFGYAPLASS PIPDR+ +DAILVRSTERFYLCI
Sbjct:    2 STEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQD---SLDFDLGS------SFSQASSEDPPSPG-SPPLNHGQWKRGSTASTASSCGSISVSGGAGHQPIEHXXXXXXXXXXAPIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXXXXXXXXPHXXXXSQSLLA---TMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXXPCAFQILGYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGYAPLASSVPIPDRLPSDAILVRSTERFYLCI 397
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1494.3404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUM4_ECTSI2.760e-12159.17HTH_OrfB_IS605 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1494contigF-serratus_M_contig1494:175531..179702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTransposase, putative, helix-turn-helix domain
Ec32 orthologEc-26_002150.1
Exons4
Model size1158
Cds size1158
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1494.3404.1prot_F-serratus_M_contig1494.3404.1Fucus serratus malepolypeptideF-serratus_M_contig1494 175531..179702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929473.115125-CDS-F-serratus_M_contig1494:175530..1756751622929473.115125-CDS-F-serratus_M_contig1494:175530..175675Fucus serratus maleCDSF-serratus_M_contig1494 175531..175675 -
1690962869.2741315-CDS-F-serratus_M_contig1494:175530..1756751690962869.2741315-CDS-F-serratus_M_contig1494:175530..175675Fucus serratus maleCDSF-serratus_M_contig1494 175531..175675 -
1622929473.1316752-CDS-F-serratus_M_contig1494:176770..1770991622929473.1316752-CDS-F-serratus_M_contig1494:176770..177099Fucus serratus maleCDSF-serratus_M_contig1494 176771..177099 -
1690962869.2853925-CDS-F-serratus_M_contig1494:176770..1770991690962869.2853925-CDS-F-serratus_M_contig1494:176770..177099Fucus serratus maleCDSF-serratus_M_contig1494 176771..177099 -
1622929473.1480994-CDS-F-serratus_M_contig1494:177928..1784731622929473.1480994-CDS-F-serratus_M_contig1494:177928..178473Fucus serratus maleCDSF-serratus_M_contig1494 177929..178473 -
1690962869.2929263-CDS-F-serratus_M_contig1494:177928..1784731690962869.2929263-CDS-F-serratus_M_contig1494:177928..178473Fucus serratus maleCDSF-serratus_M_contig1494 177929..178473 -
1622929473.1649992-CDS-F-serratus_M_contig1494:179563..1797021622929473.1649992-CDS-F-serratus_M_contig1494:179563..179702Fucus serratus maleCDSF-serratus_M_contig1494 179564..179702 -
1690962869.3005278-CDS-F-serratus_M_contig1494:179563..1797021690962869.3005278-CDS-F-serratus_M_contig1494:179563..179702Fucus serratus maleCDSF-serratus_M_contig1494 179564..179702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1494.3404.1

>prot_F-serratus_M_contig1494.3404.1 ID=prot_F-serratus_M_contig1494.3404.1|Name=mRNA_F-serratus_M_contig1494.3404.1|organism=Fucus serratus male|type=polypeptide|length=386bp
MTSEQKQQLPSLTDFWKEPWTASTWGAWSSQNPAAQGLQPSSWMYTRHTA
NHDHSDSTDFDFGSYSSDCTSFSASSSGIPSPGASPPTLRQRWSSSSNNG
LVDYHHHHPHHHHHHQQQHQQLRHLHGAARGASPPPPAPTMAPPPGLSPE
RYGHPPLNPTAHSLPAPSRTLSSRSVTSRSSSIESESSALGLYGGSCSGA
GASSAFQIAGYRTVELLPTAQQRQTLQKWFGVVRWTHNRAVDALRVDPSS
SAAELRAAVAKAEAEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAA
ATGESVMAEPIGTAAQNKALKYRTRKDRLEQVVLRADGFQFGIPYPEYFG
YAPLASSAPIPDRVQTDAILVRSTERFYLCIPDTA*
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mRNA from alignment at F-serratus_M_contig1494:175531..179702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1494.3404.1 ID=mRNA_F-serratus_M_contig1494.3404.1|Name=mRNA_F-serratus_M_contig1494.3404.1|organism=Fucus serratus male|type=mRNA|length=4172bp|location=Sequence derived from alignment at F-serratus_M_contig1494:175531..179702- (Fucus serratus male)
ATGACCTCTGAGCAAAAGCAGCAGCTGCCGAGTCTCACGGACTTCTGGAA
GGAACCTTGGACTGCGTCTACTTGGGGAGCATGGAGCAGTCAGAACCCCG
CCGCTCAAGGCCTCCAACCTTCCTCGTGGATGTATACCAGTAAGTTTGTT
TTTTTTCTTGTTTTTTTTTTTAACCTGTCGGTGCGGGCTTGACGGGGCTC
TGCCATGAAACCCTGTTGTTTTGAATCAATCGTGCACCGCGGACCTCTTT
ACTTGACTACTAGTATTAACTAAAACATTGTTATTTTTTGGCGGGGAAGG
GTCTAGCTAGTTCTAAATCTGCTGCAGAATCATATACTTTTAGAATAGAA
GCGAACGCGTCGCCGGGTCTTCTTGCGCTCGTCCCTGTCTCGTCCCCCTC
TCGGCCGGGGAGCAATAGAGGCGGAAAGGACAGGGAGGGGGCGGAATCGA
ACGAGGAATTCGGCGTCCGTGTCATTTTTCAGTTTTCAAAATCACGTGCG
CGTCGAGCCGCGCGTGTGTGTGTGTCCGGCCGATACCCGAGGTCCCAAAA
AGGGACCAGCCCTTCTCGTTCAGAATCCCAACAGTATGCTCTATCGAGAC
AGAGTAGTAACGCTGTGACGATGACTGCTCCGGAGGGTGCTGGAGACCAA
AAGCTTGCTGGCTTGGAGTAGAGTAGAGCATGGGTTCTTTTGTTTGTCGA
GAACTACCGCGTCGAGAGGCGCTTCCTTTCGCGTTCGCCCTGATCCGCGG
CGATTTTCTCGTTGGGCGCGTCCACCCTTGATCTAATGCGTTCCCCCTGC
AGCCGACTCTATCATCCACTACGGCAGAATCTGACCTTTCACGAGTCACA
TCTGTGGCGCATGATGATAGTGCTTGTTATTATAAGTAGTGTAATTGCAT
AAGTCTTGTAAACAAAGTCGAAGCGCTACTCCTCGCTGCCCCCTAACCTC
TCTCGCCACCTCCGGAGGTTCTCGCTTGGAAGTCGCGCCCCGACACACAC
AAAAAAAATGCGCCAAGTCCCAACCCTCGCTCGTAGCTTCCCTTTTACCC
TCTCGACCAAGATTAATATTATAGTAGGAACAGACATGCGTCACACCATC
ATAATACCAGTTCAAGACAAACCAATCGGGGTTTCGCACGCCAGGAATCG
TCCTACAAACACACTGCGTCCCTCTCTCAACACCCGCATGCTTTCTTCTT
CCTCCCCCCGCTCTCTCCCACCCTCACAGGGCACACCGCTAACCACGACC
ACAGCGACAGCACTGACTTCGACTTCGGGTCGTACTCGAGCGACTGCACT
TCGTTTTCGGCGTCGTCTTCCGGAATACCGTCTCCGGGAGCATCGCCCCC
CACTCTCCGCCAACGTTGGTCGAGCTCAAGCAACAACGGACTGGTCGACT
ACCACCACCACCATCCCCACCACCACCATCACCATCAACAGCAGCACCAG
CAGCTCCGTCACCTTCATGGCGCAGCTCGCGGGGCTTCACCCCCCCCGCC
CGCCCCGACGATGGCTCCCCCGCCGGGGCTCTCGCCCGAACGATACGGGC
ACCCCCCCCTCAACCCCACCGCGCACTCATTGCCTGCGCCCTCGCGCACG
CTCAGTAGTCGGTCGGTGACGAGCCGATCTTCAAGCATTGAATCCGAGAG
CTCGGCGCTTGGACTATACGGAGGTAGCTGCTCGGGAGCGGGGGCTTCTA
GCGCCTTCCAAATCGCTGGCTACCGGACCGTGGAGCTGCTCCCGACGGCT
CAGCAGCGGCAAACACTCCAGAAGGTACGCATCATGCAGATCGAATGGCA
AGGGGGTGTTTTTCTTCCCGCTCAGTACCATGGAGCATTATTTCGAGGTC
AAAACAAAAGCATACAGTATACTTAGTATATATAGTGTTGTGATAATAAT
TAAGAAGCGTTAGAGCCGATATTTTCATATTTCACACGTACATGTACTAC
TTGTGAAACGCTACATTTCGATCTGCAGAACTTTTCATTGAAGGAGCACA
ACATCGAAGTTATCTGCGAACACACCCAAATAATGGTCTGACCCCGTGGC
GAGTAGCGTCGAGTGTTTGGTCGTCTTTGCCGTGGGTGGAACCGTTATTC
AACCATTCCGACTTAAAACAAGTGGGCTTAGCAGCGATGTGCTTAAACTG
CTGAAAAAAAAATGATTGATTAATATTGCTTGAATTCTCACATAAGCTCA
TGTCAAAAATCCAGCCCGTGGTCACAAGGTAGAAAAACGCCATTCGGAAG
GAAAATGAAGGAAAGCAGTTCGATGCGACAATCCACTATTAATAGTAGAC
CTTGGAGAAATAATCTAGATCCTCTCCGAGTTGCTCCCGCTCCTCAACCT
CGACGCGCTTGATTTTTTGCAAATAACTCAATCCCCTAGAATTCAAACGG
CATCGAAGGTGTGCTTTTCTTAGAATCTAAAGATCCTCCACACCTTTCCA
CTAAGTTGAAAGTACAACATCTCCGACGAATCTATCCGCAATGGTCCATC
CTTCTCTCTCTTTCTCTTGCTCTAACTCATGTCGTCCCCTCATCCCTCTC
CCTTCCTCTCCCACCCTGATAATATCTGCGGTGGCTTCCCTCGGAACGAT
CAGTGGTTCGGAGTCGTTCGCTGGACACACAATCGCGCCGTCGATGCCCT
TCGCGTCGATCCCAGCTCGTCGGCCGCTGAGCTCCGCGCCGCCGTCGCCA
AGGCGGAGGCCGAGCACGAGTGGGCGGCTGCCGTGCCTCTCGCCATCCGC
GACGCAACAGTGGCGCAGCTCGTGGGCGCGCTGCACCTAGCCCAGCGGTC
GGCGGAGGTGGCTGCGGCGGCCACGGGAGAGAGCGTGATGGCGGAGCCTA
TCGGGACGGCGGCGCAGAACAAGGCGCTCAAGTACCGCACGCGGAAGGAC
AGACTAGAGCAAGTAGTTCTCAGGGCCGACGGGTGAGCACGTAGTTATGG
CTTTAGAAGAGGGTTTCTCCTGGATGTGCATTATCGACCCTCGCCCTTCG
CCGTGGAGGCCTCTCCACAATCTTCTCCACGATGTCAATGCGCTTCTGTT
TTTAGCACCCCTGTGAAACAACGGTAAACTCTGCTGGTGACTATTTTTCA
AACATTCTCCCGCTTTGATAACTTTGTGGTTCTTTAGAACCCCTTTCAAT
ATGCTATCGCGGCTAAGATTGTGTTCAGTGGCATCACTTGACCCGGTATT
ATTGTGTTGCGTTAAAGTTTTCCCACCTCCATGACCCCCAAAAGAGCAGA
AAGTGGCCTCTTCTTCATCAGGCCGCTCGCTGTTCAGGTGTTGCCTGCCG
TACATGAGTCCCAACGTCGTAGTTTTTCCTCTCGAGATAGAAGTTGGCGT
TGAGGAGTGACGTAACATGCGCGAGCGAGACTTTGACAGGAATGTCTTTG
ATGGCCACGTTGTGCATTGCAGGCAATGTATAAGAAGAGTCGTTCCTACC
CACTTTTGTGTGTGCCGGTATTAATCAATCGAGAATCACCTCGATAGTGT
AATGTCTGCCCTTGATGGCAAGAAGGAACACCCGCCATCATCATCAGTTG
ATGTCTGAAAGATAGCTCGCCGCGGTACACACAAACAAAAAAACGTTTCA
GATTTTTCACACGCCAAAAAACAATTATTGAACAATCTCGGATATATAAC
CTGTGAAGGCGGTTCATTCTCGGGGGCGGTGGGTTTCTGTCAAACTTGGC
GACTTCAACCGTTTCGGGGTTATTTAGGGTTCGAGATGCCCTTTTTTCCC
GCTCCCTGAACTTCACGTGGCTTCTTAGTGAGACCCCCCCCGTGTGGTTG
CATCATCCCACGGATTGGCTTCTATAGCCAGAACCGAAACCTTTTCTGTG
GCACCCTCACATTTTTCAAGACCGGCAGCTCCACAATCCGGAGCTCTCGC
TTACATGCCAAGCGTGCCACGCGTGCGACCACTCAGTTTTCCCTGTCGCT
GATCGATACGTGATCCCACCGCTAATTTCCCTTCCCTTCCCGCTTCGTTT
GACAACGTACCTAATTAATGACCACAGGTTCCAGTTCGGGATACCTTACC
CGGAGTACTTCGGCTACGCGCCGCTCGCCTCGTCCGCCCCTATTCCAGAC
CGGGTGCAGACCGACGCGATCCTCGTCCGTAGCACCGAGCGGTTCTACCT
CTGCATCCCGGACACGGCCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1494:175531..179702-

>mRNA_F-serratus_M_contig1494.3404.1 ID=mRNA_F-serratus_M_contig1494.3404.1|Name=mRNA_F-serratus_M_contig1494.3404.1|organism=Fucus serratus male|type=CDS|length=2316bp|location=Sequence derived from alignment at F-serratus_M_contig1494:175531..179702- (Fucus serratus male)
ATGACCTCTGAGCAAAAGCAGCAGCTGCCGAGTCTCACGGACTTCTGGAA
GGAACCTTGGACTGCGTCTACTTGGGGAGCATGGAGCAGTCAGAACCCCG
CCGCTCAAGGCCTCCAACCTTCCTCGTGGATGTATACCAATGACCTCTGA
GCAAAAGCAGCAGCTGCCGAGTCTCACGGACTTCTGGAAGGAACCTTGGA
CTGCGTCTACTTGGGGAGCATGGAGCAGTCAGAACCCCGCCGCTCAAGGC
CTCCAACCTTCCTCGTGGATGTATACCAGGCACACCGCTAACCACGACCA
CAGCGACAGCACTGACTTCGACTTCGGGTCGTACTCGAGCGACTGCACTT
CGTTTTCGGCGTCGTCTTCCGGAATACCGTCTCCGGGAGCATCGCCCCCC
ACTCTCCGCCAACGTTGGTCGAGCTCAAGCAACAACGGACTGGTCGACTA
CCACCACCACCATCCCCACCACCACCATCACCATCAACAGCAGCACCAGC
AGCTCCGTCACCTTCATGGCGCAGCTCGCGGGGCTTCACCCCCCCCGCCC
GCCCCGACGATGGCTCCCCCGCCGGGGCTCTCGCCCGAACGATACGGGCA
CCCCCCCCTCAACCCCACCGCGCACTCATTGCCTGCGCCCTCGCGCACGC
TCAGTAGTCGGTCGGTGACGAGCCGATCTTCAAGCATTGAATCCGAGAGC
TCGGCGCTTGGACTATACGGAGGTAGCTGCTCGGGAGCGGGGGCTTCTAG
CGCCTTCCAAATCGCTGGCTACCGGACCGTGGAGCTGCTCCCGACGGCTC
AGCAGCGGCAAACACTCCAGAAGGGCACACCGCTAACCACGACCACAGCG
ACAGCACTGACTTCGACTTCGGGTCGTACTCGAGCGACTGCACTTCGTTT
TCGGCGTCGTCTTCCGGAATACCGTCTCCGGGAGCATCGCCCCCCACTCT
CCGCCAACGTTGGTCGAGCTCAAGCAACAACGGACTGGTCGACTACCACC
ACCACCATCCCCACCACCACCATCACCATCAACAGCAGCACCAGCAGCTC
CGTCACCTTCATGGCGCAGCTCGCGGGGCTTCACCCCCCCCGCCCGCCCC
GACGATGGCTCCCCCGCCGGGGCTCTCGCCCGAACGATACGGGCACCCCC
CCCTCAACCCCACCGCGCACTCATTGCCTGCGCCCTCGCGCACGCTCAGT
AGTCGGTCGGTGACGAGCCGATCTTCAAGCATTGAATCCGAGAGCTCGGC
GCTTGGACTATACGGAGGTAGCTGCTCGGGAGCGGGGGCTTCTAGCGCCT
TCCAAATCGCTGGCTACCGGACCGTGGAGCTGCTCCCGACGGCTCAGCAG
CGGCAAACACTCCAGAAGTGGTTCGGAGTCGTTCGCTGGACACACAATCG
CGCCGTCGATGCCCTTCGCGTCGATCCCAGCTCGTCGGCCGCTGAGCTCC
GCGCCGCCGTCGCCAAGGCGGAGGCCGAGCACGAGTGGGCGGCTGCCGTG
CCTCTCGCCATCCGCGACGCAACAGTGGCGCAGCTCGTGGGCGCGCTGCA
CCTAGCCCAGCGGTCGGCGGAGGTGGCTGCGGCGGCCACGGGAGAGAGCG
TGATGGCGGAGCCTATCGGGACGGCGGCGCAGAACAAGGCGCTCAAGTAC
CGCACGCGGAAGGACAGACTAGAGCAAGTAGTTCTCAGGGCCGACGGTGG
TTCGGAGTCGTTCGCTGGACACACAATCGCGCCGTCGATGCCCTTCGCGT
CGATCCCAGCTCGTCGGCCGCTGAGCTCCGCGCCGCCGTCGCCAAGGCGG
AGGCCGAGCACGAGTGGGCGGCTGCCGTGCCTCTCGCCATCCGCGACGCA
ACAGTGGCGCAGCTCGTGGGCGCGCTGCACCTAGCCCAGCGGTCGGCGGA
GGTGGCTGCGGCGGCCACGGGAGAGAGCGTGATGGCGGAGCCTATCGGGA
CGGCGGCGCAGAACAAGGCGCTCAAGTACCGCACGCGGAAGGACAGACTA
GAGCAAGTAGTTCTCAGGGCCGACGGGTTCCAGTTCGGGATACCTTACCC
GGAGTACTTCGGCTACGCGCCGCTCGCCTCGTCCGCCCCTATTCCAGACC
GGGTGCAGACCGACGCGATCCTCGTCCGTAGCACCGAGCGGTTCTACCTC
TGCATCCCGGACACGGCCTGAGTTCCAGTTCGGGATACCTTACCCGGAGT
ACTTCGGCTACGCGCCGCTCGCCTCGTCCGCCCCTATTCCAGACCGGGTG
CAGACCGACGCGATCCTCGTCCGTAGCACCGAGCGGTTCTACCTCTGCAT
CCCGGACACGGCCTGA
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