mRNA_F-serratus_M_contig1461.3252.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.410e-25 Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = 3
Query: 111 LQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHKLHDEEFPKVVLKKQRDSLVNHGVLKWDFALYLWKDVLTPAEQSLQGKVVESLFLVLLKLGVIL 470
L+ + A +SN ESAL GALWIS+FAG LR+DG +GIFLDV+WLSK LSPILSHKL ++ F L RD L G+L+ +FAL++W++ + + +V E+LF VL+KLGV L
Sbjct: 338 LRDDVPAAMISNWESALEGALWISDFAGHTLRVDGGDGIFLDVLWLSKCLSPILSHKLKNQPFENRWLW-MRDDLAGDGILRREFALHIWRESVGEVVMESE-EVAEALFSVLIKLGVAL 455
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE) HSP 1 Score: 107 bits (266), Expect = 5.920e-24 Identity = 60/141 (42.55%), Postives = 91/141 (64.54%), Query Frame = 3
Query: 48 FTTKKQLLELLQGISHQVSVGLQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHKLHDEEFPKVVLKKQRDSLVNHGVLKWDFALYLWKDVLTPAEQSLQGKVVESLFLVLLKLGVIL 470
F T+ L+E +G+ V L+ + + VS+ + A+ GALWISEFAGQ+LR+ +G+FLDVVWLS L PIL HKL + FP+ R+ LV++G+L+ FA +LW DV+ E ++ +V+++L V++ LGV L
Sbjct: 468 FFTENSLVEQWKGVVQNVEGELRSDAEKMAVSDPDGAIEGALWISEFAGQVLRVANGDGVFLDVVWLSTALKPILDHKLVHKVFPQH-FAGMRNELVHNGILRIAFAEHLWSDVM---EITVPEEVLDALCRVIVNLGVAL 604
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 7.440e-21 Identity = 63/143 (44.06%), Postives = 83/143 (58.04%), Query Frame = 3
Query: 42 NTFTTKKQLLELLQGISHQVSVGLQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHKLHDEEFPKVVLKKQRDSLVNHGVLKWDFALYLWKDVLTPAEQSLQGKVVESLFLVLLKLGVIL 470
++F T+ L + V+ L + VS+ A+ GALWISEFAG ILR+ + IFLDVVWLS L PILSHKL FP+ L +D LV++GVL+ FA YLW D+ A S +V+++L VL LGV L
Sbjct: 623 SSFMTESTLFQRWNDTVKSVAGELTSPAERMAVSDHHGAMEGALWISEFAGHILRVAHSDVIFLDVVWLSAALKPILSHKLESHFFPRSELTAMKDELVDNGVLRLKFAEYLW-DLEMEAPPS--EEVMDALCGVLHSLGVAL 762
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 1.880e-7 Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 3
Query: 138 VSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK----------LHDEEFPKVVLKKQRD-----SLVNHGVLKWDFALYLWKDVLT 395
V+N E+AL GAL I EF G ++R E+ +FLDVVWL+++L P+L+HK L D ++ L D L N GVL+ A +W D L+
Sbjct: 430 VTNAENALEGALSIREFDGSLVR--HEKFVFLDVVWLARILKPLLNHKDQRTFDGRVNLGDTGDARITLDDSSDIASWGRLKNEGVLEPRLAYAMWPDGLS 528
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 1.910e-7 Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 3
Query: 96 QVSVGLQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK----------LHDEEFPKVVLKKQRD-----SLVNHGVLKWDFALYLWKDVLT 395
+ +VGL + TV+N ++AL GAL I EF G ++R E +FLDVVWL+++L P+L+HK L D +V L+ D L N GVL+ A LW + L+
Sbjct: 632 EAAVGLAGRD--ITVTNADNALEGALAIREFDGSLVR--HETFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPSDIASWGRLKNEGVLEPRLARKLWPNGLS 742
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 2.540e-7 Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = 3
Query: 108 GLQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK----------LHDEEFPKVVLKKQRD-----SLVNHGVLKWDFALYLWKDVLT 395
GL+R TV+N ++AL GAL I EF G ++R E+ IFLDVVWL+K+L P+L+HK L D ++ L D L + GVL+ A +W + L+
Sbjct: 492 GLERSG--VTVTNAKNALEGALLIREFDGSLIRY--EKFIFLDVVWLAKILKPLLNHKDQETFDGLVSLGDTGDARITLDDPSDIASWGRLKSQGVLEPRLAYAIWPNGLS 598
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 4.540e-7 Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 3
Query: 111 LQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK 281
L+ E+ TV+N E AL GAL I EF G ++R E +FLDVVWLS++L P+L+HK
Sbjct: 65 LELEKREITVANAEHALEGALSIREFDGSLIR--HETFVFLDVVWLSRILKPLLNHK 119
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 8.880e-7 Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 3
Query: 135 TVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK----------LHDEEFPKVVLKKQRD-----SLVNHGVLKWDFALYLWKDVLT 395
TV++ ++AL GAL I EF G ++R E +FLDVVWL+++L P+L+HK L D +V L+ D L N GV++ A LW D L+
Sbjct: 571 TVTSAKNALEGALSIREFDGSLVR--HETFVFLDVVWLARILKPLLNHKDEESFDGLVNLGDTGDTRVTLEDPLDIVSWFRLKNEGVIEPRLACALWPDGLS 670
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 1.150e-6 Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 3
Query: 135 TVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHK----------LHDEEFPKVVLKKQRD-----SLVNHGVLKWDFALYLWKDVLT 395
TV+N E+AL GAL I EF G + + E+ +FLDVVWL+++L P+L+HK L D ++ L D L N GVL+ A +W D L+
Sbjct: 478 TVTNAENALEGALSIREFDGSL--VCHEKFVFLDVVWLARILKPLLNHKDQEMFDGRVNLGDTGDTRITLDDPSDIASWDRLKNEGVLEPRLADAIWPDGLS 577
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Match: A0A6H5JFQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ1_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 1.170e-6 Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 3
Query: 54 TKKQLLELLQGISHQVSVG------LQREEDMATVSNVESALSGALWISEFAGQILRIDGEEGIFLDVVWLSKVLSPILSHKLHDEEFPKVVLKKQRDSLVNHGVLKWDFALYLW 380
T + L++ QGI+ + G L+ E+ V+N E+AL GA I EF G ++R + +FLDVVWL+K+L P+L+HK +E F D L G+L+ A +W
Sbjct: 325 TAEPKLDVYQGITVEELRGKWQETVLELEKIDEAVNNTENALEGARSIREFDGSLVRHN--TFVFLDVVWLAKILKPLLNHK-EEETF---------DGLKREGILEPRLAQVVW 427 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1461.3252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1461.3252.1 >prot_F-serratus_M_contig1461.3252.1 ID=prot_F-serratus_M_contig1461.3252.1|Name=mRNA_F-serratus_M_contig1461.3252.1|organism=Fucus serratus male|type=polypeptide|length=156bp MRATFDETIEIVTNTFTTKKQLLELLQGISHQVSVGLQREEDMATVSNVEback to top mRNA from alignment at F-serratus_M_contig1461:210437..211339- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1461.3252.1 ID=mRNA_F-serratus_M_contig1461.3252.1|Name=mRNA_F-serratus_M_contig1461.3252.1|organism=Fucus serratus male|type=mRNA|length=903bp|location=Sequence derived from alignment at F-serratus_M_contig1461:210437..211339- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1461:210437..211339- >mRNA_F-serratus_M_contig1461.3252.1 ID=mRNA_F-serratus_M_contig1461.3252.1|Name=mRNA_F-serratus_M_contig1461.3252.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig1461:210437..211339- (Fucus serratus male)back to top |