mRNA_F-serratus_M_contig1461.3252.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1461.3252.1
Unique NamemRNA_F-serratus_M_contig1461.3252.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.410e-25
Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = 3
Query:  111 LQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHKLHDEEFPKVVLKKQRDSLVNHGVLKWDFALYLWKDVLTPAEQSLQGKVVESLFLVLLKLGVIL 470
            L+ +   A +SN ESAL GALWIS+FAG  LR+DG +GIFLDV+WLSK LSPILSHKL ++ F    L   RD L   G+L+ +FAL++W++ +       + +V E+LF VL+KLGV L
Sbjct:  338 LRDDVPAAMISNWESALEGALWISDFAGHTLRVDGGDGIFLDVLWLSKCLSPILSHKLKNQPFENRWLW-MRDDLAGDGILRREFALHIWRESVGEVVMESE-EVAEALFSVLIKLGVAL 455          
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.920e-24
Identity = 60/141 (42.55%), Postives = 91/141 (64.54%), Query Frame = 3
Query:   48 FTTKKQLLELLQGISHQVSVGLQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHKLHDEEFPKVVLKKQRDSLVNHGVLKWDFALYLWKDVLTPAEQSLQGKVVESLFLVLLKLGVIL 470
            F T+  L+E  +G+   V   L+ + +   VS+ + A+ GALWISEFAGQ+LR+   +G+FLDVVWLS  L PIL HKL  + FP+      R+ LV++G+L+  FA +LW DV+   E ++  +V+++L  V++ LGV L
Sbjct:  468 FFTENSLVEQWKGVVQNVEGELRSDAEKMAVSDPDGAIEGALWISEFAGQVLRVANGDGVFLDVVWLSTALKPILDHKLVHKVFPQH-FAGMRNELVHNGILRIAFAEHLWSDVM---EITVPEEVLDALCRVIVNLGVAL 604          
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 7.440e-21
Identity = 63/143 (44.06%), Postives = 83/143 (58.04%), Query Frame = 3
Query:   42 NTFTTKKQLLELLQGISHQVSVGLQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHKLHDEEFPKVVLKKQRDSLVNHGVLKWDFALYLWKDVLTPAEQSLQGKVVESLFLVLLKLGVIL 470
            ++F T+  L +        V+  L    +   VS+   A+ GALWISEFAG ILR+   + IFLDVVWLS  L PILSHKL    FP+  L   +D LV++GVL+  FA YLW D+   A  S   +V+++L  VL  LGV L
Sbjct:  623 SSFMTESTLFQRWNDTVKSVAGELTSPAERMAVSDHHGAMEGALWISEFAGHILRVAHSDVIFLDVVWLSAALKPILSHKLESHFFPRSELTAMKDELVDNGVLRLKFAEYLW-DLEMEAPPS--EEVMDALCGVLHSLGVAL 762          
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.880e-7
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  138 VSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK----------LHDEEFPKVVLKKQRD-----SLVNHGVLKWDFALYLWKDVLT 395
            V+N E+AL GAL I EF G ++R   E+ +FLDVVWL+++L P+L+HK          L D    ++ L    D      L N GVL+   A  +W D L+
Sbjct:  430 VTNAENALEGALSIREFDGSLVR--HEKFVFLDVVWLARILKPLLNHKDQRTFDGRVNLGDTGDARITLDDSSDIASWGRLKNEGVLEPRLAYAMWPDGLS 528          
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.910e-7
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   96 QVSVGLQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK----------LHDEEFPKVVLKKQRD-----SLVNHGVLKWDFALYLWKDVLT 395
            + +VGL   +   TV+N ++AL GAL I EF G ++R   E  +FLDVVWL+++L P+L+HK          L D    +V L+   D      L N GVL+   A  LW + L+
Sbjct:  632 EAAVGLAGRD--ITVTNADNALEGALAIREFDGSLVR--HETFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPSDIASWGRLKNEGVLEPRLARKLWPNGLS 742          
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.540e-7
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = 3
Query:  108 GLQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK----------LHDEEFPKVVLKKQRD-----SLVNHGVLKWDFALYLWKDVLT 395
            GL+R     TV+N ++AL GAL I EF G ++R   E+ IFLDVVWL+K+L P+L+HK          L D    ++ L    D      L + GVL+   A  +W + L+
Sbjct:  492 GLERSG--VTVTNAKNALEGALLIREFDGSLIRY--EKFIFLDVVWLAKILKPLLNHKDQETFDGLVSLGDTGDARITLDDPSDIASWGRLKSQGVLEPRLAYAIWPNGLS 598          
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 4.540e-7
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  111 LQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK 281
            L+ E+   TV+N E AL GAL I EF G ++R   E  +FLDVVWLS++L P+L+HK
Sbjct:   65 LELEKREITVANAEHALEGALSIREFDGSLIR--HETFVFLDVVWLSRILKPLLNHK 119          
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 8.880e-7
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  135 TVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK----------LHDEEFPKVVLKKQRD-----SLVNHGVLKWDFALYLWKDVLT 395
            TV++ ++AL GAL I EF G ++R   E  +FLDVVWL+++L P+L+HK          L D    +V L+   D      L N GV++   A  LW D L+
Sbjct:  571 TVTSAKNALEGALSIREFDGSLVR--HETFVFLDVVWLARILKPLLNHKDEESFDGLVNLGDTGDTRVTLEDPLDIVSWFRLKNEGVIEPRLACALWPDGLS 670          
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.150e-6
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 3
Query:  135 TVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK----------LHDEEFPKVVLKKQRD-----SLVNHGVLKWDFALYLWKDVLT 395
            TV+N E+AL GAL I EF G +  +  E+ +FLDVVWL+++L P+L+HK          L D    ++ L    D      L N GVL+   A  +W D L+
Sbjct:  478 TVTNAENALEGALSIREFDGSL--VCHEKFVFLDVVWLARILKPLLNHKDQEMFDGRVNLGDTGDTRITLDDPSDIASWDRLKNEGVLEPRLADAIWPDGLS 577          
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5JFQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ1_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.170e-6
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   54 TKKQLLELLQGISHQVSVG------LQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHKLHDEEFPKVVLKKQRDSLVNHGVLKWDFALYLW 380
            T +  L++ QGI+ +   G      L+ E+    V+N E+AL GA  I EF G ++R +    +FLDVVWL+K+L P+L+HK  +E F         D L   G+L+   A  +W
Sbjct:  325 TAEPKLDVYQGITVEELRGKWQETVLELEKIDEAVNNTENALEGARSIREFDGSLVRHN--TFVFLDVVWLAKILKPLLNHK-EEETF---------DGLKREGILEPRLAQVVW 427          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE1.410e-2551.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW02_9PHAE5.920e-2442.55Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FVX5_ECTSI7.440e-2144.06LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FZA1_ECTSI1.880e-738.61LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FUD0_ECTSI1.910e-737.39LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSZ8_9PHAE2.540e-737.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD1_9PHAE4.540e-752.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC3_ECTSI8.880e-738.24LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L650_9PHAE1.150e-638.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFQ1_9PHAE1.170e-635.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1461contigF-serratus_M_contig1461:210437..211339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size470
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1461.3252.1prot_F-serratus_M_contig1461.3252.1Fucus serratus malepolypeptideF-serratus_M_contig1461 210437..211337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929445.460174-CDS-F-serratus_M_contig1461:210436..2107251622929445.460174-CDS-F-serratus_M_contig1461:210436..210725Fucus serratus maleCDSF-serratus_M_contig1461 210437..210725 -
1690962855.982333-CDS-F-serratus_M_contig1461:210436..2107251690962855.982333-CDS-F-serratus_M_contig1461:210436..210725Fucus serratus maleCDSF-serratus_M_contig1461 210437..210725 -
1622929445.48675-CDS-F-serratus_M_contig1461:211158..2113371622929445.48675-CDS-F-serratus_M_contig1461:211158..211337Fucus serratus maleCDSF-serratus_M_contig1461 211159..211337 -
1690962855.996869-CDS-F-serratus_M_contig1461:211158..2113371690962855.996869-CDS-F-serratus_M_contig1461:211158..211337Fucus serratus maleCDSF-serratus_M_contig1461 211159..211337 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929445.5099013-UTR-F-serratus_M_contig1461:211337..2113391622929445.5099013-UTR-F-serratus_M_contig1461:211337..211339Fucus serratus maleUTRF-serratus_M_contig1461 211338..211339 -
1690962856.0068645-UTR-F-serratus_M_contig1461:211337..2113391690962856.0068645-UTR-F-serratus_M_contig1461:211337..211339Fucus serratus maleUTRF-serratus_M_contig1461 211338..211339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1461.3252.1

>prot_F-serratus_M_contig1461.3252.1 ID=prot_F-serratus_M_contig1461.3252.1|Name=mRNA_F-serratus_M_contig1461.3252.1|organism=Fucus serratus male|type=polypeptide|length=156bp
MRATFDETIEIVTNTFTTKKQLLELLQGISHQVSVGLQREEDMATVSNVE
SALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHKLHDEEFP
KVVLKKQRDSLVNHGVLKWDFALYLWKDVLTPAEQSLQGKVVESLFLVLL
KLGVIL
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mRNA from alignment at F-serratus_M_contig1461:210437..211339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1461.3252.1 ID=mRNA_F-serratus_M_contig1461.3252.1|Name=mRNA_F-serratus_M_contig1461.3252.1|organism=Fucus serratus male|type=mRNA|length=903bp|location=Sequence derived from alignment at F-serratus_M_contig1461:210437..211339- (Fucus serratus male)
AGATGAGGGCAACATTCGATGAAACGATCGAAATAGTTACAAACACGTTC ACAACAAAAAAACAGCTGTTGGAGTTGTTGCAGGGCATCAGCCATCAAGT TTCTGTGGGGTTACAACGTGAGGAGGATATGGCGACGGTCTCCAACGTGG AAAGTGCTCTCAGTGGTGCACTCTGGATCAGGTAGGGACACCATACCCAC TCTTCTTCTAGCCGAAAACGTTTGGTTGAATGGTGTTGACTAAAAAAGCT GCAAATGACAGCGGAACGTCCAGGAGACTATTCGCGCATTGAGTTATAAT TCTTAGGGCTAGGCTTACGGTAGGTCTTCCAGAACGTCCCGTCTAAATAA AAATCCGGTGCTCACCGATAGCATGTTGCCGTCTTTCGGCACGTTTGCTG GGATCTTCCGCTTCGTCAAAACCACTGCTGCCTGGCACGTCATACCGGCG CTGGTAACTATTTCGGTACTTCGTGTCATTTTTTTGTTTGAGTTAGGATT ATCTACTCCTCTATACTTCTCTCTGGTTACGGCAAGTGCGATTCACGAAA TGTTGTTATGCCGATGCAGATTCTCTACCTCCCCTTGCGCCGGCTGATTT TTTCGTGTGTTCAGTGAGTTTGCAGGACAGATTTTGCGCATTGATGGCGA AGAAGGCATATTTCTTGACGTGGTGTGGCTTTCCAAGGTTTTAAGCCCCA TCTTGAGCCACAAGCTTCACGATGAAGAGTTTCCAAAGGTCGTCTTGAAA AAGCAGAGGGACAGCCTTGTCAATCACGGTGTTCTCAAGTGGGATTTTGC CCTATACCTTTGGAAAGATGTCCTGACCCCTGCCGAACAGAGTCTACAGG GCAAGGTGGTCGAATCTCTCTTCCTCGTTCTCCTGAAACTTGGCGTGATC CTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1461:210437..211339-

>mRNA_F-serratus_M_contig1461.3252.1 ID=mRNA_F-serratus_M_contig1461.3252.1|Name=mRNA_F-serratus_M_contig1461.3252.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig1461:210437..211339- (Fucus serratus male)
ATGAGGGCAACATTCGATGAAACGATCGAAATAGTTACAAACACGTTCAC
AACAAAAAAACAGCTGTTGGAGTTGTTGCAGGGCATCAGCCATCAAGTTT
CTGTGGGGTTACAACGTGAGGAGGATATGGCGACGGTCTCCAACGTGGAA
AGTGCTCTCAGTGGTGCACTCTGGATCAGATGAGGGCAACATTCGATGAA
ACGATCGAAATAGTTACAAACACGTTCACAACAAAAAAACAGCTGTTGGA
GTTGTTGCAGGGCATCAGCCATCAAGTTTCTGTGGGGTTACAACGTGAGG
AGGATATGGCGACGGTCTCCAACGTGGAAAGTGCTCTCAGTGGTGCACTC
TGGATCAGTGAGTTTGCAGGACAGATTTTGCGCATTGATGGCGAAGAAGG
CATATTTCTTGACGTGGTGTGGCTTTCCAAGGTTTTAAGCCCCATCTTGA
GCCACAAGCTTCACGATGAAGAGTTTCCAAAGGTCGTCTTGAAAAAGCAG
AGGGACAGCCTTGTCAATCACGGTGTTCTCAAGTGGGATTTTGCCCTATA
CCTTTGGAAAGATGTCCTGACCCCTGCCGAACAGAGTCTACAGGGCAAGG
TGGTCGAATCTCTCTTCCTCGTTCTCCTGAAACTTGGCGTGATCCTTTGA
GTTTGCAGGACAGATTTTGCGCATTGATGGCGAAGAAGGCATATTTCTTG
ACGTGGTGTGGCTTTCCAAGGTTTTAAGCCCCATCTTGAGCCACAAGCTT
CACGATGAAGAGTTTCCAAAGGTCGTCTTGAAAAAGCAGAGGGACAGCCT
TGTCAATCACGGTGTTCTCAAGTGGGATTTTGCCCTATACCTTTGGAAAG
ATGTCCTGACCCCTGCCGAACAGAGTCTACAGGGCAAGGTGGTCGAATCT
CTCTTCCTCGTTCTCCTGAAACTTGGCGTGATCCTT
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