mRNA_F-serratus_M_contig1468.3271.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 299 bits (765), Expect = 4.190e-93 Identity = 166/415 (40.00%), Postives = 247/415 (59.52%), Query Frame = 1
Query: 259 VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYG-GHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
V +S+R L A A ++ LRHFD +QAF+++D+DE++++ +PE G + +LNK++YGL Q R W++ + +GF Q AD CV R + +G + +VVH+DDI + + ++ D+F +L +K++GD +Y GC R+ LK Q Y E + F V+ +IP G LS+ D+ EE +P+RE +G+LMW AT TRPDIA AVR VAR+C +P H +A + I Y++ T + GIT+ G GL ME + D+D+ + RRSVSG + M G ISW SR Q+ T+EAEYV+L++V+ +VLFLRQV FM P + + VFEDN+ AI+LA N ++ +KH DV+HH +R+ + + + +V S QHAD LTK L
Sbjct: 16 VAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFS-IGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 299 bits (765), Expect = 5.120e-91 Identity = 166/415 (40.00%), Postives = 247/415 (59.52%), Query Frame = 1
Query: 259 VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYG-GHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
V +S+R L A A ++ LRHFD +QAF+++D+DE++++ +PE G + +LNK++YGL Q R W++ + +GF Q AD CV R + +G + +VVH+DDI + + ++ D+F +L +K++GD +Y GC R+ LK Q Y E + F V+ +IP G LS+ D+ EE +P+RE +G+LMW AT TRPDIA AVR VAR+C +P H +A + I Y++ T + GIT+ G GL ME + D+D+ + RRSVSG + M G ISW SR Q+ T+EAEYV+L++V+ +VLFLRQV FM P + + VFEDN+ AI+LA N ++ +KH DV+HH +R+ + + + +V S QHAD LTK L
Sbjct: 190 VAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFS-IGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 596
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 293 bits (751), Expect = 4.020e-89 Identity = 189/522 (36.21%), Postives = 294/522 (56.32%), Query Frame = 1
Query: 7 MQATLDVPEPRNRRQAMESHEWDEWRKAEETEMLGMVENCFYNQVARPKNKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQ-----VEAA--------SIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYGGHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
M AT +VP + +A H+ DEW+KA +E+ ++ N + V +P ++ IG + ++ K + G+V +YK RLVA+G+ Q E A S+R +LA + E+ D + AFL +++EEIY+E+PE +E V L +++YGL Q R WN + GFE A ADPCV + +GE E +V +++DD+L + +A + A + +KF++KD+G A + +G I + + R L Q Y ES++K+F + K P G L+KADEPQ E+K + K PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A + + +YLL TK+ GI Y G G EAY+D+D+ D RRSVSG + ML + W S Q+ A ++EAEY+ALS+ V + +++R++ + + +VGA ++EDN+ A+ LA N RTKH D+++H +R+ + V + YV +++Q A +TK L
Sbjct: 59 MAATEEVP--KTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLAYFMTKGL 574
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 288 bits (738), Expect = 9.070e-89 Identity = 161/409 (39.36%), Postives = 240/409 (58.68%), Query Frame = 1
Query: 277 RKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYG-GHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
+ L A A + +L HFD EQAF++++++E++Y+ +P+ G + +L K++YGL Q R W+ + +GFEQ AD CV R + DG +++VVH+DDI A V ++ D+F A+L + +K++G+ +Y GC RN++T L Q + + + + V +P +SG LS D + E FP+RE VG+LMW AT TRPDIA AVR VAR+C +P H A M I Y T +GI++ G G ++ Y D+DF + RRSVSG + GA+SW SR Q+ T+EAEYVAL +VV ++LFLRQ+ FM P + + + VFEDN+ AI+LA N ++ +KH DV+HH +R+ + + + V +V S Q AD LTK L
Sbjct: 46 KMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 446
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE) HSP 1 Score: 303 bits (775), Expect = 1.540e-87 Identity = 185/493 (37.53%), Postives = 289/493 (58.62%), Query Frame = 1
Query: 73 DEWRKAEETEMLGMVENCFYNQVARPKNKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQ-------------VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMV-VVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPT--LSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYGGHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQV-QEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
D W++A + E +EN + V P K+ + +K +++ K GK+ K+K RLV +G Q V +SIR LLA AA +D ++ DA AFL+ D+ EEIY+ PE +QE G V RL K++YGL Q R WN K + IG Q+K DPC+ K + +MV V V +DD+L D+ ++L + FK+ D+G+A++ +G I+R+R+ +++ DQ Y+++++ RF ++ AT P LSK +P +P+E+++ + PY+EAVG+L++ + + RPDIA AV V+RF NPGPAH AV I +Y+ T +W + Y G + Y DSDF + +D R+SV+G V+++ +G++SW ++ Q TA T+EAEY+ALS + L+LR + +E + PS R+ + +F DN+ A+ LA N RTKH DV+HH +R+ + ++ YV + D AD LTK L
Sbjct: 853 DLWKQAMDVEYKSQLENGTWELVDLPPGKVPLNSKWVFRTKRDVTGKIVKHKARLVVKGCAQRKGLDFEETFSPVVRYSSIRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQE-SGKVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIYYK--SSQKKMVFVAVWVDDLLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGMEN-CNPAATPLDPNIKLSKDQQPSSPDERKKMEAIPYQEAVGSLLFASQVCRPDIAFAVSLVSRFNSNPGPAHWAAVKRILRYMKGTSDWKLEYDGTKSSE-ITGYCDSDFASDVDERKSVTGYVFLMCDGSVSWGTKKQPTTALSTTEAEYMALSAATQEALWLRGLSEELVPPSERI-PLRIFVDNQGALNLAQNGSYQSRTKHIDVRHHFLREKISEKLIKPTYVPTSDMVADSLTKSL 1339
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 297 bits (761), Expect = 2.200e-86 Identity = 165/415 (39.76%), Postives = 247/415 (59.52%), Query Frame = 1
Query: 259 VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYG-GHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
V +S+R L A A ++ LRHFD +QAF+++D+DE++++ +PE G + +LNK++YGL Q R W++ + +GF Q AD CV R + +G + +VVH+DDI + + ++ D+F +L +K++GD +Y GC R+ LK Q Y E + F V+ +IP G LS+ D+ EE +P+RE +G+LMW AT TRPDIA AVR VAR+C +P H +A + I Y++ T + GIT+ G GL ME + D+D+ + RRSVSG + M G ISW SR Q+ T+EAEYV+L++V+ +VLFLRQV FM P + + VFEDN+ AI+LA N ++ +KH DV+HH +R+ + + + +V S QHA+ LTK L
Sbjct: 711 VAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFS-IGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKAL 1117
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 289 bits (740), Expect = 2.640e-86 Identity = 178/506 (35.18%), Postives = 282/506 (55.73%), Query Frame = 1
Query: 28 PEPRNRRQAMESHEWDEWRKAEETEMLGMVENCFYNQVAR-PKNKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQ-------------VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYGGHGC-GLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
PEP + ++A+ S W KA E+ G++ + A+ P+ VI + ++K K + GK+ K K RLVA+GF Q AASIR ++A A + EL H D EQAF ++ +D E+ +++P G + RLNK++YGL Q R + + D+ IGFEQ+ +DPCV+R ++ E ++ +H+DDIL + + + L K++G+ +++GC +R+R+ ++ Q Y+ S+++RF++ + + IPA S A++ ++ E EE P+RE VG LMW A TRP+ + AVRTVAR P + KA I YL T + Y + Y D+DF + RRSVSGA+ ++A +SW S Q+ + TSEAEY+A+ + V + LF+ + + + PS + ++VFEDNE AI LA N +S R+KH DV+HH +R+ ++ + V +V S++QHAD+LTK L
Sbjct: 211 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 708
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 283 bits (725), Expect = 9.150e-86 Identity = 175/488 (35.86%), Postives = 264/488 (54.10%), Query Frame = 1
Query: 79 WRKAEETEMLGMVENCFYNQV-ARPKNKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQV-------------EAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYGGHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
W +A E G + ++ V P+ + + +K + K +DGK+EK+K RLVA+GF Q+ +ASI+ +LA A K +L H+D +QAF A +DE++++ +P E V + +AIYGL Q GR W D + GFEQ KADPCV RK+ D D IL D + A+ L + F KD+G+ ++ GC + R+ + L+ Q Y++S+V RFDV+ + IPA+ G K D+ E +P REA+G++MW +T +RPDI+ AVR VAR P H KA++ I YL T++ GITY G GL + Y D+ + A + RRSVSG + IS S+ Q + + ++EAEY+A E V + LF+R V F+ P ++ V EDN+ A+ L N +S R+KH DV++H +R + + + +V + +QHAD+LTK L
Sbjct: 15 WEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLAS-LNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGE-------WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASY-ADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKAL 492
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 275 bits (702), Expect = 1.040e-83 Identity = 151/415 (36.39%), Postives = 241/415 (58.07%), Query Frame = 1
Query: 259 VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYG-GHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
V +S+R L A A ++ +L HFD +QAF+++++DE++++ +P+ G + +L K++YGL Q R W++ + ++GF Q AD CV R + +G M++VVH+DDI A V + D+F +L + +K++G+ +Y C R+ + L+ Q + E + + ++ +P L+ DE E P+RE VG+LMW AT TRPDIA AVR VAR+C +P H KA + I Y+ T GIT+ G G+ M+ + D+D+ + RRSVSG + M G ++W SR Q+ T+EAEYVA+++V+ +VLFLRQV FM P + + VFEDN+ AI++A N + +KH DV+HH +R+ + + + + +V + QHAD LTK +
Sbjct: 16 VSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFA-VGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSV-KLTDFDE------NEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAI 422
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A438FEW0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEW0_VITVI) HSP 1 Score: 291 bits (745), Expect = 1.110e-83 Identity = 183/508 (36.02%), Postives = 295/508 (58.07%), Query Frame = 1
Query: 31 EPRNRRQAMESHEWDEWRKAEETEMLGMVENCFYNQVARPKNKLVIGTKMLYKRKIGQDG-KVEKYKCRLVAQGFWQVEA-------------ASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEF--PGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAP-TLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYGGHG-CGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
EP+ ++A+ S+E D+W KA + EM + +N + V +PK++ V+G+K ++KRK G G + +YK RLVA+GF Q E +SIR LLA A +D EL D + AFL ++DE IY++ PE F E G V L K++YGL Q R W +F M IGF + D CV K+ + ++ + +++++DD+L K++ +++ L+ +F++KD+G A+ +G I R+R R L+ Q+ Y+ ++ RF++ + G LS P+ EEK + PY VG++M+T +RPD+A AV ++R+ PG H +AV +FQYL T+ G+ YGG+ ++ + D+D+ +DTR+S++G V+ + GA+SW + +Q V A T+EAEY+A++E V + ++L+ + E E +M G V V+ DN+ AI LA N+ R+KH DV+ H VRD A + V V ++D +D+LTK L
Sbjct: 734 EPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQPPEGFGEGIKDGQVCLLKKSLYGLKQSPRQWYKRFDKYMLDIGFNPSSHDGCVYFKLTE-DSMVYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTVFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITE--ELAMYRGKVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKVHTKDNPSDMLTKSL 1238 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1468.3271.1 >prot_F-serratus_M_contig1468.3271.1 ID=prot_F-serratus_M_contig1468.3271.1|Name=mRNA_F-serratus_M_contig1468.3271.1|organism=Fucus serratus male|type=polypeptide|length=336bp MQATLDVPEPRNRRQAMESHEWDEWRKAEETEMLGMVENCFYNQVARPKNback to top mRNA from alignment at F-serratus_M_contig1468:140171..141709- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1468.3271.1 ID=mRNA_F-serratus_M_contig1468.3271.1|Name=mRNA_F-serratus_M_contig1468.3271.1|organism=Fucus serratus male|type=mRNA|length=1539bp|location=Sequence derived from alignment at F-serratus_M_contig1468:140171..141709- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1468:140171..141709- >mRNA_F-serratus_M_contig1468.3271.1 ID=mRNA_F-serratus_M_contig1468.3271.1|Name=mRNA_F-serratus_M_contig1468.3271.1|organism=Fucus serratus male|type=CDS|length=2016bp|location=Sequence derived from alignment at F-serratus_M_contig1468:140171..141709- (Fucus serratus male)back to top |