mRNA_F-serratus_M_contig1468.3271.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1468.3271.1
Unique NamemRNA_F-serratus_M_contig1468.3271.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 4.190e-93
Identity = 166/415 (40.00%), Postives = 247/415 (59.52%), Query Frame = 1
Query:  259 VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYG-GHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
            V  +S+R L A A  ++  LRHFD +QAF+++D+DE++++ +PE      G + +LNK++YGL Q  R W++     +  +GF Q  AD CV R + +G   + +VVH+DDI + + ++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+   +IP   G   LS+ D+       EE   +P+RE +G+LMW AT TRPDIA AVR VAR+C +P   H +A + I  Y++ T + GIT+  G   GL ME + D+D+ +    RRSVSG + M   G ISW SR Q+     T+EAEYV+L++V+ +VLFLRQV  FM P   +  + VFEDN+ AI+LA N  ++  +KH DV+HH +R+    + + + +V S  QHAD LTK L
Sbjct:   16 VAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFS-IGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422          
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 5.120e-91
Identity = 166/415 (40.00%), Postives = 247/415 (59.52%), Query Frame = 1
Query:  259 VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYG-GHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
            V  +S+R L A A  ++  LRHFD +QAF+++D+DE++++ +PE      G + +LNK++YGL Q  R W++     +  +GF Q  AD CV R + +G   + +VVH+DDI + + ++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+   +IP   G   LS+ D+       EE   +P+RE +G+LMW AT TRPDIA AVR VAR+C +P   H +A + I  Y++ T + GIT+  G   GL ME + D+D+ +    RRSVSG + M   G ISW SR Q+     T+EAEYV+L++V+ +VLFLRQV  FM P   +  + VFEDN+ AI+LA N  ++  +KH DV+HH +R+    + + + +V S  QHAD LTK L
Sbjct:  190 VAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFS-IGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 596          
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 293 bits (751), Expect = 4.020e-89
Identity = 189/522 (36.21%), Postives = 294/522 (56.32%), Query Frame = 1
Query:    7 MQATLDVPEPRNRRQAMESHEWDEWRKAEETEMLGMVENCFYNQVARPKNKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQ-----VEAA--------SIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYGGHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
            M AT +VP  +   +A   H+ DEW+KA  +E+  ++ N  +  V +P ++  IG + ++  K  + G+V +YK RLVA+G+ Q      E A        S+R +LA    +  E+   D + AFL  +++EEIY+E+PE  +E             V  L +++YGL Q  R WN      +   GFE A ADPCV  +  +GE E +V +++DD+L   + +A +    A + +KF++KD+G A + +G  I  + + R L   Q  Y ES++K+F  +  K    P   G   L+KADEPQ  E+K + K  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A + + +YLL TK+ GI Y G   G   EAY+D+D+    D RRSVSG + ML    + W S  Q+  A  ++EAEY+ALS+ V + +++R++ + +    +VGA  ++EDN+ A+ LA N     RTKH D+++H +R+   +  V + YV +++Q A  +TK L
Sbjct:   59 MAATEEVP--KTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLAYFMTKGL 574          
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 9.070e-89
Identity = 161/409 (39.36%), Postives = 240/409 (58.68%), Query Frame = 1
Query:  277 RKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYG-GHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
            + L A A   + +L HFD EQAF++++++E++Y+ +P+      G + +L K++YGL Q  R W+      +  +GFEQ  AD CV R + DG   +++VVH+DDI A V ++   D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     +P +SG   LS  D  +   E      FP+RE VG+LMW AT TRPDIA AVR VAR+C +P   H  A M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVSG +     GA+SW SR Q+     T+EAEYVAL +VV ++LFLRQ+  FM P + +  + VFEDN+ AI+LA N  ++  +KH DV+HH +R+  + + + V +V S  Q AD LTK L
Sbjct:   46 KMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 446          
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE)

HSP 1 Score: 303 bits (775), Expect = 1.540e-87
Identity = 185/493 (37.53%), Postives = 289/493 (58.62%), Query Frame = 1
Query:   73 DEWRKAEETEMLGMVENCFYNQVARPKNKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQ-------------VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMV-VVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPT--LSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYGGHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQV-QEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
            D W++A + E    +EN  +  V  P  K+ + +K +++ K    GK+ K+K RLV +G  Q             V  +SIR LLA AA +D ++   DA  AFL+ D+ EEIY+  PE +QE  G V RL K++YGL Q  R WN K    +  IG  Q+K DPC+  K    + +MV V V +DD+L    D+       ++L + FK+ D+G+A++ +G  I+R+R+ +++  DQ  Y+++++ RF ++      AT   P   LSK  +P +P+E+++ +  PY+EAVG+L++ + + RPDIA AV  V+RF  NPGPAH  AV  I +Y+  T +W + Y G      +  Y DSDF + +D R+SV+G V+++ +G++SW ++ Q  TA  T+EAEY+ALS    + L+LR + +E + PS R+  + +F DN+ A+ LA N     RTKH DV+HH +R+    + ++  YV + D  AD LTK L
Sbjct:  853 DLWKQAMDVEYKSQLENGTWELVDLPPGKVPLNSKWVFRTKRDVTGKIVKHKARLVVKGCAQRKGLDFEETFSPVVRYSSIRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQE-SGKVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIYYK--SSQKKMVFVAVWVDDLLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGMEN-CNPAATPLDPNIKLSKDQQPSSPDERKKMEAIPYQEAVGSLLFASQVCRPDIAFAVSLVSRFNSNPGPAHWAAVKRILRYMKGTSDWKLEYDGTKSSE-ITGYCDSDFASDVDERKSVTGYVFLMCDGSVSWGTKKQPTTALSTTEAEYMALSAATQEALWLRGLSEELVPPSERI-PLRIFVDNQGALNLAQNGSYQSRTKHIDVRHHFLREKISEKLIKPTYVPTSDMVADSLTKSL 1339          
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 2.200e-86
Identity = 165/415 (39.76%), Postives = 247/415 (59.52%), Query Frame = 1
Query:  259 VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYG-GHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
            V  +S+R L A A  ++  LRHFD +QAF+++D+DE++++ +PE      G + +LNK++YGL Q  R W++     +  +GF Q  AD CV R + +G   + +VVH+DDI + + ++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+   +IP   G   LS+ D+       EE   +P+RE +G+LMW AT TRPDIA AVR VAR+C +P   H +A + I  Y++ T + GIT+  G   GL ME + D+D+ +    RRSVSG + M   G ISW SR Q+     T+EAEYV+L++V+ +VLFLRQV  FM P   +  + VFEDN+ AI+LA N  ++  +KH DV+HH +R+    + + + +V S  QHA+ LTK L
Sbjct:  711 VAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFS-IGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKAL 1117          
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 2.640e-86
Identity = 178/506 (35.18%), Postives = 282/506 (55.73%), Query Frame = 1
Query:   28 PEPRNRRQAMESHEWDEWRKAEETEMLGMVENCFYNQVAR-PKNKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQ-------------VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYGGHGC-GLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
            PEP + ++A+ S     W KA   E+ G++    +   A+ P+   VI  + ++K K  + GK+ K K RLVA+GF Q               AASIR ++A A   + EL H D EQAF ++ +D E+ +++P       G + RLNK++YGL Q  R +  +   D+  IGFEQ+ +DPCV+R ++  E   ++ +H+DDIL +   +   +     L      K++G+  +++GC  +R+R+   ++  Q  Y+ S+++RF++ + + IPA       S A++ ++  E EE    P+RE VG LMW A  TRP+ + AVRTVAR    P  +  KA   I  YL  T    + Y       +    Y D+DF +    RRSVSGA+ ++A   +SW S  Q+  +  TSEAEY+A+ + V + LF+  + + + PS +   ++VFEDNE AI LA N  +S R+KH DV+HH +R+ ++   + V +V S++QHAD+LTK L
Sbjct:  211 PEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 708          
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 9.150e-86
Identity = 175/488 (35.86%), Postives = 264/488 (54.10%), Query Frame = 1
Query:   79 WRKAEETEMLGMVENCFYNQV-ARPKNKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQV-------------EAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYGGHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
            W +A   E  G +    ++ V   P+ +  + +K  +  K  +DGK+EK+K RLVA+GF Q+              +ASI+ +LA A  K  +L H+D +QAF  A +DE++++ +P    E    V +  +AIYGL Q GR W     D +   GFEQ KADPCV RK+ D           D IL    D    +  A+ L + F  KD+G+  ++ GC + R+ +   L+  Q  Y++S+V RFDV+  + IPA+ G     K D+    E       +P REA+G++MW +T +RPDI+ AVR VAR    P   H KA++ I  YL  T++ GITY   G GL +  Y D+ + A  + RRSVSG    +    IS  S+ Q + +  ++EAEY+A  E V + LF+R V  F+ P     ++ V EDN+ A+ L  N  +S R+KH DV++H +R    +  + + +V + +QHAD+LTK L
Sbjct:   15 WEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLAS-LNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGE-------WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASY-ADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKAL 492          
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 1.040e-83
Identity = 151/415 (36.39%), Postives = 241/415 (58.07%), Query Frame = 1
Query:  259 VEAASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYG-GHGCGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
            V  +S+R L A A  ++ +L HFD +QAF+++++DE++++ +P+      G + +L K++YGL Q  R W++     + ++GF Q  AD CV R + +G   M++VVH+DDI A V  +   D+F  +L +   +K++G+  +Y  C   R+ +   L+  Q  + E +   + ++    +P       L+  DE       E     P+RE VG+LMW AT TRPDIA AVR VAR+C +P   H KA + I  Y+  T   GIT+  G   G+ M+ + D+D+ +    RRSVSG + M   G ++W SR Q+     T+EAEYVA+++V+ +VLFLRQV  FM P   +  + VFEDN+ AI++A N   +  +KH DV+HH +R+  + + + + +V +  QHAD LTK +
Sbjct:   16 VSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFA-VGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSV-KLTDFDE------NEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAI 422          
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Match: A0A438FEW0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEW0_VITVI)

HSP 1 Score: 291 bits (745), Expect = 1.110e-83
Identity = 183/508 (36.02%), Postives = 295/508 (58.07%), Query Frame = 1
Query:   31 EPRNRRQAMESHEWDEWRKAEETEMLGMVENCFYNQVARPKNKLVIGTKMLYKRKIGQDG-KVEKYKCRLVAQGFWQVEA-------------ASIRKLLATAATKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEF--PGAVGRLNKAIYGLAQEGRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHVKDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPATSGAP-TLSKADEPQNPEEKEETKMFPYREAVGALMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*IFQYLLHTKEWGITYGGHG-CGLCMEAYTDSDFGAWLDTRRSVSGAVWMLANGAISWHSRMQEVTAAGTSEAEYVALSEVVNDVLFLRQVQEFMEPSMRVGAVNVFEDNEVAIKLATNKHASRRTKHNDVKHHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1500
            EP+  ++A+ S+E D+W KA + EM  + +N  +  V +PK++ V+G+K ++KRK G  G +  +YK RLVA+GF Q E              +SIR LLA  A +D EL   D + AFL  ++DE IY++ PE F E    G V  L K++YGL Q  R W  +F   M  IGF  +  D CV  K+ + ++ + +++++DD+L   K++  +++    L+ +F++KD+G A+  +G  I R+R  R L+  Q+ Y+  ++ RF++     +    G    LS    P+  EEK   +  PY   VG++M+T   +RPD+A AV  ++R+   PG  H +AV  +FQYL  T+  G+ YGG+      ++ + D+D+   +DTR+S++G V+ +  GA+SW + +Q V A  T+EAEY+A++E V + ++L+ + E  E +M  G V V+ DN+ AI LA N+    R+KH DV+ H VRD   A  + V  V ++D  +D+LTK L
Sbjct:  734 EPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQPPEGFGEGIKDGQVCLLKKSLYGLKQSPRQWYKRFDKYMLDIGFNPSSHDGCVYFKLTE-DSMVYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTVFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITE--ELAMYRGKVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKVHTKDNPSDMLTKSL 1238          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1468.3271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE4.190e-9340.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE5.120e-9140.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q908_9STRA4.020e-8936.21Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JFG2_9PHAE9.070e-8939.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9Z683_LYGHE1.540e-8737.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5K2R1_9PHAE2.200e-8639.76Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JV80_9PHAE2.640e-8635.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE9.150e-8635.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE1.040e-8336.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438FEW0_VITVI1.110e-8336.02Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1468contigF-serratus_M_contig1468:140171..141709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score188.0
Seed ortholog evalue7.4e-45
Seed eggNOG ortholog5111.M1VW57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Exons2
Model size1500
Cds size1008
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1468.3271.1prot_F-serratus_M_contig1468.3271.1Fucus serratus malepolypeptideF-serratus_M_contig1468 140657..141703 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929448.0133526-UTR-F-serratus_M_contig1468:140170..1406561622929448.0133526-UTR-F-serratus_M_contig1468:140170..140656Fucus serratus maleUTRF-serratus_M_contig1468 140171..140656 -
1690962857.345045-UTR-F-serratus_M_contig1468:140170..1406561690962857.345045-UTR-F-serratus_M_contig1468:140170..140656Fucus serratus maleUTRF-serratus_M_contig1468 140171..140656 -
1622929448.0666811-UTR-F-serratus_M_contig1468:141703..1417091622929448.0666811-UTR-F-serratus_M_contig1468:141703..141709Fucus serratus maleUTRF-serratus_M_contig1468 141704..141709 -
1690962857.373318-UTR-F-serratus_M_contig1468:141703..1417091690962857.373318-UTR-F-serratus_M_contig1468:141703..141709Fucus serratus maleUTRF-serratus_M_contig1468 141704..141709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929448.0279734-CDS-F-serratus_M_contig1468:140656..1414051622929448.0279734-CDS-F-serratus_M_contig1468:140656..141405Fucus serratus maleCDSF-serratus_M_contig1468 140657..141405 -
1690962857.356365-CDS-F-serratus_M_contig1468:140656..1414051690962857.356365-CDS-F-serratus_M_contig1468:140656..141405Fucus serratus maleCDSF-serratus_M_contig1468 140657..141405 -
1622929448.0482945-CDS-F-serratus_M_contig1468:141444..1417031622929448.0482945-CDS-F-serratus_M_contig1468:141444..141703Fucus serratus maleCDSF-serratus_M_contig1468 141445..141703 -
1690962857.3653853-CDS-F-serratus_M_contig1468:141444..1417031690962857.3653853-CDS-F-serratus_M_contig1468:141444..141703Fucus serratus maleCDSF-serratus_M_contig1468 141445..141703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1468.3271.1

>prot_F-serratus_M_contig1468.3271.1 ID=prot_F-serratus_M_contig1468.3271.1|Name=mRNA_F-serratus_M_contig1468.3271.1|organism=Fucus serratus male|type=polypeptide|length=336bp
MQATLDVPEPRNRRQAMESHEWDEWRKAEETEMLGMVENCFYNQVARPKN
KLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEAASIRKLLATAATK
DGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLAQE
GRCWNNKFCDDMTVIGFEQAKADPCVVRKVVDGEAEMVVVVHIDDILAHV
KDQATMDRFAAELQQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYV
ESMVKRFDVKKEAKIPATSGAPTLSKADEPQNPEEKEETKMFPYREAVGA
LMWTATMTRPDIACAVRTVARFCENPGPAHKKAVM*
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mRNA from alignment at F-serratus_M_contig1468:140171..141709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1468.3271.1 ID=mRNA_F-serratus_M_contig1468.3271.1|Name=mRNA_F-serratus_M_contig1468.3271.1|organism=Fucus serratus male|type=mRNA|length=1539bp|location=Sequence derived from alignment at F-serratus_M_contig1468:140171..141709- (Fucus serratus male)
ACGGCTATGCAAGCGACGTTAGATGTACCAGAACCGAGAAATCGGCGACA GGCGATGGAATCGCATGAATGGGACGAATGGCGGAAGGCAGAAGAGACTG AAATGCTTGGAATGGTCGAGAACTGCTTTTATAATCAGGTGGCTCGGCCG AAGAATAAGCTAGTGATCGGCACGAAAATGTTGTACAAGCGAAAAATCGG GCAGGACGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCTCAAGGGT TCTGGCAGGTGGAAGGTGTGCACTACACGGAAAAGTACCCGCCCACGCCA TCAGCCGCGTCAATCCGGAAGCTTTTGGCGACGGCAGCAACCAAGGATGG GGAGCTGCGCCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATATTG ACGAGGAGATATACATAGAGATCCCCGAGGAGTTTCAGGAGTTTCCAGGG GCAGTGGGACGGCTTAATAAGGCCATTTACGGACTCGCGCAGGAGGGGAG GTGCTGGAATAATAAGTTCTGTGACGACATGACGGTGATTGGATTCGAGC AGGCAAAGGCGGACCCGTGCGTGGTCCGGAAGGTCGTTGACGGTGAGGCG GAGATGGTGGTGGTCGTGCACATAGACGACATCCTTGCCCATGTAAAAGA CCAAGCGACGATGGATAGATTCGCGGCTGAGCTCCAGCAGAAGTTTAAGT TGAAGGACATGGGGGACGCTGAATACTACATGGGTTGTCACATCACCAGG AACCGCAAGACGCGTGAGTTGAAGTTCGACCAACACCTGTACGTGGAGTC AATGGTAAAGAGATTCGATGTCAAGAAGGAAGCCAAGATACCGGCTACGT CGGGGGCGCCGACGCTCTCAAAGGCGGATGAGCCGCAAAACCCAGAGGAG AAGGAAGAAACGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCAT GTGGACGGCGACGATGACACGGCCGGATATTGCGTGCGCCGTGCGCACGG TGGCCAGGTTCTGCGAAAACCCTGGGCCGGCACACAAGAAGGCAGTGATG TAGATCTTCCAGTATCTCCTTCACACAAAAGAATGGGGGATTACGTACGG TGGACATGGCTGTGGACTCTGCATGGAAGCATATACGGATTCGGATTTCG GAGCCTGGCTGGACACAAGACGGTCGGTTTCAGGTGCGGTGTGGATGTTG GCCAATGGAGCGATCAGTTGGCACTCGAGGATGCAAGAAGTAACAGCAGC AGGTACCTCGGAGGCAGAGTACGTTGCCTTATCAGAGGTAGTAAACGATG TACTGTTTTTGAGACAGGTGCAGGAGTTCATGGAACCGTCGATGAGGGTC GGTGCGGTAAATGTATTTGAAGATAATGAGGTGGCCATCAAGCTGGCCAC AAACAAGCATGCTAGCCGTAGGACTAAGCACAATGATGTGAAGCATCATC TAGTAAGGGACGCGTCTGACGCGCAAAGGGTAAGAGTAGCGTACGTAAGG TCGGAAGATCAACACGCGGATTTACTCACGAAACCGCTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1468:140171..141709-

>mRNA_F-serratus_M_contig1468.3271.1 ID=mRNA_F-serratus_M_contig1468.3271.1|Name=mRNA_F-serratus_M_contig1468.3271.1|organism=Fucus serratus male|type=CDS|length=2016bp|location=Sequence derived from alignment at F-serratus_M_contig1468:140171..141709- (Fucus serratus male)
ATGCAAGCGACGTTAGATGTACCAGAACCGAGAAATCGGCGACAGGCGAT
GGAATCGCATGAATGGGACGAATGGCGGAAGGCAGAAGAGACTGAAATGC
TTGGAATGGTCGAGAACTGCTTTTATAATCAGGTGGCTCGGCCGAAGAAT
AAGCTAGTGATCGGCACGAAAATGTTGTACAAGCGAAAAATCGGGCAGGA
CGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCTCAAGGGTTCTGGC
AGGTGGAAGATGCAAGCGACGTTAGATGTACCAGAACCGAGAAATCGGCG
ACAGGCGATGGAATCGCATGAATGGGACGAATGGCGGAAGGCAGAAGAGA
CTGAAATGCTTGGAATGGTCGAGAACTGCTTTTATAATCAGGTGGCTCGG
CCGAAGAATAAGCTAGTGATCGGCACGAAAATGTTGTACAAGCGAAAAAT
CGGGCAGGACGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCTCAAG
GGTTCTGGCAGGTGGAAGCCGCGTCAATCCGGAAGCTTTTGGCGACGGCA
GCAACCAAGGATGGGGAGCTGCGCCATTTCGACGCAGAGCAGGCGTTTTT
GAAGGCGGATATTGACGAGGAGATATACATAGAGATCCCCGAGGAGTTTC
AGGAGTTTCCAGGGGCAGTGGGACGGCTTAATAAGGCCATTTACGGACTC
GCGCAGGAGGGGAGGTGCTGGAATAATAAGTTCTGTGACGACATGACGGT
GATTGGATTCGAGCAGGCAAAGGCGGACCCGTGCGTGGTCCGGAAGGTCG
TTGACGGTGAGGCGGAGATGGTGGTGGTCGTGCACATAGACGACATCCTT
GCCCATGTAAAAGACCAAGCGACGATGGATAGATTCGCGGCTGAGCTCCA
GCAGAAGTTTAAGTTGAAGGACATGGGGGACGCTGAATACTACATGGGTT
GTCACATCACCAGGAACCGCAAGACGCGTGAGTTGAAGTTCGACCAACAC
CTGTACGTGGAGTCAATGGTAAAGAGATTCGATGTCAAGAAGGAAGCCAA
GATACCGGCTACGTCGGGGGCGCCGACGCTCTCAAAGGCGGATGAGCCGC
AAAACCCAGAGGAGAAGGAAGAAACGAAGATGTTCCCGTACCGAGAGGCA
GTGGGGGCGCTCATGTGGACGGCGACGATGACACGGCCGGATATTGCGTG
CGCCGTGCGCACGGTGGCCAGGTTCTGCGAAAACCCTGGGCCGGCACACA
AGAAGGCAGTGATGTAGCCGCGTCAATCCGGAAGCTTTTGGCGACGGCAG
CAACCAAGGATGGGGAGCTGCGCCATTTCGACGCAGAGCAGGCGTTTTTG
AAGGCGGATATTGACGAGGAGATATACATAGAGATCCCCGAGGAGTTTCA
GGAGTTTCCAGGGGCAGTGGGACGGCTTAATAAGGCCATTTACGGACTCG
CGCAGGAGGGGAGGTGCTGGAATAATAAGTTCTGTGACGACATGACGGTG
ATTGGATTCGAGCAGGCAAAGGCGGACCCGTGCGTGGTCCGGAAGGTCGT
TGACGGTGAGGCGGAGATGGTGGTGGTCGTGCACATAGACGACATCCTTG
CCCATGTAAAAGACCAAGCGACGATGGATAGATTCGCGGCTGAGCTCCAG
CAGAAGTTTAAGTTGAAGGACATGGGGGACGCTGAATACTACATGGGTTG
TCACATCACCAGGAACCGCAAGACGCGTGAGTTGAAGTTCGACCAACACC
TGTACGTGGAGTCAATGGTAAAGAGATTCGATGTCAAGAAGGAAGCCAAG
ATACCGGCTACGTCGGGGGCGCCGACGCTCTCAAAGGCGGATGAGCCGCA
AAACCCAGAGGAGAAGGAAGAAACGAAGATGTTCCCGTACCGAGAGGCAG
TGGGGGCGCTCATGTGGACGGCGACGATGACACGGCCGGATATTGCGTGC
GCCGTGCGCACGGTGGCCAGGTTCTGCGAAAACCCTGGGCCGGCACACAA
GAAGGCAGTGATGTAG
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